WHO The"Bad Bug Book" Food Safety @ NC State University Center for Food Safety & Applied Nutrition Laboratory Animal Resources Agent and Material Safety Information Manual News Briefs and Epidemiological Bulletins @ University of Alberta, CA The Greek System for Surveillance of Antimicrobial Resistance Pathogen Detection Research at Pacific Northwest National Laboratory Infectious Diseases Weblink Emerging Infectious Diseases @National Center for Infectious Diseases Malaria Database Baron's Medical Microbiology textbook 4th edition Bug Bytes Tuberculosis tuberculosis (Mycobacterium tuberculosis) Vaccine Approaches to Tuberculosis Global Tuberculosis Programme Legionnaire's Disease legionaire's disease (Legionella pneumophila) legionaire's disease Legionellosis Periodontal disease Detection of Periodontal disease (Porphyromonas gingivalis) Periodontal disease & Blood-Clotting

CliniWeb International EPIDEMIC @the American Museum of Natural History Cholera and Epidemic Dysentery (Vibrio cholerae) Cerebrospinal Meningitis (Meningococcal meningitis) Leprosy (Mycobacterium leprae) Typhoid fever (Salmonella typhimurium) Diptheria (Corynebacterium diptheriae) Pneumonia (Streptococcus pneumonia) Ulcers (Helicobacter pylori) Pumpkin wilt (Erwinia tracheiphila) Rickettsial Diseases (Rickettsia prowazekii) Prostatitis Diseases General List Malaria (Plasmodium sp.) Trypanosomiasis (Trypanosoma sp.) Schistosomiasis (Schistosoma sp.) TSETransmissible Spongiform Encephalopathies HIV ASD HIV AIDS Knowledge Base Haemorrhagic Fevers Dengue, Ebola Influenza Zoonotic Diseases Polio Eradication HPV Human papillomavirus

ABTI ACD Advanced Chemistry Development, Inc. Affymetrix Agouron Pharmaceuticals, Inc @La Jolla, CA Allergan, INC. @Irvine, CA Alliance Pharmaceutical Corp. AlphaGene, Inc. ALZA Corporation @Palo Alto, CA Amersham Amgen @Thousand Oaks, CA, Amylin Pharmaceuticals, Inc. @San Diego, California ApoCom, Inc. Ares-Serono ARIAD Pharmaceuticals, Inc. Atheris Laboratories SA Astra Arcus USA, Inc. @Worcester, MA Aurora Biosciences Corporation @San Diego, CA ATCG Biological Reagents Atheris @Geneva, Switzerland AxCell Biosciences Co. @Newtown, Pa AXYS (Sequana + Axis) @San Francisco, California Base4 Bioinformatics Home Page Baxter International, Inc. @Deerfield, IL Bayer @Leverkusen, Germany Beckman Coulter, Inc. Bio Balance Incorporated @New York BioDiscovery, Inc. Biogen @Cambridge, Massachusets Bioinformatics Solutions Ltd. BioMeda Corp. Biomedical Computing, Inc. Bionique Testing Laboratories, Inc @Saranac Lake, NY Bio-Rad BIOSIS BIOSOFT bioStrategies @Chicago, IL BioSupplyNet @Plainview, NY Biosystematica @Devon, UK BioTools, Inc. BTC BioSpecifics Technology Co. Biotransplant, Inc. @Charlestown, MA BioVisioN GmbH Boehringer Mannheim Biochemicals & Roche Brinkmann @Mississauga, ONT BTX Genetronics, Inc @San Diego, CA Cadus Pharmaceutical Corp. @Tarrytown, NY Caesar Software LLC Calbiochem-Novabiochem Corporation Calgene, Inc. @Davis, California CallistoGen AG Caltech Genome Research Laboratory @Pasadena, CA C.B.S. Scientific @Solana Beach, CA Celera Genomics Co. Centocor, Inc. Chimaera Genomics Inc. Chiron Corporation @Emeryville, CA Ciphergen Biosystems, Inc. @Palo Alto, CA Clontech @Palo Alto, California Cognetix, Inc. Cognia Corporation, Inc. CuraGen Corp. @New Haven, CT CYTImmune Sciences @College Park, Maryland deCODE Genetics, Inc. DEKALB Genetics Corp. @DeKalb, IL DepoTech @San Diego, CA Destiny Pharma Ltd. Diedre Moire Corporation, Inc. @Robbinsville, N.J. DGT- Digital Gene Technologies, Inc. Display Systems Biotechnology Diversa Corporation @San Diego, CA DNASTAR @Madison, WI DoubleTwist, Inc. (Pangea Systems) DuPont @Wilmington, DE eBioinformatics Eli Lilly @Indianapolis, Indiana Emerald BioStructures, Inc. EnCompass Entelechon GmbH Enzon, Inc. Epicentre @Madison, WI Epidauros Biotechnologie AG Eppendorf EraGen Biosciences EVOTEC BioSystems AG Evolutionary BioInformatics Exelixis Pharmaceuticals, Inc. @San Francisco, CA Fermentas Fisher Scientific GelTex Pharmaceuticals Inc. Genaissance Pharmaceuticals, Inc. Genamics GeneBio Geneva Bioinformatics SA Genencor International Inc. GCG Gene Codes Corporation Gene Data @Basel, Switzerland Gene-IT @France Genentech, Inc @San Francisco, California GÉNÉTHON @Evry, FRANCE Genetics Institute @Cambridge, MA GENETYX @Japan Genomatix Software GmbH Genome Systems Genomic Solutions, Inc. Genomica Corporation Genset GS Genome Systems Inc. GTC Genome Therapeutics Co. @Waltham, MA GENOMYX @Palo Alto, CA Gen-Probe Incorporated @San Diego, CA GENSET Genetrace @Alameda, CA Geron Co. Genzyme

Geospiza, Inc. @Seattle, WA Gilead Sciences @Foster City, CA Glaxo Wellcome @London, UK Glen Research Corporation @Sterling, VA Gryphon Sciences Helix Biopharma Co. Hitachi Hitachi USA Genetic Systems HRI - Helix Research Institute, Inc. @JP Hoechst Marion Roussel @Bridgewater, NJ Human Genome Sciences Inc. (HGSI) @Rockville, MD Hybaid @Middlesex, UK Hybrigenics SA Hyseq Inc. @Sunnyvale, CA ICOS Corp. @Bothell, WA IGEN, Inc @Gaithersburg, MD Immunetics, Inc. @Cambridge, MA Incyte Pharmaceuticals Inc. @Palo Alto, CA InforMax, Inc. @North Bethesda, MD Inpharmatica Integrated Genomics @Chicago, IL Chimaera Genomics @Chicago, IL Invitrogen Lambda-Plus SA LAROVA Biochemie GmbH LSB Large Scale Biology Co. @Rockville, MD Lexicon Genetics Inc. @The Woodlands, TX Life Technologies-GIBCO LION bioscience AG @Heidelberg, Germany Matrix Science Ltd Maxygen, Inc. @Santa Clara, CA Merck & Co. @San Francisco, California MetaXen MDL MDL Information Systems, Inc. MediGenomix GmbH Memorec Medical Molecular Research Cologne GmbH Metaphorics LLC Microcrite Millenium Pharmaceuticals, Inc. @Cambridge, MA Millipore Molecular Dynamics @Sunnyvale, CA MSI Molecular Simulations, Inc. MOLOGEN GmbH MolSoft MONSANTO Myriad Genetics, Inc. NBI National Biosciences NGI National Genetics Institute Neomorphic Software, Inc. NetGenics Net-ID, Inc. New England Biolabs Novagen Novartis Agribusiness Biotechnology Research, Inc. @Basel, Switzerland Novo Nordisk Otsuka Pharmaceutical Co. Oxford Molecular Group Pangea Systems @Palo Alto, CA Paracel, Inc. PAREXEL PathoGenesis Corp. Peptech Ltd. Perkin Elmer @Norwalk, CT Pfizer @Connecticut PharmComm, Inc. PharMingen @San Diego, CA Pharsight Co. Phoretix Pierce Pioneer Hi-Bred International, Inc PremierBiosoft Primm Labs Corp. Promega @Madison, Wisconsin Proteome, Inc. ProteoMetrics PSL Proteome Systems Ltd ProZyme, Inc. QIAGEN GmbH Quintiles Corp. Repligen Co. Research Genetics, Inc. @Huntsville,AL Roche Bioscience @Palo Alto, CA Sanofi-Synthelabo Sequana Therapeutics, Inc. Sequenom Industrial Genomics SeqWrigh Shire Pharmaceuticals Group plc SIGMA SkeleTech Inc. @Kirkland, WA SmithKline Beecham STRATAGENE StressGen Biotechnologies Surfacine Symbios Inc Synomics Ltd SBI Structural Bioinformatics, Inc. TGC The GENOMES.COMpany @St. Paule, MN TimeLogic Corp. Bioinformatics Division THERMOGENESIS CORP @Rancho Cordova, CA TopLab GmbH @Martinsried, Germany TRIAD Tripos Inc. Tularik UVP Ultra-Violet Products Variagenics Vertex Pharmaceuticals WebGenetics WITA Worthington Biochemical Co. Xenometrix, Inc. Xerion Pharmaceuticals GmbH Yamanouchi Pharmaceuticals Co. Zycos, Inc.

PDSP DRUG DATABASE proteins with special motifs @Proteome, Inc. Biocatalysis/Biodegradation Database @Univ of Minnesota DNA-Binding Protein Database Biological Structure Resource ProClass Database Database of macromolecular motions EBI Databases TFSEARCH Searching Transcription Factor Binding Sites GRBase The Growth Regulation Database EGAD the Expressed Gene Anatomy Database @TIGR The I.M.A.G.E Consortium BodyMap Anatomical Expression Database of Human Genes SAGE Serial Analysis of Gene Expression Bioinformatics Databases Genetics and BioMedical Databases CGAP Cancer Genome Anatomy Project Databanks GenBank PIR-Prot SWISS-Prot Protein Data Bank Ribosomal Database Ribosomal Database Project II GenCANS-RDP System for phylogenetic classification of ribosomal RNA sequences The RNA world @IMB Jena The RNase P db The Image Library of Biological Macromolecules Chromatin Structure & Function Page EPD hierarchical classification EcoCyc Basal Transcription Factors American Crystallographic Association FlyBase The World-Wide Web Virtual Library: Biosciences MUTATION DATABASE WEBSITE TransTerm Translational Signal db TransTerm - Species List The Antibody Resource Page Pfam multiple sequence alignments and HMM-profiles of protein domains The rRNA WWW server The RNA Modification Database Nucleic Acid Database Group I Intron Database RNA Secondary Structures Small RNA database The Transgenic/Targeted Mutation Database Developmental Studies Hybridoma Bank The DOE Human Subjects Database EUROPEAN COLLECTION OF ANIMAL CELL CULTURES Viral Diseases of Insects in the Literature (VIDIL) GenLink Telomere Resource Transgenic and Targeted Mutant Animal Database The Tumor Gene Database Clinical Genetics Knowledge Base UW Pathology Cytogenetics Resources & Genome Project Related Tools THE CHROMOSOME ABNORMALITY DATABASE Databases at the National Agricultural Library ACeDB Databases Aberrant Splicing Database Cross-referencing the Genetics of Model Organisms with Mammalian Phenotypes XLocus Database The Dysmorphic Human-Mouse Homology Database (DHMHD) Vertebrate Comparative Database ABIM Organism Databases Model Organism Databases IDEAS Amos' WWW links page Bipartite NLS Locator Nuclear Localization Signal PROSITE query for NLS Nuclear Localization Signals

Protein Motions Database TRANSFAC: Transcription factors db TRRD: Transcription regulatory region db TRRD Database of Transcription Regulatory Regions on Eukaryotic Genomes Hyper-Neuroblast Map Bio Online: Databases and Research Tools GeneCards Biochemistry The Building Blocks of Life Molecular Biology Protocols Vector DB Amino Acid Information HotMolecBase DPInteract: DNA-Proteins interactions db FSSP database all protein chains longer than 30 residues Dali/FSSP Touring Protein fold space SCOPStructural Classification of Proteins Molecules R US Utility ProLinkan integrated database of protein structure, sequence homolog, and functional pattern information ProDom Database Protein Domain db Drosophila Nervous System Index ATCC home page MadBase a Networked Relational Database for Microbial Genomes PhosphoBase phosphorylation sites db PROMISE information on prosthetic centres and metal ions in protein active sites db (@UK) MHCPEP MHC-binding peptides db (@Australia) OOTFD Object Orianted Transcription Factors db PLACE plant cis-acting regulatory DNA elements db (@Japan) EPD Eukaryotic Promoter db Codon Usage tabulated from the international sequence dbs (@Japan) SWISS-2DPAGE ISSD Integrated Sequence-Structure db Blocks for protein homology detection PRINTS protein fingerprint db (@UK) IMGT international ImMunoGeneTics db SV40 large tumor antigen db E1A adenovirus 5 E1A mutations db MUTBASE mutation spectra db for bacterial and mammalian genes EpoDB db of genes expressed during vertebrate erythropoiesis HGMD Human gene mutation db Haemophilia B db of point mutations and short additions and deletions RNA modification db UTRdb a specialized db of 5' and 3'-untranslated regions of eukaryotic mRNAs (@Italy) The viroid and viroid-like RNA db LSU-rRNA db on the structure of large ribosomal subunit RNA SSU-rRNA db on the structure of small ribosomal subunit RNA SRPDB Signal Recognition Particle db U-insertion guide RNA db tmRDB tmRNA Small RNA db 5s rRNA db tRNA compilation of sequences GOBASE Organelle Genome db MGD Mouse Genome db Human mtDNA control region sequences MmtDNA Metazoa mitochondrial DNA variants db mitBASE mitochondrial genome db MITOMAP human mitochondrial genome db IXDB an X-chromosome integrated db HuGeMap a distributed and integrated Human Genome Map db RHdb the Radiation Hybrid db (@EBI) GDB the Human Genome db GIF-DB molecular interactions in Drosophila

Uncharacterized Protein Families @Expacy Protein Families @INFOBIOGEN Protein Family Browser @MIPS AARS @Expacy AARS r-proteins @Expacy Translation Initiation proteins @Expacy 7-transmembrane G-linked receptor entries @Expacy Restriction enzyme and methylase entries @Expacy Classification of metallothioneins @Expacy Metallothioneins @Univ of Zurich Classification of peptidase families @Expacy MEROPS the peptidase database @Babraham Institute, UK Classification of glycosyl hydrolases @Expacy Glycosyl Transferases @CNRS, France Glycoside Hydrolases @CNRS, France Polysaccharide Lyases @CNRS, France Carbohydrate Esterases @CNRS, France Phosphodiesterase gene families Glucuronosyltransferases @Univ of S. Australia Alcohol dehydrogenase nomenclature SNF2 family of proteins by Jonathan A. Eisen Topoisomerases Thyroid Hormone Receptors NRR The Nuclear Receptor Resource Kinesins Chaperonins Cytokines and Receptors Accession numbers for FAD-dependent pyridine nucleotide oxidoreductases Esterases ECCE the E. coli cell envelope database

Protein kinases Protein Kinases RecA by Jonathan A. Eisen G protein-coupled receptors Glucoamylases by Pedro M. Coutinho Mutator transposons by Jonathan A. Eisen Olfactory Receptors The Gonadotropin Releasing Hormones by Jonathan A. Eisen Cytokine Family cDNA Database The Homeobox Page The Cytoskeletal Protein Interactions Database The Chaperonin Home Page PAX family the Cytokines Web Malaria Antigen Database Globin Gene Server LIMB dbase AAA Server Home Page: AAA family of ATPases server Histones Histo :proteins of the Major Histocompatibility Complex (MHC) GPCRDB an information system for G protein-coupled receptors Cytochrome P450 Homepage Gene List for Cell Division @UNIV OF UTAH Gene List for Cell Signaling @UNIV OF UTAH Gene List for Cell Structure @UNIV OF UTAH Gene List for Homeostasis @UNIV OF UTAH Gene List for Gene Expression @UNIV OF UTAH Gene List for Metabolism @UNIV OF UTAH SPAD The Signaling PAthway Database @Japan

WIT2 WIT2-Pro KEGG Genequiz Pedant NCBI Complete Microbial Genomes @INFOBIOGEN Uncomplete Microbial Genomes @INFOBIOGEN SIGMA Blast with unfinished microbial genomes @NCBI Blast protein against the complete genomes OU-ACGT BAGS SALSA COG @NCBI ORF Finder @NCBI GenLang Genomic tools @Sanger centre ExPASy Tools Database Searching @EBI Bioinformatics software @Pasteur Pôle Bio-Informatique Lyonnais @France

NCBI Computational Genomics Group DEAMBULUM BCM Search Launcher The Biology WorkBench @UIUC Molecular Database Searching Gene Discovery Page BCM Search Launcher Bioinformatics IDEAS AllAll: Related peptide sequences The UCL Bioinformatics Server PEDANT MIPS Sequence Analysis on the Web @Jena Genetic Tools Webgene server @Italy ANTHEPROT (ANalyse THE PROTeins) BMERC INFOBIOGEN Protein sequence Homology

Entrez Sequence Retrieval System- SRS ProClass Database ExPASy PROSITE

Query Databases @EBI GeneCards SEQNET DBGET

PSI_BLAST @NCBI BLAST2 @NCBI BLAST @NCBI WU-BLAST2 @EBI Fasta3 @EBI Blast2 FASTA TFASTA BLITZ Database Searches Sequence similarity searches @EBI GenQuest GeneFIND ClustalW BOXSHADE 3.21 MultAlin CLUSTALW @PBIL MULTALIN @PBIL Multiple Alignment @DEAMBULUM Multiple Protein Sequence Analysis @PBIL Consensus Tools for Alignment BCM Search Launcher Divide-and-Conquer Multiple Sequence Alignment DIALIGN 2

GeneDoc The Multiple Alignment Sequence Editor Bio-lirmm / Map123d ToPLign Match-Box Web Server 1.2 VSNS BioComputing Division Multiple Alignment Resource Page AMAS MSA AE2 ALSCRIPT DCSE HOMOCHART MALIGNED MASE MSE NSEQTOOL GDE SeqVu ShadyBox DNA Stacks ProMSED SEAVIEW Alignment Search software @EBI

Pfam @Sanger HMM search in Pfam-A @Sanger Pfam @WU HMM @WU Prodom THE MEME SYSTEM ScanProsite BLOCK MAKER MOTIF Prosite search @PBIL Pattern search @PBIL BIOCCELERATOR @EMBL BCM Search Launcher Blocks WWW Server PRINTS FPAT

Regular Expression Searches of the OWL Database Protein Functional Analysis @BMERC HSSP Protein motifs DBMOTIF PMOTIF Sequence Scan RAMdbP Amino Acids Frequencies @PBIL Helix-Turn-Helix motif prediction @PBIL PATSCAN ProDom Multicoil Paircoils PROSITE FTHOM HOMOL @MIPS

EMP MPW ENZYME @EXPASY Biochemical Pathways @EXPASY The Main Metabolic Pathways on Internet Metabolic Pathways of Biochemistry NetBiochem The Medical Biochemistry Page PATHWAY KEGG

Klotho BRITE Brenda LIGAND EcoCyc SoyBase ACeDB Biochemical Pathways Databases Online-resources: Pathways

PDB @BNL CASP2 @Sanger The Dali server @EBI NDB Biological Structure Resource PDBsum @UK Protein Secondary Structure Prediction @BCM SCOP Macromolecular Structures @EBI CATH Helical Wheel with Java The PredictProtein server @EMBL RasMol Home Page PHD PREDICTION of COIL-COIL @PBIL

PREDICTION of COIL-COIL @PBIL DICROPROT @PBIL Protein Secondary Structure Prediction Macromolecular Structure Query CATH Antibody Structure and Sequence Information Garnier-Robson-Osguthorpe NNPREDICT Protein Structural Analysis @BMERC PREDATOR TMAP BCM Search Launcher Protein Motions Database Image Library of Biological Macromolecules @JENA Secondary structure prediction @PBIL

Phylogeny : Phylip programs @Pasteur Evolution and Phylogeny Software BIONJ: Puzzle: CMSMBR Molcecular Evolution Introduction to Phylogeny Phylogeny and Evolution Taxonomy and Systematics The Bioinformatics Resource software @Stanford AVAILABLE PHYLOGENY PROGRAMS NJplot Unrooted Phylo_win PHYLIP DARWIN Molphy PUZZLE Phylogenetic Tree prediction PAML TreeGen

TreeView RAPDistance MacClade COMPARE 2.0 CAIC Evolutionary Comparisons using Dst Phylogeny and Reconstructing Phylogenetic Trees RDP TreeBase Phylogenetics Software Resources Treetool TREEALIGN MARKOV fastDNAml MOLPHY PARBOOT DISTREE NJPLOT PHYLO_WIN

BRITE DOE-MBI Protein Interaction laboratory

DIP Protein-Protein Interactions PSORT Protein-Protein Interaction Server

GeneMark @EBI GeneMark ORNL Grail Form GENSCAN

PROCRUSTES Exon, Intron, and Gene Model Prediction @BCM BCM Gene Finder

LFasta @PBIL Nucleic Acid Sequence Searches @BCM Sequence Utilities @BCM DNA sequence translation ORNL BLITZ Search Form NuclPepSearch PROSITE full text search: DNA Large Dot Plots Correspondence Analysis of Codon Usage RepeatMasker PATSCAN bend.it Oligo Calculator Tm Determination

dbEST Pattern search @PBIL Codons Frequencies @PBIL Ribosomal Database Ribosomal Database Project II GenCANS-RDP System The rRNA www server @Belgium LSU-rRNA SSU-rRNA RNAdraw Sources for RNA Folding Software ESSA The RNA world @IMB Jena SStructView: