SUPERKINGDOM PHYLUM CLASS ORDER FAMILY GENUS SPECIES DOMAIN Organism STRAIN SEROVAR SEQUENCING METHOD SEQUENCING DEPTH STRAININFO Culture SYMBIONT TYPE PHYLOGENY SEQUENCING STATUS PROJECT STATUS PHENOTYPE RELEVANCE DISEASE HABITAT PH OXYGEN REQUIREMENTS CELL SHAPE CELL ARRANGEMENT MOTILITY SPORULATION ENERGY SOURCE TEMPERATURE RANGE TEMPERATURE SALINITY ISOLATION ISOLATION COUNTRY GC(%) AVAILABILITY GOLDSTAMP GOLDSTAMP OLD GREENGENES ID HOMD ID GCAT ID TAXON ID ENTREZ PID IMG OID SIZE(kb) ORFs CHROMOSOMES PLASMIDS DATA DATABASES INSTITUTE FUNDING PUBLICATION DATE CONTACT NAME CONTACT EMAIL Bacteria Firmicutes Clostridiales Clostridia Clostridiales Family XI. Incertae Sedis Finegoldia Finegoldia magna BACTERIAL Finegoldia magna ATCC 29328 Sanger ATCC 29328 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Endocarditis, Opportunistic infection Host, Human skin Anaerobe Coccus-shaped Mesophile abdominal wound Japan 32.3 Public Gc00725 265948 003772_GCAT 334413 18981 641522627 1797 1933 1 1 NC_010376 NCBI, Kyushu Univ Wakayama Medical University, Kyushu Univ, Kitasato Univ JSPS DNA Research 15, 39-47 February 29, 2008 Goto T Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum Ba4 657 Sanger Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Botulism Soil Obligate aerobe Rod-shaped Chains, Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 35 - 40 Infant botulism case in Texas in 1976 USA 28.2 Public Gc01001 Gi03034 003774_GCAT 515621 29077 2977 3785 1 2 NC_012658 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAID, DoD Unpublished May 1, 2009 Brettin T Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Oligotropha Oligotropha carboxidovorans BACTERIAL Oligotropha carboxidovorans OM5 454 27x DSM 1227, ATCC 49405 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published None Rod-shaped Chemolithoautotroph Mesophile USA 62.4 Public Gc00876 Gi03036 003776_GCAT 504832 28805 643348567 3745 3651 1 0 NC_011386 NCBI Mississippi State Univ J. Bacteriology 190, 5531-5532 October 22, 2008 Lawrence ML Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis PB1/+ IB Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Gastroenteritis Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile USA 47.5 Public Gc00776 Gi03038 74815 003777_GCAT 502801 28745 642555171 4695 4334 1 1 NC_010634 NCBI DOE Joint Genome Institute DOE Unpublished April 25, 2008 Nikolich M Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia BACTERIAL Yersinia pseudotuberculosis YPIII O3 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Gastroenteritis Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile USA 47.5 Public Gc00739 Gi03039 261941 003778_GCAT 633 28743 641522661 4689 4396 1 0 NC_010465 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute DOE Unpublished March 11, 2008 Nikolich M Bacteria candidate division TG1 Elusimicrobium Elusimicrobium minutum BACTERIAL Elusimicrobium minutum Pei 191 Protists Genome ELUSIMICROBIA Complete Complete and Published Bioenergy, Biotechnological, Tree of Life None Host, Termite gut Anaerobe Mesophile Pachnoda ephippiata USA 39 Public Gc00773 Gi01567 278595 001008_GCAT 445932 19701 642555127 1643 1596 1 0 NC_010644 NCBI DOE Joint Genome Institute DOE Appl Environ Microbiol. Epub May 2, 2008 Brune A Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii AYE Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Nocosomial infection, Pneumonia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoheterotroph, Heterotroph Mesophile France Public Gc00732 003787_GCAT 509173 28921 641522602 3936 3903 1 4 NC_010410 NCBI Genoscope PLoS ONE 3, e1805 February 26, 2008 Genoscope Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae pv. oryzae PXO99A pv. oryzae Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Rice blight Host Aerobe Rod-shaped Motile Mesophile "5-azacytidineresistant derivative of PXO99, isolated in Los Baqos and classified as Philippine race 6" USA 63.6 Public Gc00778 Gi03042 302284 003782_GCAT 360094 28127 642555170 5240 5048 1 0 NC_010717 NCBI J. Craig Venter Institute, Univ of Maryland - CDCB USDA, NSF, NIH BMC Genomics 9, 204 May 19, 2008 Salzberg S Eukaryota Chordata Primates Mammalia Hominidae Homo EUKARYAL Homo sapiens Nigerian male Illumina Genome CHORDATA-PRIMATES Complete Complete and Published Medical Aerobe Mesophile 36 male Yoruba from Ibadan, Nigeria USA Public Gc00893 Gi03043 003783_GCAT 9606 29429 Illumina Illumina Inc. Nature 456, 53-9 November 6, 2008 Bentley DR Eukaryota Chordata Primates Mammalia Hominidae Homo EUKARYAL Homo sapiens YanHuang No.1 Illumina 34x Genome CHORDATA-PRIMATES Complete Complete and Published Aerobe Mesophile 36 peripheral venous blood China Public Gc00891 Gi03045 003785_GCAT 9606 Beijing Genomics Institute Beijing Genomics Institute, Shenzhen Nature 456, 60-5 November 6, 2008 Wang J Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae BACTERIAL Ketogulonigenium sp. WB0104 Sanger Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Vitamin C production Soil 7.5 - 8.0 Facultative Rod-shaped Motile Mesophile 27 - 29 provided by North Pharmaceutical Group Corporation China 61.7 Public Gc00731 003786_GCAT 92944 2765 2727 1 2 State Key Laboratory, NCPC, CHGB Chinese Science Bulletin 51, 941-945 April 26, 2006 Qi, J Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum E3 Alaska E43 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Botulism Food, Host Anaerobe Rod-shaped Chains, Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 37 Salmon eggs associated with a foodborne case of botulism in Alaska USA 27.4 Public Gc00797 Gi03046 289673 003788_GCAT 508767 28855 642555125 3659 3369 1 1 NC_010723 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute Unpublished May 16, 2008 Brettin T Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum B Eklund 17B Genome FIRMICUTES Complete Complete and Published Medical None Food, Marine Anaerobe Rod-shaped Chains, Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 37 "Marine sediments taken off the coast of Washington, USA" USA 27.5 Public Gc00799 Gi03047 281543 003789_GCAT 508765 28857 641522618 3800 3664 1 1 NC_010674 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute Unpublished May 7, 2008 Brettin T Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli C ATCC 8739 ATCC 8739 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile USA 50 Public Gc00737 003790_GCAT 481805 18083 641522623 4746 4416 1 0 NC_010468 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished March 11, 2008 Ingram L Bacteria Verrucomicrobia Methylacidiphilum Methylacidiphilum infernorum BACTERIAL Methylacidiphilum infernorum V4 Genome VERRUCOMICROBIA Complete Complete and Published None Hot spring Aerobe Methanotroph Thermophile Hell's Gate geothermal area in New Zealand USA 45 Public Gc00812 Gi03053 295454 003803_GCAT 481448 28995 642555138 2287 2521 1 0 NC_010794 NCBI Univ of Hawaii Univ of Hawaii, DoD Biol. Direct 3, 26 May 30, 2008 Alam M Bacteria candidate division TG1 uncultured Termite group 1 bacterium BACTERIAL Candidatus Endomicrobium sp. Rs-D17 42x Reticulitermes speratus Metagenome ELUSIMICROBIA Complete Complete and Published None Gut, Host Mesophile Uncultured, from the wood-feeding termite Reticulitermes speratus in Saitama, Japan Japan 35.2 Public Gc00763 270406 003835_GCAT 471821 20871 1125 761 1 3 NS_000191 NCBI Univ of Tokyo, RIKEN PNAS 105, 5555-60 April 8, 2008 Hongoh Y Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chlorobaculum Chlorobaculum parvum BACTERIAL Chlorobaculum parvum NCIB 8327 NCIB 8327 Genome CHLOROBI Complete Complete and Published None Fresh water Facultative Rod-shaped Singles Photolithotroph Mesophile USA 55.8 Public Gc00827 Gi03087 344812 003839_GCAT 517417 29213 642555120 2289 2133 1 0 NC_011027 NCBI DOE Joint Genome Institute DOE Unpublished June 27, 2008 Bryant D Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides KD131 Sanger KCTC12085 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioenergy, Biohydrogen, Biotechnological, Comparative analysis, Energy production Facultative Rod-shaped Chains Motile Photosynthetic Mesophile 25 - 35 Halophile Sea mud off the coast of DaeBu Island, South Korea Korea 68.7 Public Gc00889 Gi03345 004114_GCAT 557760 31111 643348570 4450 4325 2 2 NC_011963, NC_011958 NCBI GenoTech corp. J Bacteriology 191, 1118-9 November 21, 2008 Lim S-K Bacteria Proteobacteria Neisseriales Betaproteobacteria Neisseriaceae Laribacter Laribacter hongkongensis BACTERIAL Laribacter hongkongensis HLHK9 Sanger Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Gastroenteritis, Opportunistic infection Fish, Host Anaerobe Rod-shaped Motile Nonsporulating Mesophile blood and thoracic empyema of an alcoholic liver cirrhosis patient in Hong Kong China 62.3 Public Gc00966 Gi03363 004132_GCAT 557598 30817 3169 3333 1 0 NC_012559 RATMAP Univ of Hong Kong, Genome Research Centre, HKU PLoS Genetics 5, e1000416 April 14, 2009 Yuen, K-Y Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium leprae BACTERIAL Mycobacterium leprae Br4923 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Leprosy Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 human skin biopsy in Brazil France 57 Public Gc00941 Gi03445 004215_GCAT 561304 31271 643348566 3268 2767 1 0 NC_011896 NCBI Institut Pasteur Unpublished January 10, 2009 Cole ST Bacteria Bacteroidetes Bacteroidales Bacteroidia Candidatus Azobacteroides Candidatus Azobacteroides pseudotrichonymphae BACTERIAL Candidatus Azobacteroides pseudotrichonymphae gv. CFP2 Genome BACTEROIDETES Complete Complete and Published Biotechnological Host Mesophile a single cell of termite (Coptotermes formosanus) gut protist Japan 32 Public Gc00882 360681 004398_GCAT 511995 29025 643348524 1114 758 1 4 NCBI RIKEN Science 322, 1108-9 November 13, 2008 Hongoh Y Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Candidatus Hamiltonella Candidatus Hamiltonella defensa BACTERIAL Candidatus Hamiltonella defensa 5AT Acyrthosiphon pisum Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Host Rod-shaped Mesophile pea aphid Acyrthosiphon pisum USA 40 Public Gc01014 Gi03660 004454_GCAT 572265 31259 2110 2365 1 1 NC_012751 Univ of Arizona PNAS Epub May 5, 2009 Moran NA Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli LF82 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Medical Enterocolitis Host, Human intestinal microflora Facultative Rod-shaped Motile Nonsporulating Mesophile patient with Crohn's disease France 50 Public Gc00963 004931_GCAT 591946 33825 4773 4478 1 0 NC_011993 NCBI Genoscope Unpublished January 23, 2009 Genoscope Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Petrotoga Petrotoga mobilis BACTERIAL Petrotoga mobilis SJ95t 454, Sanger 11.4x Genome THERMOTOGAE Complete Complete and Published Biotechnological, Evolutionary, Oil industry None Marine, Oil fields Anaerobe Rod-shaped Motile Nonsporulating Thermophile Halotolerant Production waters of a North Sea oil reservoir USA 34.1 Public Gc00684 Gi01028 1216 001358_GCAT 403833 17679 641228500 2169 2064 1 0 NC_010003 NCBI DOE Joint Genome Institute DOE Unpublished November 21, 2007 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Delftia Delftia acidovorans BACTERIAL Delftia acidovorans SPH-1 Sanger 12.8x ATCC 15668 Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Oil industry, Wastewater treatment None Fresh water, Oil fields, Sludge, Soil Aerobe Mesophile 30 Soil enriched with acetamide in Delft in the Netherlands USA 66 Public Gc00683 Gi01332 001744_GCAT 398578 17413 641228489 6767 6241 1 0 NC_010002 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished November 21, 2007 Bruce D Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium phytofermentans BACTERIAL Clostridium phytofermentans ISDg Sanger 13x ATCC 700394 Genome FIRMICUTES Complete Complete and Published Biotechnological, Ecological, Energy production, Ethanol production, Hydrogen production None Soil Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 37 Forest soil near the Quabbin Reservoir in Massachusetts USA 35.9 Public Gc00682 Gi00162 000967_GCAT 357809 16184 641228486 4847 4076 1 0 NC_010001 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished November 21, 2007 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS195 Sanger 10x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile 4 Sea-water; anoxic zone; 140 m depth from the Baltic Sea USA 46 Public Gc00681 Gi00964 001489_GCAT 399599 13389 641228507 5347 4992 1 3 NC_009997 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished November 21, 2007 Bruce D Eukaryota Cryptophyta Hemiselmis Hemiselmis andersenii EUKARYAL Hemiselmis andersenii CCMP644 (nucleomorph) Genome PROTISTS Complete Complete and Published Evolutionary Canada Public Gc00680 002361_GCAT 464988 571 3 NC_009979, NC_009977, NC_009978 Dalhousie Univ PNAS 104, 19908-13 November 16, 2007 Archibald JM Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9211 Sanger Genome CYANOBACTERIA Complete Complete and Published Carbon cycle, Environmental, Marine Microbial Initiative (MMI) None Marine Oval-shaped Singles Nonmotile Photosynthetic Mesophile Equatorial Pacific at a depth of 83m on April 1992 USA 38 Public Gc00679 Gi00872 001368_GCAT 93059 13551 641228501 1688 1944 1 0 NC_009976 NCBI, JCVI MIT, J. Craig Venter Institute Moore Foundation Unpublished November 13, 2007 Chisholm S Archaea Euryarchaeota Methanococcales Methanococci Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C6 Genome EURYARCHAEOTA-METHANOCOCCI Complete Complete and Published Biotechnological, Energy production None Fresh water, Sediment 6.5 - 8 Obligate anaerobe Coccus-shaped Singles Motile Nonsporulating Lithotroph Mesophile 20 - 45 Intertidal sediments USA 33 Public Gc00678 Gi01307 40 001820_GCAT 444158 19639 641228496 1744 1917 1 0 NC_009975 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished November 13, 2007 Whitman WB Bacteria Chloroflexi Herpetosiphonales Chloroflexi (class) Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus BACTERIAL Herpetosiphon aurantiacus ATCC 23779 Sanger 11x DSM 785, ATCC 23779 Genome CHLOROFLEXI Complete Complete and Published Biotechnological None Fresh water Aerobe Filament-shaped Motile Mesophile Birch Lake in Minnesota USA 50 Public Gc00677 Gi00947 001142_GCAT 316274 16523 641228494 6346 5402 1 2 NC_009972 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished November 13, 2007 Bruce D Bacteria Proteobacteria Myxococcales Deltaproteobacteria Polyangiaceae Sorangium Sorangium cellulosum BACTERIAL Sorangium cellulosum So ce56 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Clusters, Singles Motile Mesophile Germany 71 Public Gc00676 Gi00561 001504_GCAT 448385 28111 641228509 13033 9771 1 0 NC_010162 NCBI, Bielefeld Univ Bielefeld Univ BMBF Nat Biotechnol. 25, 1281-9 October 28, 2007 Muller R Eukaryota Ascomycota Saccharomycetales Saccharomycetes Candida Candida albicans EUKARYAL Candida albicans SC5314 Sanger 10.9x Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Human Pathogen, Medical Oral infection, Vaginal infection USA 33.4 Public Gc00675 Gi00126 001975_GCAT 237561 10701 640281004 28504 14144 8 0 AACQ00000000 NCBI, Stanford Univ, CandidaDB, Institut Pasteur Stanford Univ NIH-NIDCR, Burroughs Wellcome Fund PNAS 101, 7329-34 May 11, 2004 Davis RW Archaea Crenarchaeota Thermoproteales Thermoprotei Thermoproteaceae Caldivirga Caldivirga maquilingensis ARCHAEAL Caldivirga maquilingensis IC-167 Sanger DSM 13496 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Fresh water Aerobe Rod-shaped Nonmotile Nonsporulating Heterotroph Hyperthermophile 85 Acidic hot spring in the Philippines USA 43 Public Gc00674 Gi01059 203067 001815_GCAT 397948 17421 641228483 2077 2055 1 0 NC_009954 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 5, 2007 House C Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Micromonosporaceae Salinispora Salinispora arenicola BACTERIAL Salinispora arenicola CNS205 Sanger 11.4x Genome ACTINOBACTERIA Complete Complete and Published Biotechnological, Cancer treatment, Medical None Fresh water, Marine, Sediment Aerobe Filament-shaped Motile Sporulating Mesophile Beach sand at a depth of 1 meter from Sweetings Cay in the Bahamas USA 69.5 Public Gc00673 Gi01541 001441_GCAT 391037 17109 641228504 5786 5230 1 0 NC_009953 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 5, 2007 Jensen P Bacteria Proteobacteria Desulfobacterales Deltaproteobacteria Desulfobacteraceae Desulfococcus Desulfococcus oleovorans BACTERIAL Desulfococcus oleovorans Hxd3 454, Sanger 12x DSM 6200 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological, Environmental None Fresh water, Oil fields Anaerobe Coccus-shaped Nonmotile Nonsporulating Mesophile Oil tank USA 56.1 Public Gc00672 Gi01334 257496 001746_GCAT 96561 18007 641228490 3944 3368 1 0 NC_009943 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 19, 2007 Bruce D Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Lachancea Lachancea waltii EUKARYAL Kluyveromyces waltii NCYC 2644 Sanger 8x NCYC 2644, ATCC 56500, CBS 6430, NRRL Y-8285 Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Evolutionary, Fungal Genome Initiative (FGI) None USA Public Gc00671 Gi00717 002033_GCAT 262981 10734 11000 5230 8 0 AADM010000000 NCBI Broad Institute Nature 428, 617-24 April 8, 2004 Kellis, M Eukaryota Apicomplexa Aconoidasida Babesiidae Babesia Babesia bovis EUKARYAL Babesia bovis T2Bo Sanger 11x Genome PROTISTS-APICOMPLEXA Quality Draft Complete and Published USA 41.8 Public Gc00670 Gi02145 002797_GCAT 5865 18731 643280125 8200 3671 4 0 AAXT00000000 J. Craig Venter Institute USDA PLoS Pathog 3, e148 October 19, 2007 Nene VM Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Xanthobacteraceae Azorhizobium Azorhizobium caulinodans BACTERIAL Azorhizobium caulinodans ORS 571 Sesbania rostrata Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural None Host Mesophile Sesbania rostrata Japan 67.3 Public Gc00669 Gi01986 4704 002615_GCAT 438753 19267 641228476 5369 4789 1 0 NC_009937 NCBI Univ of Tokyo Unpublished October 17, 2007 Oyaizu H Eukaryota Hexamitidae Giardia Giardia intestinalis EUKARYAL Giardia lamblia (intestinalis) WB, clone C6 Sanger ATCC 50803 Genome PROTISTS-DIPLOMONADIDA Quality Draft Complete and Published USA 49 Public Gc00668 Gi00274 001866_GCAT 184922 1439 640281002 11192 6598 5 0 NZ_AACB00000000 NCBI, MBL Marine Biological Laboratory NIH-NIAID Science 317, 1921-6 October 1, 2007 Sogin ML Bacteria Cyanobacteria Acaryochloris Acaryochloris marina BACTERIAL Acaryochloris marina MBIC11017 454-GS20, Sanger 6x-ABI, 24x-454 Lissoclinum patella Genome CYANOBACTERIA Complete Complete and Published Biotechnological None Marine Aerobe Sphere-shaped Photosynthetic Mesophile Prochloron-dominated colonial ascidian Lissoclinum patella off the tropical coast of the Palau islands USA 47 Public Gc00667 Gi00728 000610_GCAT 329726 12997 641228474 6503 8557 1 9 NC_009925 NCBI, TGen Arizona State Univ, Washington Univ, TGen NSF PNAS 105, 2005-10 October 17, 2007 Blankenship RE Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Alkaliphilus Alkaliphilus oremlandii BACTERIAL Alkaliphilus (Clostridium) oremlandii OhILAs 454, Sanger 12x Genome FIRMICUTES Complete Complete and Published Biotechnological, Environmental None Fresh water Anaerobe Rod-shaped Motile Sporulating Mesophile Ohio River sediment USA 36 Public Gc00666 Gi00933 161260 000972_GCAT 350688 16083 641228475 2123 3053 1 0 NC_009922 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 11, 2007 Bruce D Eukaryota Streptophyta Vitales Vitaceae Vitis EUKARYAL Vitis vinifera PN40024 Sanger 8.4x Genome PLANTS-STREPTOPHYTA Quality Draft Complete and Published France Public Gc00665 Gi01530 002312_GCAT 29760 18785 475000 19 0 CAAP00000000 NCBI, Genoscope INRA, Univ of Udine, Univ of Milan, Genoscope, Univ of Padua Nature 449, 463-7 September 27, 2007 Wincker P Eukaryota Chlorophyta Chlamydomonadales Chlorophyceae Chlamydomonadaceae Chlamydomonas EUKARYAL Chlamydomonas reinhardtii CC-503 cw92 mt+ Sanger 10x Genome PLANTS-CHLOROPHYTA Quality Draft Complete and Published Massachusetts in 1945 USA 65 Public Gc00664 Gi00816 002199_GCAT 3055 12260 100000 15256 17 0 ABCN00000000 NCBI, DOE Joint Genome Institute, Chlamydomonas Center DOE Joint Genome Institute DOE, NSF Science 318, 245-50 October 12, 2007 Grossman A Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella pealeana BACTERIAL Shewanella pealeana ANG-SQ1, ATCC 700345 Sanger 10x ATCC 700345 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published None Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Psychrotolerant "Microbial community colonizing the accessory nidamental gland of the squid Loligo pealei, from Woods Hole Harbor, Massachusetts" USA 44 Public Gc00663 Gi01355 001772_GCAT 3055 17415 641228508 5174 4599 1 0 NC_009901 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 4, 2007 Bruce D Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia massiliae BACTERIAL Rickettsia massiliae MTU5 Sanger ATCC VR-1376 Rhipicephalus turanicus Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Medical None Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile Rhipicephalus turanicus ticks collected on horses in Camargues, France France 32.5 Public Gc00662 Gi00812 001423_GCAT 416276 18271 641228503 1360 1438 1 1 NC_009900 NCBI CNRS CNRG Genome Res. 17, 1657-64 October 4, 2007 Raoult D Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia bellii BACTERIAL Rickettsia bellii OSU 85-389 Sanger Dermacentor variabilis adult female tick Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Epidemic typhus Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile Isolated in Vero cell culture at 34 C by Karl Poetter and Chip Pretzman; spaghetti forms seen USA 31.6 Public Gc00661 Gi01647 001420_GCAT 391896 17237 640753044 1528 1548 1 0 NC_009883 NCBI Univ of Iowa Unpublished October 2, 2007 Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia canadensis BACTERIAL Rickettsia canadensis McKiel Sanger Tick Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Epidemic typhus Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile Ticks in Canada USA 31 Public Gc00660 Gi01536 001421_GCAT 293613 12952 640753045 1159 1164 1 0 NC_009879 NCBI Univ of Iowa Unpublished October 1, 2007 Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Dinoroseobacter Dinoroseobacter shibae BACTERIAL Dinoroseobacter shibae DFL-12 Sanger 12x DSM 16493, NCIMB 14021 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published None Fresh water Aerobe Motile Phototroph Mesophile 33 Marine dinoflagellates from the Bay of Tokyo USA 65 Public Gc00659 Gi01335 188142 001747_GCAT 398580 17417 641228491 3789 4321 1 5 NC_009952 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 5, 2007 Wagner-Dobler I Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Frankiaceae Frankia Frankia sp. EAN1pec BACTERIAL Frankia sp. Mbj2, EAN1pec Sanger Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Plant symbiont, Soil Aerobe Filament-shaped Nonmotile Sporulating Chemoorganotroph Mesophile Kettering Research Laboratory in Ohio by M Lalonde in 1978 USA 70.9 Public Gc00658 Gi00260 001091_GCAT 298653 13915 641228492 9035 7306 1 0 NC_009921 NCBI, FrankiaGenomes, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 10, 2007 Bruce D Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Arcobacter Arcobacter butzleri BACTERIAL Arcobacter butzleri RM4018 Sanger 5.5x Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Human Pathogen, Medical Bacteremia, Gastroenteritis Fresh water, Host, Marine Aerobe Spiral-shaped Motile Nonsporulating Mesophile 28 Human patient with gastroenteritis USA 27 Public Gc00657 245824 003099_GCAT 367737 16319 640753004 2341 2347 1 0 NC_009850 NCBI ARS-USDA, Agencourt Bioscience USDA PLoS ONE 2, e1358 September 27, 2007 Miller WG Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus pumilus BACTERIAL Bacillus pumilus SAFR-032 Genome FIRMICUTES Complete Complete and Published Bioenergy, Biotechnological, Medical None Soil Aerobe Rod-shaped Motile Sporulating Mesophile Spacecraft Assembly Facility at NASA Jet Propulsion Laboratory USA 41.3 Public Gc00656 Gi00716 251227 000741_GCAT 315750 20391 640753007 3704 3913 1 0 NC_009848 NCBI, BCM-HGSC BCM-HGSC NSF PLoS ONE 2, e928 September 26, 2007 Highlander, SK Eukaryota Chordata Primates Mammalia Hominidae Homo EUKARYAL Homo sapiens JC Venter Sanger 7.5x Genome CHORDATA-PRIMATES Quality Draft Complete and Published Medical Aerobe Mesophile 36 Sperm and white blood cells of a single Human individual USA Public Gc00655 Gi02160 002812_GCAT 9606 19621 2782357 24 0 ABBA01000000 NCBI, Ensembl J. Craig Venter Institute PLoS Biology 5, e254 September 21, 2007 Levy S Eukaryota Ascomycota Hypocreales Sordariomycetes Nectriaceae Gibberella Gibberella zeae EUKARYAL Fusarium (Gibberella) graminearum (zeae) PH-1 Sanger 10x NRRL 31084 Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Agricultural, Fungal Genome Initiative (FGI), Plant Pathogen Head blight Mesophile USA 48.3 Public Gc00654 Gi00263 002010_GCAT 229533 13839 640281006 36331 11640 4 0 AACM02000000 NCBI, Broad Institute IGGR, Broad Institute NRI Science 317, 1400-2 September 7, 2007 Webmaster Eukaryota Nematoda Spirurida Chromadorea Onchocercidae Brugia EUKARYAL Brugia malayi NIAID/TRS Sanger Genome NEMATODES Quality Draft Complete and Published Mesophile USA 30.5 Public Gc00653 Gi00102 002123_GCAT 6279 10729 90000 11500 6 0 AAQA00000000 NCBI, NematodeNet, J. Craig Venter Institute Univ of Pittsburgh, J. Craig Venter Institute NIH-NIAID Science 317, 1756 - 1760 September 21, 2007 Ghedin E Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81116 Sanger 30x NCTC 11828 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Human Pathogen, Medical Food poisoning Wastewater Microaerophilic Spiral-shaped Chains, Singles Motile Nonsporulating Mesophile Waterborne outbreak in 1982 United Kingdom 30 Public Gc00652 Gi01671 000823_GCAT 407148 17953 640753013 1628 1734 1 0 NC_009839 NCBI BBSRC J. Bacteriology 189(22):8402-3 September 20, 2007 Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9215 454, Sanger 20x Genome CYANOBACTERIA Complete Complete and Published Carbon cycle, Environmental None Marine Oval-shaped Singles Nonmotile Photosynthetic Mesophile 5m depth at Equatorial Pacific on October 1992 USA 31.1 Public Gc00651 Gi01896 001369_GCAT 93060 18633 640753041 1738 2098 1 0 NC_009840 NCBI DOE Joint Genome Institute DOE PLoS Genetics 3, e231 September 20, 2007 Chisholm S Bacteria Chloroflexi Chloroflexales Chloroflexi (class) Chloroflexaceae Roseiflexus Roseiflexus castenholzii BACTERIAL Roseiflexus castenholzii HLO8, DSM 13941 Sanger 10x DSM 13941 Genome CHLOROFLEXI Complete Complete and Published Biotechnological None Hot spring, Marine Facultative Filament-shaped Motile Nonsporulating Photoautotroph, Photosynthetic Thermophile 50 Hot spring microbial mat USA 60.7 Public Gc00650 Gi00962 193341 001429_GCAT 383372 13462 640753047 5723 4559 1 0 NC_009767 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished August 13, 2007 Bruce D Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Thermotoga Thermotoga lettingae BACTERIAL Thermotoga lettingae TMOT Sanger Genome THERMOTOGAE Complete Complete and Published Biotechnological, Evolutionary None Fresh water Anaerobe Rod-shaped Motile Nonsporulating Heterotroph Thermophile 65 "Methanol-degrading, sulfate-reducing bioreactor" USA 38.7 Public Gc00649 Gi01044 239729 001609_GCAT 416591 15644 641228511 2135 2141 1 0 NC_009828 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 18, 2007 Bruce D Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Vanderwaltozyma Vanderwaltozyma polyspora EUKARYAL Vanderwaltozyma polyspora DSM 70294 Sanger 7.8x DSM 70294 Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Evolutionary Mesophile Ireland 33 Public Gc00648 Gi02041 002688_GCAT 436907 19237 14661 5367 NZ_AAZN00000000 NCBI Trinity College PNAS 104, 8397-8402 August 17, 2007 Wolfe KH Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Serratia Serratia proteamaculans BACTERIAL Serratia proteamaculans 568 Sanger 11.7x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental, Human Pathogen, Medical Pneumonia Host, Soil Facultative Rod-shaped Motile Mesophile USA 55 Public Gc00647 Gi01353 242207 001770_GCAT 399741 17459 640753048 5448 5170 1 1 NC_009832 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 18, 2007 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella sediminis BACTERIAL Shewanella sediminis HAW-EB3 Sanger NCIMB 14036, DSM 17055 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Degrades RDX None Marine Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Psychrophile 10 Sediment at depth of 215m from an unexploded-ordinance-dumping site at Halifax USA 46 Public Gc00646 Gi01356 001773_GCAT 425104 18789 640753050 5517 4828 1 0 NC_009831 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 18, 2007 Bruce D Eukaryota Cnidaria Actiniaria Anthozoa Edwardsiidae Nematostella EUKARYAL Nematostella vectensis CH2 x CH6 Sanger 7.8x Genome CNIDARIA Quality Draft Complete and Published Model organism Mesophile USA 40.6 Public Gc00645 Gi00773 002244_GCAT 45351 12581 297398 NZ_ABAV00000000 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Science 317, 86-94 August 22, 2007 Rokhsar D Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter concisus BACTERIAL Campylobacter concisus 13826 Sanger Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Human Pathogen, Medical Gastroenteritis, Gingivitis, Periodontitis, Periodontosis Host, Wastewater Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Mesophile Feces of a patient with bloody diarrhea in Denmark USA 39.3 Public Gc00644 Gi01266 172688 000829_GCAT 360104 17159 640753009 2052 2235 1 2 NC_009802 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished September 12, 2007 Nelson KE Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus gordonii BACTERIAL Streptococcus gordonii Challis CH1 ATCC 35105, NCTC7868 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Dental plaque, Endocarditis, Periodontal infection Host, Human oral microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 37 USA 42 Public Gc00643 Gi00608 244708 001537_GCAT 467705 66 640753055 2196 2220 1 0 NC_009785 NCBI J. Craig Venter Institute NIH-NIDCR Unpublished September 11, 2007 Gill SR Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Citrobacter Citrobacter koseri BACTERIAL Citrobacter koseri CDC 4225-83 Sanger 8x ATCC BAA-895, SGSC4696 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bacteremia, Brain abscesses, Meningoencephalitis, Neonatal meningitis Food, Fresh water, Host, Intestinal microflora, Soil Facultative Motile Mesophile 1983 in Maryland where it caused neonatal meningitis USA 53.8 Public Gc00642 Gi00708 000962_GCAT 290338 12716 640753015 4720 5252 1 2 NC_009792 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished September 11, 2007 Clifton S Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O139:H28 E24377A (ETEC) O139:H28 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Diarrhea Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 USA 50 Public Gc00641 Gi00940 241150 001030_GCAT 331111 13960 640753024 4979 5280 1 6 NC_009801 NCBI J. Craig Venter Institute Unpublished September 11, 2007 Ravel J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O9 HS O9 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Diarrhea Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile Walter Reed Army Institute of Research in 1978 USA 50 Public Gc00640 Gi01140 245369 001037_GCAT 331112 13959 640753025 4643 4650 1 0 NC_009800 NCBI J. Craig Venter Institute NIH-NIAID Unpublished September 10, 2007 Ravel J Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu3 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Mastitis, Nosocomial infection Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Japan 32.9 Public Gc00639 248084 003050_GCAT 418127 18509 640753053 2880 2792 1 0 NC_009782 NCBI, Juntendo Univ Juntendo Univ Unpublished September 4, 2007 Hiramatsu K Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Cronobacter Enterobacter sakazakii BACTERIAL Enterobacter sakazakii ATCC BAA-894 Sanger 8x ATCC BAA-894 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Meningitis, Necrotizing enterocolitis, Septicemia Host Facultative Rod-shaped Motile Mesophile 37 Powdered milk formula fed to a hospitalized neonate that developed an infection USA 87 Public Gc00638 Gi00537 001451_GCAT 290339 12720 640753022 4368 4653 1 2 NC_009778 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished August 28, 2007 Clifton S Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Vibrio Vibrio harveyi BACTERIAL Vibrio harveyi BB120, ATCC BAA-1116 454, Sanger 10.8x ATCC BAA-1116 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Environmental None Marine Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 20 - 30 Ocean isolate obtained in 1993 USA 85 Public Gc00637 Gi01254 001691_GCAT 338187 19857 640753058 5969 6373 2 1 NC_009784, NC_009783 NCBI, Washington Univ Princeton Univ, Washington Univ NSF Unpublished August 28, 2007 Bassler B Archaea Crenarchaeota Desulfurococcales Thermoprotei Desulfurococcaceae Ignicoccus Ignicoccus hospitalis ARCHAEAL Ignicoccus hospitalis Kin4/I, DSM 18386 Sanger 12x DSM 18386 Nanoarchaeum equitans Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Hydrothermal vent, Marine Anaerobe Coccus-shaped Motile Nonsporulating Chemolithoautotroph Hyperthermophile "Shallow marine hydrothermal system of the Kolbeinsey Ridge, north of Iceland" USA 61.2 Public Gc00636 Gi01875 252944 001809_GCAT 453591 13914 640753029 1297 1544 1 0 NC_009776 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Genome Biology 9(11):R158 August 29, 2007 Podar M Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica FTA Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Tularemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile Patient with type B tularemia USA 32 Public Gc00635 Gi02287 238154 003009_GCAT 458234 20197 640753028 1890 2179 1 0 NC_009749 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute, BioHealthBase Unpublished August 23, 2007 Brettin T Bacteria Proteobacteria Legionellales Gammaproteobacteria Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii Dugway 5J108-111 (7E9-12) Sanger 15.07x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Food poisoning, Q fever Host Facultative Coccus-shaped Singles Motile Sporulating Mesophile Rodents in Utah USA 42 Public Gc00634 Gi01269 000983_GCAT 382253 16721 640753021 2158 2301 1 1 NC_009727 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Infect Immun. Epub August 1, 2007 Samuel JE Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus amyloliquefaciens BACTERIAL Bacillus amyloliquefaciens FZB42 Genome FIRMICUTES Complete Complete and Published Agricultural, Antibiotic production, Biotechnological, Suppresses Plant Pathogens None Rhizosphere-colonizing, Soil Aerobe Rod-shaped Sporulating Mesophile Soil Germany 46 Public Gc00633 Gi00049 242694 000711_GCAT 326423 13403 640753005 3918 3834 1 0 NC_009725 NCBI, Goettingen Genomics Laboratory Goettingen Genomics Laboratory, Competence Network Nature Biotechnol 25, 1007-14 August 1, 2007 Borriss R Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Xanthobacteraceae Xanthobacter Xanthobacter autotrophicus BACTERIAL Xanthobacter autotrophicus Py2 Sanger 12x ATCC 35674, DSM 432 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Environmental None Fresh water, Sediment, Soil Facultative Rod-shaped Motile Mesophile USA 67 Public Gc00632 Gi00972 246824 001697_GCAT 78245 15756 640753059 5308 5211 1 1 NC_009720 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 30, 2007 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Phyllobacteriaceae Parvibaculum Parvibaculum lavamentivorans BACTERIAL Parvibaculum lavamentivorans DS-1 Sanger 17.5x DSM 13023, NCIMB 13966 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological None Sludge Aerobe Rod-shaped Motile Heterotroph Mesophile 30 Sewage treatment plant in Germany USA 62 Public Gc00631 Gi01347 101358 001764_GCAT 402881 17639 640753040 3914 3752 1 0 NC_009719 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 30, 2007 Bruce D Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Fervidobacterium Fervidobacterium nodosum BACTERIAL Fervidobacterium nodosum Rt17-B1 Sanger 11.5x Genome THERMOTOGAE Complete Complete and Published Biotechnological, Evolutionary None Fresh water, Hot spring Anaerobe Rod-shaped Motile Nonsporulating Chemoorganotroph Thermophile 70 Hot spring in New Zealand USA 34 Public Gc00630 Gi01012 241363 001054_GCAT 381764 16719 640753026 1948 1895 1 0 NC_009718 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 30, 2007 Bruce D Archaea Euryarchaeota Methanomicrobiales Methanomicrobia Candidatus Methanoregula Candidatus Methanoregula boonei ARCHAEAL Candidatus Methanoregula boonei 6A8 Sanger Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Energy production None Fresh water 4 - 6 Anaerobe Rod-shaped Lithotroph Mesophile 37 Acidic peat bog in New York State USA 54 Public Gc00629 Gi01473 243787 001806_GCAT 456442 18505 640753014 2542 2568 1 0 NC_009712 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 26, 2007 Bruce D Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter curvus BACTERIAL Campylobacter curvus 525.92 Sanger Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Human Pathogen, Medical Gastroenteritis, Periodontal infection Host, Wastewater Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Mesophile Feces of a patient with diarrhea in South Africa USA 44 Public Gc00628 Gi01267 165799 000830_GCAT 360105 17161 640753010 1971 2163 1 0 NC_009715 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished July 25, 2007 Nelson K Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter hominis BACTERIAL Campylobacter hominis ATCC BAA-381 Sanger ATCC BAA-381, NCTC 13146T, LMG 19568T Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Medical None Gastrointestinal tract, Host Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Mesophile 37 Feces of a healthy human in 2001 USA 31 Public Gc00627 Gi01268 246717 000831_GCAT 360107 20083 640753011 1711 1850 1 1 NC_009714 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished July 25, 2007 Nelson K Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni doylei 269.97 Sanger Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Poultry Pathogen Bacteremia Blood, Host, Wastewater Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Mesophile Human blood USA 30 Public Gc00626 Gi01293 170358 000828_GCAT 360109 17163 640753012 1845 2083 1 0 NC_009707 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished July 20, 2007 Nelson K Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis IP 31758 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR on 1996 USA 47 Public Gc00625 Gi01174 001723_GCAT 349747 16070 640753060 4723 4599 1 2 NC_009708 NCBI J. Craig Venter Institute NIH-NIAID PLoS Genetics 3(8), e142 July 23, 2007 Ravel J Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium kluyveri BACTERIAL Clostridium kluyveri DSM 555 454-GS20, Sanger 6.8x DSM 555 Genome FIRMICUTES Complete Complete and Published Biotechnological None Fresh water, Mud Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile "Mud of a canal in Delft, The Netherlands" Germany 32 Public Gc00624 Gi01951 002577_GCAT 431943 19065 640753020 3964 4075 1 1 NC_009706 NCBI Goettingen Genomics Laboratory, Max Planck Institute PNAS 105, 2128-33 July 19, 2007 Thauer RK Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum A BoNT/A1 ATCC 19397 Sanger ATCC 19397 Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Botulism Soil Obligate anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 35 - 40 Laboratory strain probably from foodborne botulism cases in the western US USA 28 Public Gc00623 Gi01979 248269 002606_GCAT 441770 19517 640753017 3863 3799 1 0 NC_009697 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAID, DoD PLoS ONE 2, e1271 July 20, 2007 Brettin T Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum F Langeland Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Botulism Host Obligate anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 37 Home-prepared liver paste involved in an outbreak of foodborne botulism on the island of Langeland in Denmark in 1958 USA 28 Public Gc00622 Gi01981 002608_GCAT 441772 19519 640753019 3885 3961 1 1 NC_009699 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute Unpublished July 20, 2007 Brettin T Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum A BoNT/A1 Hall Sanger Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Botulism Soil Obligate anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 35 - 40 Harvard University in 1947 USA 28 Public Gc00621 Gi01980 002607_GCAT 441771 19521 640753018 3760 3713 1 0 NC_009698 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute DOE, NIH-NIAID, DoD PLoS ONE 25, 1281-9 July 20, 2007 Brettin T Bacteria Proteobacteria Epsilonproteobacteria Sulfurovum Sulfurovum sp. NBC37-1 BACTERIAL Sulfurovum sp NBC37-1 Sanger 8x Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Environmental None Deep sea, Hydrothermal vent, Marine Anaerobe Rod-shaped Nonmotile Chemolithoautotroph Thermophile 30-m-tall sulfide mound in the Iheya North field, Japan (water depth, 1,000 m) Japan 43 Public Gc00620 002992_GCAT 387093 18965 640753056 2562 2524 1 0 NC_009663 NCBI JAMSTEC MEXT PNAS 104, 12146-50 July 20, 2007 Nakagawa S Bacteria Proteobacteria Epsilonproteobacteria Nitratiruptor Nitratiruptor sp. SB155-2 BACTERIAL Nitratiruptor sp SB155-2 Sanger Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Environmental None Deep sea, Hydrothermal vent, Marine Anaerobe Rod-shaped Nonmotile Chemolithoautotroph Thermophile 30-m-tall sulfide mound in the Iheya North field, Japan Japan 39 Public Gc00619 002991_GCAT 387092 18963 640753037 1877 1959 1 0 NC_009662 NCBI JAMSTEC MEXT PNAS 104, 12146-50 July 20, 2007 Nakagawa S Bacteria Proteobacteria Myxococcales Deltaproteobacteria Myxococcaceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5 BACTERIAL Anaeromyxobacter sp Fw109-5 Sanger Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Environmental None Soil Anaerobe Rod-shaped Motile Sporulating Heterotroph Mesophile USA 74 Public Gc00618 Gi01322 179879 001731_GCAT 404589 17729 640753003 5277 4603 1 0 NC_009675 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 17, 2007 Bruce D Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus cytotoxis NVH 391-98 Sanger 10x Genome FIRMICUTES Complete Complete and Published Medical None Soil Facultative Rod-shaped Motile Sporulating Psychrotolerant International 35.9 Public Gc00617 Gi00792 242541 000735_GCAT 315749 13624 640753006 4087 4308 1 1 NC_009674 NCBI, DOE Joint Genome Institute INRA, DOE Joint Genome Institute DOE Unpublished July 17, 2007 Sorokin A Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Ochrobactrum Ochrobactrum anthropi BACTERIAL Ochrobactrum anthropi ATCC 49188 Sanger ATCC 49188 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Meningitis Host, Sludge, Soil Aerobe Rod-shaped Motile Mesophile USA 56 Public Gc00616 Gi01920 251840 002544_GCAT 439375 19485 640753038 4783 4999 2 4 NC_009668, NC_009667 NCBI Lawrence Livermore National Lab, DOE Joint Genome Institute DOE Unpublished July 10, 2007 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Kineosporiaceae Kineococcus Kineococcus radiotolerans BACTERIAL Kineococcus radiotolerans SRS30216 Sanger ATCC BAA-149, DSM 14245 Genome ACTINOBACTERIA Complete Complete and Published Bioremediation, Environmental None Fresh water 5 - 9 Aerobe Coccus-shaped Motile Nonsporulating Mesophile High-level radioactive waste cell at the Savannah River Site in Aiken of South Carolina in 2002 USA 74.2 Public Gc00615 Gi00303 001145_GCAT 266940 10689 640753031 4761 4832 1 2 NC_009664 NCBI, DOE Joint Genome Institute Savannah River Site, DOE Joint Genome Institute DOE Unpublished July 10, 2007 Fliermans C Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS185 Sanger 10x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Psychrotolerant 4 Sea-water; oxicanoxic interface; 120 m depth from the Baltic Sea USA 51 Public Gc00614 Gi01655 255231 001490_GCAT 402882 17643 640753049 5229 4732 1 1 NC_009665 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 10, 2007 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Oxalobacteraceae Janthinobacterium BACTERIAL Janthinobacterium sp. Marseille Sanger 9x CIP 107820, CCUG 50593 Genome PROTEOBACTERIA-BETA Complete Complete and Published Environmental, Medical None Fresh water Rod-shaped Motile Mesophile 30 Solution used in kidney dialysis France 54.2 Public Gc00613 Gi01533 252382 001144_GCAT 375286 16549 640753030 4110 3802 1 0 NC_009659 NCBI CNRS PLoS Genet 3(8), e138 July 6, 2007 Audic, S Bacteria Proteobacteria Oceanospirillales Gammaproteobacteria Oceanospirillaceae Marinomonas Marinomonas sp. MWYL1 BACTERIAL Marinomonas sp MWYL1 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Environmental None Marine Aerobe Rod-shaped Motile Mesophile USA 42.5 Public Gc00612 Gi01340 181319 001755_GCAT 400668 17445 640753033 5100 4706 1 0 NC_009654 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 5, 2007 Bruce D Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PA7 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Animal Pathogen, Human Pathogen, Medical, Plant Pathogen Opportunistic infection Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 25 - 30 clinical isolate USA 66 Public Gc00611 Gi01274 250956 001382_GCAT 381754 16720 640753042 6588 6446 1 0 NC_009656 NCBI, Pseudomonas Genome DBase J. Craig Venter Institute NIH-NIAID Unpublished July 5, 2007 Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Actinobacillus Actinobacillus succinogenes BACTERIAL Actinobacillus succinogenes 130Z Sanger 10x ATCC 55618 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Succinic-acid production None Bovine rumen, Host Facultative Rod-shaped Mesophile Bovine rumen USA 44 Public Gc00610 Gi00920 139012 000646_GCAT 339671 13370 640753001 2319 2276 1 0 NC_009655 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 5, 2007 Bruce D Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae MGH78578 Sanger ATCC 700721 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Bacteremia, Pneumonia, Urinary tract infection Fresh water, Host, Intestinal microflora, Mouth microflora, Skin microflora, Soil Facultative Rod-shaped Nonmotile Mesophile 37 Patient in 1994 USA 40 Public Gc00609 Gi00306 248427 001147_GCAT 272620 31 640753032 5315 5417 1 5 NC_009648 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished July 5, 2007 Clifton S Eukaryota Streptophyta Malpighiales Salicaceae Populus EUKARYAL Populus balsamifera trichocarpa Sanger 7.5x Genome PLANTS-STREPTOPHYTA Quality Draft Complete and Published Agricultural Mesophile USA 33.7 Public Gc00608 Gi00477 002292_GCAT 3694 10772 550000 45000 10 0 NC_008467-85 NCBI, Ume Univ, DOE Joint Genome Institute Swedish Univ of Agricultural Sciences, DOE Joint Genome Institute, Genome Canada, Univ of Washington, Oak Ridge National Lab DOE Science 313, 1596-604 September 15, 2006 Tuskan GA Eukaryota Peronosporales Phytophthora EUKARYAL Phytophthora sojae P6497 Sanger Genome PROTISTS-STRAMENOPILES Quality Draft Complete and Published Agricultural, Plant Pathogen Root rot Mesophile USA Public Gc00607 Gi00452 002165_GCAT 67593 17989 62000 AAQY00000000 NCBI, DOE Joint Genome Institute Virginia Polytechnic Institute, DOE Joint Genome Institute DOE, USDA, NSF Science 313, 1261-6 September 1, 2006 Tyler B Eukaryota Peronosporales Phytophthora EUKARYAL Phytophthora ramorum Pr102, UCD Pr4 Sanger 7x Genome PROTISTS-STRAMENOPILES Quality Draft Complete and Published Agricultural, Plant Pathogen Sudden Oak Death Mesophile USA Public Gc00606 Gi00450 002164_GCAT 164328 12571 65000 15743 AAQX00000000 NCBI, DOE Joint Genome Institute Virginia Polytechnic Institute, DOE Joint Genome Institute DOE, USDA, NSF Science 313, 1261-6 September 1, 2006 Tyler B Eukaryota Peniculida Oligohymenophorea Parameciidae Paramecium Paramecium tetraurelia EUKARYAL Paramecium tetraurelia d4-2 Sanger 13x Genome PROTISTS-ALVEOLATA Quality Draft Complete and Published Model organism Mesophile France Public Gc00605 Gi00432 001904_GCAT 412030 18363 200000 40000 CAAL01000000 NCBI, Genoscope, CNRS Genoscope, International Consortium Nature 444, 171-8 November 9, 2005 Sperling L Eukaryota Chordata Primates Mammalia Hominidae Pan EUKARYAL Pan troglodytes Yerkes chimp pedigree #C0471 Sanger 3.6x Genome CHORDATA-PRIMATES Quality Draft Complete and Published Mesophile captive-born descendant of chimpanzees from the West Africa International Public Gc00604 Gi00424 002502_GCAT 9598 12552 3100000 48910 24 NC_006468-92 NCBI, BCM-HGSC, Washington Univ BCM-HGSC, Washington Univ, Broad Institute NIH-NHGRI Nature 437, 69-87 September 1, 2005 Gibbs R Eukaryota Streptophyta Poales Liliopsida Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa ssp. japonica Sanger 10x Genome PLANTS-STREPTOPHYTA Quality Draft Complete and Published Agricultural None Mesophile International 43 Public Gc00603 Gi00421 002272_GCAT 39947 13141 360785 37544 12 0 NC_008394-405 NCBI, Cold Spring Harbor Laboratory, KOREA, J. Craig Venter Institute, Rutgers Univ, RGP, TAIWAN, CUGI, CHINA IRGSP, J. Craig Venter Institute, Genoscope, CUGI Nature 436, 793-800 August 11, 2005 Sasaki T Eukaryota Chordata Didelphimorphia Mammalia Didelphidae Monodelphis EUKARYAL Monodelphis domestica pop1 Sanger Genome CHORDATA-MAMMALS Quality Draft Complete and Published Mesophile USA Public Gc00602 Gi00375 002470_GCAT 13616 12561 19022 9 0 AAFR00000000 NCBI, NHGRI, NISC-NIH Washington Univ, Broad Institute NIH-NHGRI Nature 447, 167-77 May 10, 2007 Lindblad-Toh, K Eukaryota Ascomycota Sordariomycetes Magnaporthaceae Magnaporthe Magnaporthe grisea EUKARYAL Magnaporthe grisea 70-15 Sanger 7x Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Agricultural, Fungal Genome Initiative (FGI), Plant Pathogen Rice blast USA 51.7 Public Gc00601 Gi00342 002041_GCAT 242507 13840 640281007 37800 13146 7 0 NZ_AACU00000000 NCBI, North Carolina State Univ, Broad Institute North Carolina State Univ, Broad Institute USDA, NSF Nature 434, 980-6 April 21, 2005 Dean RA Eukaryota Chordata Primates Mammalia Cercopithecidae Macaca EUKARYAL Macaca mulatta Sanger 6x Genome CHORDATA-PRIMATES Quality Draft Complete and Published Mesophile USA 40.7 Public Gc00600 Gi00340 002485_GCAT 9544 12537 2871189 34023 22 0 NC_007858-78 NCBI, NHGRI, BCM-HGSC, Washington Univ BCM-HGSC, J. Craig Venter Institute, Washington Univ NCRR, NIH-NHGRI Science 316, 222-34 April 13, 2007 Gibbs R Eukaryota Chordata Galliformes Aves Phasianidae Gallus EUKARYAL Gallus gallus BN/SsNHsdMCW Sanger 6.6x Genome CHORDATA-BIRDS Quality Draft Complete and Published Mesophile International Public Gc00599 Gi00267 002426_GCAT 9031 13342 1000000 15419 40 0 NC_006088-119 NCBI, Sanger Institute, ChickNET, ChickBASE, Roslin Institute, Washington Univ Sanger Institute, Roslin Institute, Washington Univ NIH-NHGRI Nature 432, 695-716 December 9, 2004 Contact Eukaryota Arthropoda Diptera Insecta Drosophilidae Drosophila Drosophila pseudoobscura EUKARYAL Drosophila pseudoobscura MV2-25 Sanger 9.1x Genome ARTHROPODA Quality Draft Complete and Published Mesophile USA 45.2 Public Gc00598 Gi00206 002351_GCAT 7237 10626 147433 9946 4 0 NZ_AADE00000000 NCBI, NHGRI, BCM-HGSC BCM-HGSC NIH-NHGRI Genome Res. 15, 1-18 January 8, 2005 Richards S Eukaryota Chordata Carnivora Mammalia Canidae Canis Canis lupus EUKARYAL Canis lupus familiaris boxer Sanger 7.6x Genome CHORDATA-MAMMALS Quality Draft Complete and Published Model organism Mesophile USA Public Gc00597 Gi00132 002440_GCAT 9615 13179 2400000 19300 39 0 AAEX00000000, NC_006583-621 NCBI, NHGRI, Berkeley Univ, Broad Institute, FHCRC Fred Hutchinson Cancer Research Center, Univ of Oregon, Broad Institute, Agencourt Bioscience, Univ of California, Berkeley NIH-NHGRI Nature 438, 803-19 December 8, 2005 Rine J Eukaryota Arthropoda Lepidoptera Insecta Bombycidae Bombyx EUKARYAL Bombyx mori Dazao Sanger 5.9x Genome ARTHROPODA Quality Draft Complete and Published Biotechnological, Protein production None Mesophile China Public Gc00596 Gi01144 002340_GCAT 7091 13125 530000 18510 28 0 AADK00000000 NCBI SWAU, China Science 306, 1937-40 December 10, 2004 Xia Q Eukaryota Arthropoda Diptera Insecta Culicidae Aedes EUKARYAL Aedes aegypti Liverpool Sanger 8x Genome ARTHROPODA Quality Draft Complete and Published Animal Pathogen, Human Pathogen, Medical Yellow fever Mesophile USA 38.3 Public Gc00595 Gi00015 002329_GCAT 7159 12434 1380000 3 0 AAGE00000000 NCBI, AaeDB, VectorBase, J. Craig Venter Institute, Broad Institute Colorado State Univ, J. Craig Venter Institute, Broad Institute NIH-NIAID Science 316, 1718-23 June 22, 2007 Severson DW Eukaryota Arthropoda Hymenoptera Insecta Apidae Apis EUKARYAL Apis mellifera DH4 Sanger 7-8x Genome ARTHROPODA Quality Draft Complete and Published Agricultural, Medical None Mesophile USA Public Gc00594 Gi00031 002334_GCAT 7460 10625 200000 6704 16 0 NC_007070-85 NCBI, NHGRI, BCM-HGSC BCM-HGSC USDA, NIH-NHGRI Nature 443, 931-949 November 1, 2006 Weinstock G Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Newman Sanger Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Endocarditis, Pneumonia, Skin infection Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Japan 32 Public Gc00593 002835_GCAT 426430 18801 640753054 2878 2707 1 0 NC_009641 NCBI Juntendo Univ J Bacteriology 190, 300-10 July 3, 2007 Baba, T Eukaryota Chlorophyta Mamiellales Prasinophyceae Ostreococcus Ostreococcus 'lucimarinus' EUKARYAL Ostreococcus lucimarinus CCE9901 - RCC141 Sanger CCMP2514 Genome PLANTS-CHLOROPHYTA Quality Draft Complete and Published Deep sea, Marine Mesophile La Jolla, California USA 60.4 Public Gc00592 Gi01106 002275_GCAT 436017 13044 640281011 13204 7640 21 0 NC_009355-73 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute, UCSD DOE PNAS 104, 7705-7710 May 3, 2007 Palenik B Archaea Euryarchaeota Methanococcales Methanococci Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C7 Sanger 10.7x Genome EURYARCHAEOTA-METHANOCOCCI Complete Complete and Published Biotechnological, Energy production None Marine, Sediment 6.5 - 8 Obligate anaerobe Coccus-shaped Singles Motile Nonsporulating Lithotroph Mesophile 20 - 45 Intertidal sediments USA 33.7 Public Gc00591 Gi01308 39 001821_GCAT 426368 18819 640753035 1772 1900 1 0 NC_009637 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 29, 2007 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Sinorhizobium Sinorhizobium medicae BACTERIAL Sinorhizobium medicae WSM419 Sanger 12x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile 28 USA 62 Public Gc00590 Gi01041 001593_GCAT 366394 16304 640753051 3781 6644 1 3 NC_009636 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 29, 2007 Bruce D Archaea Euryarchaeota Methanococcales Methanococci Methanococcaceae Methanococcus Methanococcus aeolicus ARCHAEAL Methanococcus aeolicus Nankai-3 454, Sanger 12.7x Genome EURYARCHAEOTA-METHANOCOCCI Complete Complete and Published Biotechnological, Carbon cycle, Energy production None Marine Anaerobe Coccus-shaped Motile Nonsporulating Lithotroph Mesophile 42 Deep marine sediment from the Nankai Trough off the coast of Japan USA 30 Public Gc00589 Gi01899 001824_GCAT 419665 18641 640753034 1569 1595 1 0 NC_009635 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 29, 2007 Bruce D Archaea Euryarchaeota Methanococcales Methanococci Methanococcaceae Methanococcus Methanococcus vannielii ARCHAEAL Methanococcus vannielii SB Sanger Genome EURYARCHAEOTA-METHANOCOCCI Complete Complete and Published Biotechnological, Carbon cycle, Energy production None Marine, Mud Anaerobe Coccus-shaped Singles Motile Nonsporulating Lithotroph Mesophile 20 - 40 San Francisco Bay mud flat USA 31 Public Gc00588 Gi01309 213180 001822_GCAT 406327 17889 640753036 1720 1797 1 0 NC_009634 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 29, 2007 Bruce D Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Alkaliphilus Alkaliphilus metalliredigens BACTERIAL Alkaliphilus metalliredigenes QYMF Sanger Genome FIRMICUTES Complete Complete and Published Bioremediation, Environmental None Ponds Anaerobe Rod-shaped Motile Sporulating Mesophile Halophile Borax leachate ponds USA 36.6 Public Gc00587 Gi00023 58790 000694_GCAT 293826 13006 640753002 4400 5077 1 0 NC_009633 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 28, 2007 Bruce D Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus JH1 VISA Sanger 11x Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Staphylococcal scarlet fever, Toxic-shock syndrome Host Facultative Coccus-shaped Nonmotile Nonsporulating Mesophile 30 - 37 USA 32.9 Public Gc00586 Gi00765 247822 001516_GCAT 359787 15758 640753052 2906 2980 1 1 NC_009632 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Rockefeller Univ DOE PNAS 104, 9451-6 June 28, 2007 Bruce D Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium beijerinckii BACTERIAL Clostridium beijerinckii NCIMB 8052 Sanger NCIMB 8052 Genome FIRMICUTES Complete Complete and Published Biotechnological, Energy production, Solvent production None Fresh water, Soil Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile USA 29.9 Public Gc00585 Gi00156 356694 000966_GCAT 290402 12637 640753016 6000 5364 1 0 NC_009617 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Illinois DOE Unpublished June 27, 2007 Bruce D Bacteria Bacteroidetes Bacteroidales Bacteroidia Bacteroidaceae Bacteroides Bacteroides vulgatus BACTERIAL Bacteroides vulgatus ATCC 8482 Sanger ATCC 8482 Genome BACTEROIDETES Complete Complete and Published Animal Pathogen, Human Gut Microbiome Initiative (HGMI), Human Pathogen, Medical Opportunistic peritoneal disease Host, Intestinal microflora Anaerobe Rod-shaped Mesophile USA 42.2 Public Gc00584 Gi00072 356684 000771_GCAT 435590 13378 640753008 5163 4189 1 0 NC_009614 NCBI, Washington Univ Washington Univ NSF PLoS Biology 5, E156 June 27, 2007 Gordon J Bacteria Bacteroidetes Bacteroidales Bacteroidia Porphyromonadaceae Parabacteroides Parabacteroides distasonis BACTERIAL Parabacteroides distasonis ATCC 8503 454, Sanger ATCC 8503 Genome BACTEROIDETES Complete Complete and Published Animal Pathogen, Human Gut Microbiome Initiative (HGMI), Human Pathogen, Medical Opportunistic peritoneal disease Host, Intestinal microflora Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile USA 45.1 Public Gc00583 Gi00067 252514 000765_GCAT 435591 13485 640753039 4811 3965 1 0 NC_009615 NCBI, Washington Univ Washington Univ NSF PLoS Biology 5, E156 June 27, 2007 Gordon J Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Thermosipho Thermosipho melanesiensis BACTERIAL Thermosipho melanesiensis BI429 454, Sanger 10x Genome THERMOTOGAE Complete Complete and Published Biotechnological, Evolutionary None Hydrothermal vent, Marine 6.5 Anaerobe Rod-shaped Thermophile 70 "Gills of the deep-sea vent hydrothermal mussel Bathymodiolus brevior from the Lau Basin at Southwestern Pacific Ocean, between 1832 and 1887 metres (latitude, 22o329S; longitude, 176o439W)" USA 30 Public Gc00582 Gi01045 192511 001610_GCAT 391009 17249 640753057 1915 2002 1 0 NC_009616 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 26, 2007 Bruce D Bacteria Bacteroidetes Flavobacteriales Flavobacteria Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum BACTERIAL Flavobacterium psychrophilum JIP02/86 Sanger ATCC 49511 Genome BACTEROIDETES Complete Complete and Published Fish Pathogen, Medical Bacterial cold water, Rainbow trout fry syndrome Fresh water, Host Aerobe Rod-shaped Motile Nonsporulating Psychrophile France 32.5 Public Gc00581 002803_GCAT 402612 19979 640753027 2861 2505 1 0 NC_009613 NCBI INRA Nature Biotechnol 25, 763-9 June 25, 2007 Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittGG Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Chronic bronchitis, Meningitis, Otitis media, Septicemia, Sinusitis Host Facultative Rod-shaped Nonmotile Mesophile External ear discharge of a spontaneously perforated tympanic membrane of a child in Pittsburgh USA 37.9 Public Gc00580 Gi01494 001117_GCAT 374931 16401 640427117 1887 1793 1 0 NC_009567 NCBI Allegheny-Singer Research Institute Unpublished June 7, 2007 Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi PittEE Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Chronic bronchitis, Meningitis, Otitis media, Septicemia, Sinusitis Host Facultative Rod-shaped Nonmotile Mesophile Middle-ear effusion of a child in Pittsburgh USA 37.9 Public Gc00579 Gi01493 001116_GCAT 374930 16400 640427116 1813 1750 1 0 NC_009566 NCBI Allegheny-Singer Research Institute Unpublished June 7, 2007 Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis F11 (ExPEC) Sanger 22.27x Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 Tuberculosis patients during a TB epidemic in the Western Cape of South Africa USA 65.6 Public Gc00578 Gi01175 234320 001227_GCAT 336982 15642 640427123 4424 4050 1 0 NC_009565, CM000286 NCBI, Integr8, Broad Institute Broad Institute NIH-NIAID Unpublished June 7, 2007 MSC Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Ra 103703 ATCC 25177 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 Original human-lung H37 isolate in 1934 China 65.6 Public Gc00577 Gi01895 231446 001235_GCAT 419947 18883 640427124 4419 4132 1 0 NC_009525 NCBI Beijing Genomics Institute PLoS ONE 3, e2375 June 1, 2007 Zhang Y Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Psychrobacter Psychrobacter sp. PRwf-1 BACTERIAL Psychrobacter sp. PRwf-1 Sanger 15x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Astrobiological, Biotechnological None Marine, Permafrost sediment, Soil Aerobe Rod-shaped Nonmotile Psychrophile USA 44 Public Gc00576 Gi01521 229175 001394_GCAT 349106 15759 640427134 2978 2549 1 2 NC_009524 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 4, 2007 Bruce D Bacteria Chloroflexi Chloroflexales Chloroflexi (class) Chloroflexaceae Roseiflexus Roseiflexus sp. RS-1 BACTERIAL Roseiflexus sp RS-1 Sanger 11x Genome CHLOROFLEXI Complete Complete and Published Biotechnological None Hot spring, Marine Facultative Rod-shaped Motile Nonsporulating Photoautotroph, Photosynthetic Thermophile Hot spring microbial mat USA 60.4 Public Gc00575 Gi00963 161690 001430_GCAT 357808 16190 640427139 5801 4728 1 0 NC_009523 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 4, 2007 Bruce D Archaea Euryarchaeota Methanobacteriales Methanobacteria Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii ARCHAEAL Methanobrevibacter smithii PS Sanger 11.6x 157022 ATCC 35061, DSM 861 Genome EURYARCHAEOTA-METHANOBACTERIA Complete Complete and Published Human Gut Microbiome Initiative (HGMI), Medical None Host, Human intestinal microflora, Soil Anaerobe Rod-shaped Chains, Pairs Nonmotile Lithotroph Mesophile 37 - 40 Sewage digester in Gainesville Florida USA 31 Public Gc00574 Gi01898 98872 001792_GCAT 420247 18653 640427121 1853 1880 1 0 NC_009515 NCBI Washington Univ PNAS 104, 10643-8 June 4, 2007 Gordon J Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri F275, JCM 1112 454, Sanger 38415 DSM 20016, JCM 1112 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Birds intestinal microflora, Host, Human intestinal microflora, Mammalian intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile Human feces USA 38.9 Public Gc00573 Gi00790 262739 001153_GCAT 299033 15766 640427118 1999 2027 1 0 NC_009513 NCBI DOE Joint Genome Institute, Univ of Otago DOE Unpublished May 31, 2007 Tannock G Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida F1 Sanger 11x 268202 ATCC 700007 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental None Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Polluted creek in Urbana IL USA 61.9 Public Gc00572 Gi00953 001392_GCAT 351746 13909 640427132 5959 5494 1 0 NC_009512 NCBI, Pseudomonas Genome DBase DOE Joint Genome Institute DOE Unpublished May 31, 2007 Bruce D Bacteria Proteobacteria Sphingomonadales Alphaproteobacteria Sphingomonadaceae Sphingomonas Sphingomonas wittichii BACTERIAL Sphingomonas wittichii RW1 Sanger 11x 144023 DSM 6014, JCM 10273, EY 4224 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Dioxin-mineralizing, Environmental None Fresh water Aerobe Rod-shaped Motile Nonsporulating Heterotroph Mesophile Elbe River in Germany USA 67 Public Gc00571 Gi01358 230649 001775_GCAT 392499 17343 640427144 5382 5509 1 2 NC_009511 NCBI, DOE Joint Genome Institute, Johns Hopkins Univ DOE Joint Genome Institute DOE Unpublished May 31, 2007 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella ovis BACTERIAL Brucella melitensis bv ovis ATCC25840 104622 ATCC 25840 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Biothreat, Medical, Sheep Pathogen Brucellosis, Genital infection Host, Macrophage Facultative Rod-shaped Nonmotile Nonsporulating Mesophile 37 tissue, animal(sheep) USA 57.2 Public Gc00570 Gi00101 229012 000792_GCAT 444178 12514 640427105 3275 3238 2 0 NC_009504, NC_009505 NCBI J. Craig Venter Institute Unpublished May 31, 2007 Paulsen I Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma agalactiae BACTERIAL Mycoplasma agalactiae PG2 369021 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Medical Arthritis, Mastitis, Mycoplasmosis, Pneumonia Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile France 29.7 Public Gc00569 Gi01077 70874 001237_GCAT 347257 16095 640427125 877 831 1 0 NC_009497 NCBI, Genoscope Genoscope Unpublished May 23, 2007 Barbe V Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium botulinum BACTERIAL Clostridium botulinum type A - Hall 719454 ATCC 3502 Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Botulism Soil Obligate anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 35 - 40 United Kingdom 28 Public Gc00568 Gi00157 000968_GCAT 413999 193 640427109 3886 3802 1 1 NC_009495 NCBI, Sanger Institute, ClostriDB Sanger Institute, Institute of Food Research, Univ of Reading Beowulf Genomics Genome Res 17, 1082-92 May 23, 2007 Parkhill J Bacteria Proteobacteria Legionellales Gammaproteobacteria Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Corby Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Legionnaire's disease Biofilm, Fresh water, Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Chemoorganotroph Mesophile Human isolate Germany 38.5 Public Gc00567 Gi00827 227923 001161_GCAT 400673 17491 640427119 3576 3312 1 0 NC_009494 NCBI IMB, Jena Unpublished May 24, 2007 Gloeckner G Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Prochlorococcus sp. WH 7803 527166 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Motile Photoautotroph, Photosynthetic Mesophile Sargasso Sea European Consortium 60.2 Public Gc00566 Gi00250 231101 001586_GCAT 32051 13642 640427149 2366 2592 1 0 NC_009481 NCBI, Genoscope International Collaboration, Genoscope European Union Unpublished May 19, 2007 Wincker P Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp. RCC307 RCC307 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Facultative Coccus-shaped Motile Photoautotroph, Photosynthetic Mesophile Seawater taken at a depth of 15 meters from the Mediterranean Sea European Consortium 60.2 Public Gc00565 Gi00783 231184 001585_GCAT 316278 13654 640427148 2224 2586 1 0 NC_009482 NCBI, Genoscope International Collaboration, Genoscope European Union Unpublished May 19, 2007 Wincker P Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus JH9 VISA Sanger 11x Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Staphylococcal scarlet fever, Toxic-shock syndrome Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Patient undergoing vancomycin treatment USA 32.9 Public Gc00564 Gi01035 234645 001517_GCAT 359786 15757 640427145 2906 2918 1 1 NC_009487 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Rockefeller Univ DOE PNAS 104, 9451-9456 May 18, 2007 Tomasz A Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Microbacteriaceae Clavibacter Clavibacter michiganensis BACTERIAL Clavibacter michiganensis michiganensis NCPPB 382 Sanger 7256 NCPPB382 Genome ACTINOBACTERIA Complete Complete and Published Agricultural, Plant Pathogen Ring rot, Tuber rot, Wilting disease Host Aerobe Rod-shaped Pairs, Singles Nonmotile Nonsporulating Mesophile Germany 72.7 Public Gc00563 Gi00154 000964_GCAT 443906 19643 640427108 3297 3169 1 2 NC_009480 NCBI, Bielefeld Univ Bielefeld Univ BMBF J Bacteriology 190, 2138-49 May 18, 2007 Puhler A Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Thermotoga Thermotoga petrophila BACTERIAL Thermotoga petrophila RKU-1 Sanger 11x 163898 Genome THERMOTOGAE Complete Complete and Published Biotechnological, Evolutionary None Fresh water, Oil fields Anaerobe Rod-shaped Motile Nonsporulating Heterotroph Hyperthermophile 80 Production waters of the Kubiki oil reservoir in Niigata Japan USA 46 Public Gc00562 Gi01043 001608_GCAT 390874 17089 640427150 1823 1911 1 0 NC_009486 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished May 18, 2007 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. BTAi1 BACTERIAL Bradyrhizobium sp BTAi1 Sanger 10x Aeschynomene indica Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural None Soil Aerobe Rod-shaped Motile Photosynthetic Mesophile Stem nodules of Aeschynomene indica USA 64 Public Gc00561 Gi00922 234467 000788_GCAT 288000 16137 640427103 8264 7819 1 1 NC_009485 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Science 316, 1307-12 May 11, 2007 Bruce D Bacteria Proteobacteria Desulfuromonadales Deltaproteobacteria Geobacteraceae Geobacter Geobacter uraniireducens BACTERIAL Geobacter uraniumreducens RF4 Sanger 13x Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Environmental None Sediment, Soil Anaerobe Rod-shaped Singles Motile Nonsporulating Chemolithotroph Mesophile Uranium bioremediation study site in Rifle Colorado USA 54 Public Gc00560 Gi01251 001106_GCAT 351605 15768 640427115 5136 4543 1 0 NC_009483 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished May 11, 2007 Bruce D Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Acetobacteraceae Acidiphilium Acidiphilium cryptum BACTERIAL Acidiphilium cryptum JF-5 Sanger 9x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Acid mine drainage, Fresh water, Hydrothermal vent Aerobe Rod-shaped Motile Heterotroph Mesophile 35 Coal mine lake sediment USA 67 Public Gc00559 Gi00918 233394 000611_GCAT 349163 15753 640427101 3389 3746 1 8 NC_009484 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished May 11, 2007 Bruce D Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides Dehalococcoides sp. BAV1 BACTERIAL Dehalococcoides sp BAV1 Sanger 13x Genome CHLOROFLEXI Complete Complete and Published Bioremediation, Biotechnological, Ecological, Environmental None Fresh water, Groundwater Anaerobe Motile Nonsporulating Chemolithotroph Mesophile environment in Michigan that could dechlorinate polychlorinated ethenes USA 47 Public Gc00558 Gi00937 76593 000991_GCAT 216389 15770 640427111 1341 1483 1 0 NC_009455 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished May 7, 2007 Bruce D Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae O395 O1 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Cholera, Food poisoning Fresh water Facultative Curved-shaped Singles Motile Nonsporulating Mesophile 20 - 30 6th pandemic strain USA 47 Public Gc00557 Gi01151 223193 001685_GCAT 345073 15667 640427151 4148 4118 2 0 NC_009456, NC_009457 NCBI, J. Craig Venter Institute J. Craig Venter Institute Unpublished May 8, 2007 Bacteria Firmicutes Clostridiales Clostridia Peptococcaceae Pelotomaculum Pelotomaculum thermopropionicum BACTERIAL Pelotomaculum thermopropionicum SI 303408 DSM 13744 Genome FIRMICUTES Complete Complete and Published Biotechnological None Sludge 7 Anaerobe Sporulating Thermophile 55 Thermophilic upflow anaerobic sludge blanket reactor Japan 52.8 Public Gc00556 Gi01927 335682 002551_GCAT 370438 19023 640427128 3025 2983 1 0 NC_009454 NCBI Marine Biotechnology Institute Unpublished May 8, 2007 Watanabe K Bacteria Proteobacteria Gammaproteobacteria Calyptogena okutanii thioautotrophic gill symbiont BACTERIAL Candidatus Vesicomyosocius okutanii HA Calyptogena okutanii Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Evolutionary None Host Chemoautotroph Mesophile Hatsushima island in Sagami Bay in Japan Japan 31.6 Public Gc00555 002614_GCAT 412965 18267 640427107 1022 1016 1 0 NC_009465 NCBI JAMSTEC Current Biology 17, 881-886 May 22, 2007 Maruyama T Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Orientia Orientia tsutsugamushi BACTERIAL Orientia tsutsugamushi Boryong Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Medical Scrub typhus Host Aerobe Rod-shaped Motile Mesophile Korean patient in Boryong in 1995 Korea 30.5 Public Gc00554 002613_GCAT 357244 16180 640427127 2127 2215 1 0 NC_009488 NCBI Seoul National Univ MOHW PNAS 104, 7981-6 May 8, 2007 Kim I-S Bacteria Proteobacteria Cardiobacteriales Gammaproteobacteria Cardiobacteriaceae Dichelobacter Dichelobacter nodosus BACTERIAL Dichelobacter nodosus VCS1703A Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Medical Ovine footrot Host Anaerobe Rod-shaped Mesophile 37 USA 44.4 Public Gc00553 Gi00198 225045 001003_GCAT 246195 50 640427112 1389 1395 1 0 NC_009446 NCBI J. Craig Venter Institute, Univ or Arizona USDA Nat. Biotechnol 25, 569-75 May 4, 2007 Paulsen I Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. ORS278 BACTERIAL Bradyrhizobium sp ORS278 299985 Aeschynomene Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural None Host, Soil Aerobe Rod-shaped Motile Photosynthetic Mesophile Stem nodule of Aeschynomene sensitiva in Senegal in 1991 France 65.5 Public Gc00552 Gi00923 219364 000789_GCAT 114615 19575 640427104 7456 6824 1 0 NC_009445 NCBI, Genoscope Genoscope Science 316, 1307-12 May 1, 2007 Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides ATCC 17025 Sanger 10x 99107 ATCC 17025 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological, Energy production, Environmental None Facultative Rod-shaped Chains Motile Photosynthetic Mesophile 25 - 35 USA 68.5 Public Gc00551 Gi01029 222847 001412_GCAT 349102 15755 640427138 3217 4531 1 5 NC_009428 NCBI DOE Joint Genome Institute DOE Unpublished May 8, 2007 Bruce D Bacteria Bacteroidetes Flavobacteriales Flavobacteria Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae BACTERIAL Flavobacterium johnsoniae UW101 Sanger 11x 8766 ATCC 17061 Genome BACTEROIDETES Complete Complete and Published Biomass conversion, Biotechnological, Fish Pathogen, Medical Skin lesions Fresh water, Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile 20 - 30 Soil in England USA 34 Public Gc00550 Gi00942 226144 001056_GCAT 376686 16082 640427114 6096 5202 1 0 NC_009441 NCBI DOE Joint Genome Institute DOE Unpublished May 1, 2007 Bruce D Eukaryota Kinetoplastida Trypanosomatidae Leishmania Leishmania infantum EUKARYAL Leishmania infantum JPCM5 (MCAN/ES/98/LLM-877) Sanger 5x Genome PROTISTS-EUGLENOZOA Complete Complete and Published Human Pathogen, Medical Leishmaniasis Host Mesophile United Kingdom Public Gc00549 Gi00324 001881_GCAT 435258 12658 31760 7993 36 0 NC_009386-420 NCBI, Sanger Institute Sanger Institute, Imperial College, Glasgow Univ Wellcome Trust Unpublished April 30, 2007 Peacock C Archaea Crenarchaeota Sulfolobales Thermoprotei Sulfolobaceae Metallosphaera Metallosphaera sedula ARCHAEAL Metallosphaera sedula DSM 5348 115548 DSM 5348, ATCC 51363 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Bioremediation, Biotechnological None 2 Aerobe Coccus-shaped Nonmotile Nonsporulating Thermophile 70 Thermal pond in the Pisciarelli Solfatara in Italy USA 46.3 Public Gc00548 Gi01305 226044 001818_GCAT 399549 17447 640427120 2191 2388 1 0 NC_009440 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Appl Environ Microbiol Epub April 25, 2007 Blum P Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 98HAH33 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Swine Pathogen Arthritis, Endocarditis, Meningitis, Septicemia Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 37 Chinese virulent strain isolated from fatal cases of STSS in 1998 China 41.1 Public Gc00547 Gi01544 001568_GCAT 391296 17155 640427147 2095 2325 1 0 NC_009443 NCBI Beijing Institute of Genomics PLoS ONE 2, E315 April 24, 2007 Yu J Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus suis BACTERIAL Streptococcus suis 05ZYH33 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Swine Pathogen Arthritis, Endocarditis, Meningitis, Septicemia Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 37 Chinese virulent strain isolated from fatal cases of STSS in 2005 China 41.1 Public Gc00546 Gi01543 001567_GCAT 391295 17153 640427146 2096 2322 1 0 NC_009442 NCBI Beijing Institute of Genomics PLoS ONE 2, E315 April 24, 2007 Yu J Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella putrefaciens BACTERIAL Shewanella putrefaciens CN-32 454, Sanger 493665 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Fresh water, Soil Anaerobe Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile "Subsurface; shale sandstone; 250 m depth from Albuquerque, New Mexico" USA 44.4 Public Gc00545 Gi00555 001496_GCAT 319224 13393 640427141 3498 4260 1 0 NC_009438 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished April 20, 2007 Bruce D Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas mendocina BACTERIAL Pseudomonas mendocina ymp Sanger 14.4x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Alginate synthesis, Bioremediation, Biotechnological, Environmental, Human Pathogen, Medical Endocarditis, Spondylodiscitis Blood, Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Argentina USA 64.7 Public Gc00544 Gi01348 223278 001765_GCAT 399739 17457 640427131 5072 4782 1 0 NC_009439 NCBI DOE Joint Genome Institute DOE Unpublished April 20, 2007 Bruce D Bacteria Firmicutes Thermoanaerobacterales Clostridia Thermoanaerobacterales Family III. Incertae Sedis Caldicellulosiruptor Caldicellulosiruptor saccharolyticus BACTERIAL Caldicellulosiruptor saccharolyticus DSM 8903 Sanger 10x 99107 DSM 8903, ATCC 43494 Genome FIRMICUTES Complete Complete and Published Bioenergy, Biotechnological, Energy production None Hot spring 7.0 Anaerobe Rod-shaped Pairs, Singles Nonsporulating Thermophile 79 Hot spring in New Zealand USA 35.3 Public Gc00543 Gi00929 144686 000818_GCAT 351627 13466 640427106 2970 2873 1 0 NC_009437 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Appl Environ Microbiology Epub April 19, 2007 Bruce D Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Enterobacter Enterobacter sp. 638 BACTERIAL Enterobacter sp 638 Populus trichocarpa x deltoides Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural None Endophyte, Host Facultative Rod-shaped Motile Mesophile Populus trichocarpa x deltoides USA 52.8 Public Gc00542 Gi01336 174884 001748_GCAT 399742 17461 640427113 4518 4488 1 1 NC_009436 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished April 18, 2007 Bruce D Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas stutzeri BACTERIAL Pseudomonas stutzeri A1501 CGMCC 0351 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Bioremediation, Environmental None Host, Rice roots, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Rice roots that had been inoculated with strain A15 in a rice paddy in China China 63.9 Public Gc00541 Gi01534 8477 001393_GCAT 379731 16817 640427133 4567 4219 1 0 NC_009434 NCBI, Pseudomonas Genome DBase Chinese Academy of Agricultural Sciences PNAS Epub April 23, 2007 Archaea Crenarchaeota Thermoproteales Thermoprotei Thermoproteaceae Pyrobaculum Pyrobaculum arsenaticum ARCHAEAL Pyrobaculum arsenaticum PZ6 Sanger 11x 163713 DSM 13514, ATCC 700994 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Fresh water, Hot spring Anaerobe Rod-shaped Motile Nonsporulating Autotroph, Chemolithotroph, Organotroph Hyperthermophile 95 Hot spring at Pisciarelli Solfatara Naples Italy USA 58.3 Public Gc00540 Gi01056 20435 001812_GCAT 340102 15582 640427135 2121 2455 1 0 NC_009376 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Unpublished April 20, 2007 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Micromonosporaceae Salinispora Salinispora tropica BACTERIAL Salinispora tropica CNB-440 Sanger 13x 621777 DSM 44818, ATCC BAA-916, CIP 108943, JCM 13857 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological, Cancer treatment, Medical None Marine Aerobe Filament-shaped Nonmotile Sporulating Mesophile 28 Coarse beach sand off the Bahamas USA 69 Public Gc00539 Gi01034 172932 001442_GCAT 369723 16342 640427140 5183 4706 1 0 NC_009380 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE PNAS 104, 10376-81 April 17, 2007 Bruce D Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Pestoides F Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bubonic and Pneumonic plague Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile USA 47.6 Public Gc00538 Gi01525 218141 001726_GCAT 386656 16700 640427152 4517 4359 1 2 NC_009381 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished April 13, 2007 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Polynucleobacter Polynucleobacter sp. QLW-P1DMWA-1 BACTERIAL Polynucleobacter sp QLW-P1DMWA-1 Sanger 12x Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Ecological None Fresh water, Host Aerobe Rod-shaped Nonmotile Heterotroph Mesophile USA 46 Public Gc00537 Gi01032 182979 001415_GCAT 312153 16679 640427129 2159 2173 1 0 NC_009379 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished April 12, 2007 Bruce D Bacteria Proteobacteria Aeromonadales Gammaproteobacteria Aeromonadaceae Aeromonas Aeromonas salmonicida BACTERIAL Aeromonas salmonicida salmonicida A449 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Fish Pathogen, Human Pathogen, Medical Furunculosis Fresh water, Fresh water Facultative Rod-shaped Motile Heterotroph Psychrophile brown trout in the Eure river, France by Christian Michel in 1975 Canada 58.5 Public Gc00536 Gi00019 222798 000687_GCAT 382245 16723 641522605 4702 4615 1 5 NC_009348 NCBI, NRC-IMB NRC-IMB NRC BMC Genomics 9:427 April 6, 2007 Reith M Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum R Genome ACTINOBACTERIA Complete Complete and Published Amino acids production, Biotechnological, Food industry, Glutamate production None Normal microflora, Soil Facultative Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 30 - 40 Meadow soil in Japan Japan 54.1 Public Gc00535 137492 002586_GCAT 340322 19193 640427110 3300 3174 1 1 NC_009342 NCBI RITE Microbiology 153, 1042-58 April 5, 2007 Inui M Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium gilvum BACTERIAL Mycobacterium flavenscens PYR-GCK Sanger 12x 581072 ATCC 700033 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile River sediment USA 67 Public Gc00534 Gi01020 224220 001221_GCAT 350054 15760 640427122 5619 5723 1 3 NC_009338 NCBI DOE Joint Genome Institute DOE Unpublished April 12, 2007 Bruce D Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chlorobium Chlorobium phaeovibrioides BACTERIAL Chlorobium phaeovibrioides DSM 265 156547 DSM 265 Genome CHLOROBI Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water Facultative Rod-shaped Chains, Singles Nonmotile Nonsporulating Photosynthetic Mesophile USA 53 Public Gc00533 Gi00148 131048 000953_GCAT 290318 12607 640427130 1966 1870 1 0 NC_009337 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished April 12, 2007 Bruce D Bacteria Firmicutes Bacillales Bacilli Bacillaceae Geobacillus Geobacillus thermodenitrificans BACTERIAL Geobacillus thermodenitrificans NG80-2 Sanger 9.1x Genome FIRMICUTES Complete Complete and Published Biotechnological, Environmental None Fresh water, Oil fields Facultative Rod-shaped Motile Sporulating Chemoorganotroph Thermophile 65 Oil reservoir formation water taken at a depth of 2000 m China 49 Public Gc00532 Gi01891 162671 001105_GCAT 420246 18655 640069312 3607 3705 1 1 NC_009328 NCBI Nankai Univ PNAS 104, 5602-7 March 29, 2007 Wang, L Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia vietnamiensis BACTERIAL Burkholderia vietnamiensis G4 (R1808) 62273 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Animal Pathogen, Human Pathogen, Medical, Plant Pathogen Pneumonia Soil Facultative Rod-shaped Motile Mesophile USA 67 Public Gc00531 Gi00105 207860 000797_GCAT 269482 10696 640069307 7430 7948 3 5 NC_009255, NC_009256, NC_009254 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished March 27, 2007 Bruce D Bacteria Firmicutes Clostridiales Clostridia Peptococcaceae Desulfotomaculum Desulfotomaculum reducens BACTERIAL Desulfotomaculum reducens MI-1 Sanger 11x Genome FIRMICUTES Complete Complete and Published Bioremediation, Environmental None Fresh water Anaerobe Rod-shaped Motile Sporulating Mesophile 37 Heavy metal-contaminated sediment collected at the Mare Island Naval Shipyard on the San Francisco Bay USA 42 Public Gc00530 Gi00939 000999_GCAT 349161 13424 640069310 3608 3452 1 0 NC_009253 NCBI DOE Joint Genome Institute DOE Unpublished March 24, 2007 Rizlan Bernier-Latmani Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis A.II, Wyoming, WY96-3418 Sanger 16x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Medical Plague-like illness Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile Human finger wound in 1996 USA 32.3 Public Gc00529 Gi01517 253022 001061_GCAT 418136 18459 640069311 1898 1734 1 0 NC_009257 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute PLoS ONE 2, e947 March 24, 2007 Brettin TS Archaea Euryarchaeota ARCHAEAL Methanocella sp. RC-I Metagenome EURYARCHAEOTA Complete Complete and Published Biotechnological None Soil Lithotroph Mesophile Italian Rice field USA 54.6 Public Gc00528 173491 002574_GCAT 351160 19641 640427153 3179 3085 1 NC_009464 NCBI, Integr8 Max Planck Institute Science 313, 370-2 March 2, 2007 Liesack W Archaea Euryarchaeota Methanococcales Methanococci Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis C5 Sanger 14x Genome EURYARCHAEOTA-METHANOCOCCI Complete Complete and Published Biotechnological, Energy production None Fresh water 6.5 - 8 Obligate anaerobe Coccus-shaped Singles Motile Nonsporulating Lithotroph Mesophile 20 - 45 USA 33 Public Gc00527 Gi01306 203530 001819_GCAT 402880 17641 640069316 1780 1935 1 1 NC_009135 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Unpublished March 15, 2007 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Oxalobacteraceae Herminiimonas BACTERIAL Herminiimonas arsenicoxydans ULPAs1 689940 DSM 17148, CCM 7303, LMG 22961 Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Detoxification, Environmental None Fresh water Anaerobe Rod-shaped Motile Heterotroph Mesophile France 54.3 Public Gc00526 Gi00789 109381 000934_GCAT 204773 13467 640069313 3424 3425 1 0 NC_009138 NCBI, Genoscope Genoscope PLoS Genet 13, e53 March 13, 2007 Barbe V Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Pseudonocardiaceae Saccharopolyspora Saccharopolyspora erythraea BACTERIAL Saccharopolyspora erythraea NRRL2338 white 95816 NRRL2338, DSM 40517, ATCC 11635 Genome ACTINOBACTERIA Complete Complete and Published Antibiotic production, Biotechnological, Erythromycin production None Aerobe Filament-shaped Nonmotile Sporulating Mesophile 25 - 32 Soil; Philippines United Kingdom 71.1 Public Gc00525 002573_GCAT 405948 18489 640069329 8212 7267 1 0 NC_009142 NCBI, Univ of Cambridge Univ of Cambridge Nature Biotechnology 25, 447-453 March 21, 2007 Leadlay P Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella loihica BACTERIAL Shewanella loihica PV-4 690434 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental None Hydrothermal vent, Marine Anaerobe Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Psychrophile "Iron-rich mat; hydrothermal vent; 1,325 m depth from Naha Vents Hawaii" USA 53.8 Public Gc00524 Gi00556 212576 001497_GCAT 323850 13906 640069331 4602 4114 1 0 NC_009092 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished March 7, 2007 Bruce D Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9301 Genome CYANOBACTERIA Complete Complete and Published Carbon cycle, Environmental, Marine Microbial Initiative (MMI) None Marine Oval-shaped Singles Nonmotile Photosynthetic Mesophile Sargasso Sea at a depth of 90m on July 1993 USA 31.3 Public Gc00523 Gi01229 001370_GCAT 167546 15746 640069322 1641 2003 1 0 NC_009091 NCBI, JCVI MIT, J. Craig Venter Institute Moore Foundation PLoS Genetics 3, e231 March 5, 2007 Chisholm S Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii ATCC 17978 51504 ATCC 17978 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Meningitis, Pneumonia, Septicemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoheterotroph, Heterotroph Mesophile Patient with meningitis USA 38.9 Public Gc00522 Gi01667 209680 000639_GCAT 400667 17477 640069301 3976 3539 1 2 NC_009085 NCBI Yale Univ Genes Dev 21, 601-14 March 1, 2007 Snyder M Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Pichia Pichia stipitis EUKARYAL Pichia stipitis CBS 6054 Sanger 362616 CBS 6054, ATCC 58785, CCRC 21777, IFO 10063. NRRL Y-11545 Genome FUNGI-ASCOMYCOTA Complete Complete and Published Biotechnological, Energy production, Ethanol production, Fermentation None Mesophile USA 41.1 Public Gc00521 Gi00458 002068_GCAT 322104 16843 640281010 15441 5816 8 0 NC_009042-8, NC_009068 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Nature Biotechnology 25, 319-26 February 27, 2007 Jeffries TW Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1106a Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bacteremia, Melioidosis, Pneumonia Soil Aerobe Rod-shaped Motile Mesophile USA 67 Public Gc00520 Gi01877 212193 000810_GCAT 357348 16182 640069305 7100 7334 2 0 NC_009076, NC_009078 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished February 28, 2007 DeShazer D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 668 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bacteremia, Melioidosis, Pneumonia Soil Aerobe Rod-shaped Motile Mesophile USA 68.3 Public Gc00519 Gi01006 206204 000809_GCAT 320373 13953 640069306 7000 7378 2 0 NC_009075, NC_009074 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished February 28, 2007 DeShazer D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei NCTC 10247 341638 NCTC 10247 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Glanders, Pneumonia Host Aerobe Rod-shaped Motile Mesophile USA 68.5 Public Gc00518 Gi00928 214832 000805_GCAT 320389 13946 640069304 5900 5973 2 0 NC_009080, NC_009079 NCBI J. Craig Venter Institute NIH-NIAID Unpublished February 27, 2007 DeShazer D Archaea Crenarchaeota Thermoproteales Thermoprotei Thermoproteaceae Pyrobaculum Pyrobaculum calidifontis ARCHAEAL Pyrobaculum calidifontis JCM 11548 Sanger 12x 556407 JCM 11548 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Fresh water, Hot spring Facultative Rod-shaped Motile Nonsporulating Heterotroph Hyperthermophile 90 - 95 Terrestrial hot spring in the Philippines USA 57.2 Public Gc00517 Gi01055 210224 001811_GCAT 410359 18111 640069326 2009 2237 1 0 NC_009073 NCBI, Integr8 DOE Joint Genome Institute DOE Unpublished February 27, 2007 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium sp. JLS BACTERIAL Mycobacterium sp JLS Sanger 13x Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Creosote-contaminated soil, Soil Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA 68 Public Gc00516 Gi01021 001222_GCAT 164757 16079 640069320 6048 5899 1 0 NC_009077 NCBI DOE Joint Genome Institute DOE Unpublished February 27, 2007 Bruce D Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides ATCC 17029 Sanger 14x 99113 ATCC 17029 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological, Energy production, Environmental None Facultative Rod-shaped Chains Motile Photosynthetic Mesophile 25 - 35 USA 69 Public Gc00515 Gi01030 208808 001413_GCAT 349101 15754 640069328 4420 4320 2 1 NC_009049, NC_009050 NCBI DOE Joint Genome Institute DOE Unpublished February 23, 2007 Bruce D Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae L20 5b 7.6x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Medical, Swine Pathogen Porcine pleuropneumonia Host, Respiratory tract Facultative Rod-shaped Chains, Pairs, Singles Nonmotile Mesophile Canada 41.3 Public Gc00514 Gi01704 213398 000645_GCAT 416269 18221 640069302 2274 2187 1 0 NC_009053 NCBI Institute for Biological Sciences NRC J Bacteriol. 190, 1495-6 February 23, 2007 Nash JHE Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS155 Sanger 9x 654238 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Facultative Rod-shaped Singles, Pairs Motile Nonsporulating Heterotroph Mesophile 4 "Sea-water; oxic zone; 2 ml per litre of oxygen, 90m depth from Baltic Sea" USA 46 Public Gc00513 Gi00551 205509 001488_GCAT 325240 13386 640069330 5127 4752 1 4 NC_009052 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished February 20, 2007 Bruce D Archaea Euryarchaeota Methanomicrobiales Methanomicrobia Methanomicrobiaceae Methanoculleus Methanoculleus marisnigri ARCHAEAL Methanoculleus marisnigri JR1 Sanger 12X 267484 ATCC 35101 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Energy production, Wastewater treatment None Marine Anaerobe Coccus-shaped Motile Nonsporulating Lithotroph Mesophile 21 - 25 Sediment from the Black Sea USA 61.2 Public Gc00512 Gi01052 216145 001795_GCAT 368407 16330 640069318 2478 2610 1 0 NC_009051 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Unpublished February 16, 2007 Anderson I Archaea Crenarchaeota Desulfurococcales Thermoprotei Desulfurococcaceae Staphylothermus Staphylothermus marinus ARCHAEAL Staphylothermus marinus F1, DSM 3639 Sanger 13.3x 290548 DSM 3639, ATCC 43588 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Marine Anaerobe Coccus-shaped Nonmotile Nonsporulating Heterotroph Hyperthermophile 92 Hydrothermal marine sediment from Vulcano Island in Italy USA 35 Public Gc00511 Gi01036 001525_GCAT 399550 17449 640069332 1570 1661 1 0 NC_009033 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE BMC Genomics 10, 145 February 21, 2007 Anderson I Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium thermocellum BACTERIAL Clostridium thermocellum ATCC 27405 40680 ATCC 27405 Genome FIRMICUTES Complete Complete and Published Biotechnological, Energy production None Fresh water, Host, Intestinal microflora, Soil Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Thermophile USA 39 Public Gc00510 Gi00164 138311 000973_GCAT 203119 314 640069309 3800 3375 1 0 NC_009012 NCBI, DOE Joint Genome Institute, ClostriDB DOE Joint Genome Institute, Univ of Rochester DOE Unpublished February 14, 2007 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus sanguinis BACTERIAL Streptococcus sanguinis SK36 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Endocarditis Host, Oral microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile USA 43.4 Public Gc00509 Gi00616 205757 000100_GCAT 388919 13942 640069334 2388 2366 1 0 NC_009009 NCBI, Virginia Commonwealth Univ Virginia Commonwealth Univ, Commonwealth Biotechnologies, Inc NIH-NIDCR J Bacteriol 189, 3166-3175 February 9, 2007 Macrina FL Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis cremoris MG1363 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Facultative Coccus-shaped Nonmotile Nonsporulating Mesophile 40 Netherlands 35.7 Public Gc00508 Gi00318 000101_GCAT 416870 18797 640069315 2529 2596 1 0 NC_009004 NCBI National Univ of Ireland, Institute of Food Research, Bielefeld Univ, Alimentary Pharmabiotic Centre, Univ of Groningen J Bacteriology 189, 3256-3270 January 31, 2007 Kok J Eukaryota Basidiomycota Ustilaginales Ustilaginomycetes Ustilaginaceae Ustilago Ustilago maydis EUKARYAL Ustilago maydis 521 Sanger 10x 470636 Genome FUNGI-BASIDIOMYCOTA Quality Draft Complete and Published Agricultural, Fungal Genome Initiative (FGI), Plant Pathogen Corn smut Mesophile USA Public Gc00507 Gi00675 000102_GCAT 237631 1446 640281003 20500 6631 23 0 AACP01000000 NCBI, Broad Institute BAYER, LION Bioscience AG, Broad Institute NIH-NHGRI Nature 444, 97-101 February 1, 2007 Kahmann R Archaea Euryarchaeota Methanomicrobiales Methanomicrobia Methanocorpusculaceae Methanocorpusculum Methanocorpusculum labreanum ARCHAEAL Methanocorpusculum labreanum Z Sanger 12X 268426 ATCC 43576, DSM 4855 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Energy production None Fresh water Anaerobe Coccus-shaped Nonmotile Nonsporulating Lithotroph Mesophile 37 Surface sediment from the LaBrea Tar Pits in Los Angeles USA 50 Public Gc00506 Gi01051 212361 000103_GCAT 410358 18109 640069317 1804 1889 1 0 NC_008942 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Unpublished February 1, 2007 Anderson I Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei NCTC 10229 341634 NCTC 10229 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Glanders, Pneumonia Host Aerobe Rod-shaped Motile Mesophile USA 68.2 Public Gc00505 Gi00926 202617 000104_GCAT 412022 13943 640069303 5800 5630 2 1 NC_008836, NC_008835 NCBI2, J. Craig Venter Institute, NCBI1 J. Craig Venter Institute NIH-NIAID Unpublished January 30, 2007 Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Alteromonadaceae Marinobacter Marinobacter hydrocarbonoclasticus BACTERIAL Marinobacter hydrocarbonoclasticus VT8 Sanger 9x 118038 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Biotechnological, Detoxification, Environmental None Marine Facultative Rod-shaped Motile Nonsporulating Heterotroph Mesophile 30 Halophile Mediterranean seawater near a petroleum refinery USA 57.3 Public Gc00504 Gi00763 8807 000105_GCAT 351348 13239 639633037 4326 4395 1 2 NC_008740 NCBI DOE Joint Genome Institute, Woods Hole Oceanographic Institute DOE Unpublished December 28, 2006 Edwards K Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bartonellaceae Bartonella Bartonella bacilliformis BACTERIAL Bartonella bacilliformis KC583 111064 ATCC 35685 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Carrion's disease, Oroya fever Blood, Host Aerobe Rod-shaped Motile Mesophile 28 USA 38.2 Public Gc00503 Gi01260 189350 000106_GCAT 360095 16249 639633009 1445 1423 1 0 NC_008783 NCBI J. Craig Venter Institute NIH-NIAID Unpublished January 4, 2007 Eukaryota Ascomycota Eurotiales Eurotiomycetes Trichocomaceae Aspergillus Aspergillus niger EUKARYAL Aspergillus niger CBS 513.88 Sanger 7.5x Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Biotechnological, Citric acid production, Fermentation None Filament-shaped Mesophile Netherlands 50.37 Public Gc00502 Gi00041 000107_GCAT 425011 19275 640281012 33975 14086 8 0 NT_166518-38 NCBI, Integr8 DSM, Gene Alliance Nature Biotechnology 25, 221 - 231 January 28, 2007 Stam H Bacteria Proteobacteria Burkholderiales Betaproteobacteria Methylibium Methylibium petroleiphilum BACTERIAL Methylibium petroleiphilum PM1 Sanger 16x 677456 ATCC BAA-1232 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Environmental None Fresh water, Fresh water, Sludge Facultative Rod-shaped Methylotroph, Phototroph Mesophile 30 Compost biofilter from a water pollution treatment plant in Los Angeles USA 69.3 Public Gc00501 Gi00587 000108_GCAT 420662 10789 640069319 4044 4619 1 1 NC_008825 NCBI, DOE Joint Genome Institute Lawrence Livermore National Lab, DOE Joint Genome Institute DOE J Bacteriol 189, 931-45 January 29, 2007 Bruce D Archaea Crenarchaeota Desulfurococcales Thermoprotei Pyrodictiaceae Hyperthermus Hyperthermus butylicus ARCHAEAL Hyperthermus butylicus DSM 5456 159206 DSM 5456 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Marine 7 Anaerobe Coccus-shaped Motile Nonsporulating Hyperthermophile 95 - 108 Sea floor of a solfataric environment at 9m depth off the shore of Sao Miguel Island Azores European Consortium 53 Public Gc00500 Gi00301 000109_GCAT 415426 208 640069314 1667 1671 1 0 NC_008818 NCBI Epidauros Biotechnologie AG, Univ of Copenhagen European Union Archaea 2, 127-35 January 22, 2007 Garrett RA Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus NATL1A Genome CYANOBACTERIA Complete Complete and Published Carbon cycle, Environmental, Marine Microbial Initiative (MMI) None Marine Oval-shaped Singles Nonmotile Photosynthetic Mesophile North Atlantic Ocean at a depth of 30m on April 1990 USA 34 Public Gc00499 Gi01228 000110_GCAT 167555 15660 640069325 1864 2288 1 0 NC_008819 NCBI, JCVI MIT, J. Craig Venter Institute Moore Foundation PLoS Genetics 3, e231 January 22, 2007 Chisholm S Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9303 Genome CYANOBACTERIA Complete Complete and Published Carbon cycle, Environmental, Marine Microbial Initiative (MMI) None Marine Oval-shaped Singles Nonmotile Photosynthetic Mesophile Sargasso Sea at a depth of 100m on July 1992 USA 50 Public Gc00498 Gi00873 3347 000111_GCAT 59922 13496 640069323 2682 3177 1 0 NC_008820 NCBI, JCVI MIT, J. Craig Venter Institute Moore Foundation PLoS Genetics 3, e231 January 22, 2007 Chisholm S Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus AS9601 Genome CYANOBACTERIA Complete Complete and Published Carbon cycle, Environmental, Marine Microbial Initiative (MMI) None Marine Oval-shaped Singles Nonmotile Photosynthetic Mesophile Arabian Sea at a depth of 50m on November 1995 USA 31.3 Public Gc00497 Gi00874 000112_GCAT 146891 13548 640069321 1669 2024 1 0 NC_008816 NCBI, JCVI MIT, J. Craig Venter Institute Moore Foundation PLoS Genetics 3, e231 January 19, 2007 Chisholm S Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9515 Genome CYANOBACTERIA Complete Complete and Published Carbon cycle, Environmental, Marine Microbial Initiative (MMI) None Marine, Surface water Oval-shaped Singles Nonmotile Photosynthetic Mesophile Equatorial Pacific on June 1995, Surface waters USA 30.8 Public Gc00496 Gi00875 000113_GCAT 167542 13617 640069324 1704 2004 1 0 NC_008817 NCBI, JCVI MIT, J. Craig Venter Institute Moore Foundation PLoS Genetics 3, e231 January 19, 2007 Chisholm S Eukaryota Ascomycota Eurotiales Eurotiomycetes Trichocomaceae Emericella Emericella nidulans EUKARYAL Aspergillus (Emericella) nidulans FGSC A4 Sanger 13x Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Fungal Genome Initiative (FGI), Human Pathogen, Medical, Model organism Aspergillosis Host Mesophile USA 50.34 Public Gc00495 Gi00040 000114_GCAT 227321 130 640281000 30166 9727 8 0 AACD00000000 NCBI, Broad Institute Broad Institute NIH-NHGRI Nature 438, 1105-15 December 22, 2005 Roe B Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O1:K1:H7 APEC O1:K1:H7 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Avian Pathogen, Medical None Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile Lesion site of a dead turkey with colibacillosis USA 50.5 Public Gc00494 176528 000115_GCAT 405955 16718 640753023 5082 5113 1 4 NC_008563 NCBI Iowa State Univ J Bacteriology 189, 3228-3236 October 4, 2006 Johnson T Archaea Crenarchaeota Cenarchaeales Thermoprotei Cenarchaeaceae Cenarchaeum Cenarchaeum symbiosum ARCHAEAL Cenarchaeum symbiosum A Axinella mexicana Metagenome CRENARCHAEOTA-CENARCHAEA Complete Complete and Published Evolutionary None Coastal, Host, Marine Aerobe Rod-shaped Nonsporulating Psychrophile 10 0-20 meters below sea level off the coast of Santa Barbara USA 57.7 Public Gc00493 Gi00134 69323 000116_GCAT 414004 202 641522613 2045 2107 1 0 NS_000189 NCBI, Integr8 DOE Joint Genome Institute, MBARI NSF PNAS 10, 18296-301 November 29, 2006 DeLong EF Bacteria Proteobacteria Chromatiales Gammaproteobacteria Ectothiorhodospiraceae Halorhodospira Halorhodospira halophila BACTERIAL Halorhodospira halophila SL1 Sanger 12x 268229 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Fresh water Spiral-shaped Motile Photosynthetic, Phototroph Mesophile Halophile USA 68 Public Gc00492 Gi00973 194409 000117_GCAT 349124 15767 639633026 2674 2514 1 0 NC_008789 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished January 11, 2007 Bruce D Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni 81-176 Penner serotype 23/36 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Poultry Pathogen Diarrhea, Food poisoning, Gastroenteritis Animal feces, Host, Wastewater Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Mesophile Feces of an 9-year-old girl with diarrhea in Minnesota in 1981 USA 30 Public Gc00491 Gi01259 150873 000118_GCAT 354242 16135 639633017 1616 1865 1 2 NC_008787 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished January 9, 2007 Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Verminephrobacter Verminephrobacter eiseniae BACTERIAL Verminephrobacter eiseniae EF01-2 Sanger 9.5x Eisenia foetida Genome PROTEOBACTERIA-BETA Complete Complete and Published Evolutionary None Host, Soil Mesophile Kidney of the earthworm Eisenia foetida USA 65 Public Gc00490 Gi01545 179440 000119_GCAT 391735 17187 639633065 5566 5165 1 1 NC_008786 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished January 9, 2007 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis BCG Pasteur 1173P2 Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Biotechnological, Cattle Pathogen, Human Pathogen, Medical, Vaccine development Bovine tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile France 65.6 Public Gc00489 Gi00381 184499 000120_GCAT 410289 18059 639633040 4374 4033 1 0 NC_008769 NCBI, Institut Pasteur Institut Pasteur Unpublished January 8, 2007 Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei SAVP 1 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Glanders, Pneumonia Host Aerobe Rod-shaped Motile Mesophile USA 68 Public Gc00488 Gi00925 188010 000121_GCAT 320388 13947 639633015 5200 5303 2 0 NC_008785, NC_008784 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished January 5, 2007 Bacteria Proteobacteria Neisseriales Betaproteobacteria Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis serogroup C, FAM18 118117 Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Meningitis, Septicemia Host Aerobe Coccus-shaped Pairs Nonmotile Nonsporulating Mesophile 35 - 37 Patient with meningococcal septicemia United Kingdom 51.6 Public Gc00487 Gi00402 187018 000122_GCAT 272831 255 639633045 2194 2054 1 0 NC_008767 NCBI, Sanger Institute Sanger Institute, Max Planck Institute Beowulf Genomics Unpublished January 4, 2007 Parkhill J Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Polaromonas Polaromonas naphthalenivorans BACTERIAL Polaromonas naphthalenivorans CJ2 Sanger 11x 376940 ATCC BAA-779, DSM 15660 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Environmental None Fresh water Aerobe Coccus-shaped Nonmotile Nonsporulating Heterotroph Mesophile 20 Naphthalene-contaminated freshwater sediment USA 62.5 Public Gc00486 Gi00957 194205 000123_GCAT 365044 13418 639633051 4410 5046 1 8 NC_008781 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Environ Microbiology Epub January 4, 2007 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Acidovorax Acidovorax sp. JS42 BACTERIAL Acidovorax sp JS42 Sanger 11x 579311 Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile Nitrobenzene-contaminated sediment USA 66.2 Public Gc00485 Gi00998 174244 000124_GCAT 232721 15685 639633003 4448 4443 1 2 NC_008782 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished January 4, 2007 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Acidovorax Acidovorax avenae BACTERIAL Acidovorax avenae citrulli AAC00-1 Sanger 11x Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Plant Pathogen Bacterial fruit blotch Host Aerobe Rod-shaped Motile Nonsporulating Mesophile USA 68.5 Public Gc00484 Gi00997 199634 000125_GCAT 397945 15708 639633002 5352 4920 1 0 NC_008752 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished January 4, 2007 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella sp. W3-18-1 BACTERIAL Shewanella sp. W3-18-1 Sanger 12x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Deep sea, Marine, Sediment Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile "Marine sediment; under 997 m depth of oxic water from the Washington coast, Pacific Ocean" USA 44.6 Public Gc00483 Gi01396 198298 000126_GCAT 351745 13902 639633059 4708 4342 1 0 NC_008750 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished January 3, 2007 Bruce D Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris vulgaris DP4 Sanger 10x Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental, Oil industry None Sediment Anaerobe Rod-shaped Singles Motile Nonsporulating Mesophile heavy metal-impacted lake sediment USA 63 Public Gc00482 Gi01250 165016 000127_GCAT 391774 17227 639633022 3462 3273 1 1 NC_008751 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Environmental Microbiology ePUB January 3, 2007 Stahl DA Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia enterocolitica BACTERIAL Yersinia enterocolitica 8081 0:8 719455 NCTC 13174 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis Host Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 28 - 30 European Consortium 42 Public Gc00481 Gi00703 41539 000001_GCAT 393305 190 640069335 4615 4279 1 1 NC_008800 NCBI, Sanger Institute Sanger Institute, St. Bartholomew's Hospital, Institut Pasteur Beowulf Genomics PLoS Genet 2, e206 December 15, 2006 Parkhill J Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Micrococcaceae Arthrobacter Arthrobacter aurescens BACTERIAL Arthrobacter aurescens TC1 Genome ACTINOBACTERIA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile 30 Atrazine-contaminated soil in South Dakota USA 62.3 Public Gc00480 Gi00035 176825 000129_GCAT 290340 12512 639633005 4597 4844 1 2 NC_008711 NCBI Univ of Minnesota, J. Craig Venter Institute NSF PLoS Genet 2, e214 December 28, 2006 Sadowsky MJ Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium vanbaalenii BACTERIAL Mycobacterium vanbaalenii PYR-1 Sanger 12x 160662 PYR-1, DSM 7251, NRRL B-24157 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Sediment Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 24 - 37 "oil-contaminated sediment in Redfish Bay, TX, USA" USA 67.8 Public Gc00479 Gi01024 000130_GCAT 350058 15761 639633044 6491 6092 1 NC_008726 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished December 27, 2006 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Psychromonadaceae Psychromonas Psychromonas ingrahamii BACTERIAL Psychromonas ingrahamii 37 Sanger 11x 677503 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Environmental None Deep sea, Marine Anaerobe Rod-shaped Nonmotile Psychrophile Sea ice off Point Barrow in northern Alaska USA 40.1 Public Gc00478 Gi01471 000131_GCAT 357804 16187 639633052 4559 3978 1 0 NC_008709 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE BMC Genomics 9, 210 December 22, 2006 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella amazonensis BACTERIAL Shewanella amazonensis SB2B Sanger 9x 121955 ATCC 700329 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Mud, Sediment Facultative Rod-shaped Singles, Pairs Motile Nonsporulating Heterotroph Mesophile Shallow marine deposits of the Amazon River delta off of the coast of Brazil USA 53.6 Public Gc00477 Gi00550 193925 000132_GCAT 326297 13385 639633057 4306 3901 1 0 NC_008700 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished December 21, 2006 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium sp. KMS BACTERIAL Mycobacterium sp KMS Sanger 12x Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Creosote-contaminated soil, Soil Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA 68.4 Public Gc00476 Gi01022 000133_GCAT 189918 16081 639633042 5737 6133 1 2 NC_008705 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished December 20, 2006 Bruce D Archaea Crenarchaeota Thermoproteales Thermoprotei Thermoproteaceae Pyrobaculum Pyrobaculum islandicum ARCHAEAL Pyrobaculum islandicum DSM 4184 Sanger 12x 158684 DSM 4184 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Fresh water Anaerobe Rod-shaped Motile Nonsporulating Hyperthermophile 100 Water from a geothermal power plant in Iceland USA 49.6 Public Gc00475 Gi01057 178974 000134_GCAT 384616 16743 639633053 1826 2110 1 0 NC_008701 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Unpublished December 20, 2006 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Nocardioidaceae Nocardioides Nocardioides sp. JS614 BACTERIAL Nocardioides sp. JS614 352430 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 30 USA 71.7 Public Gc00474 Gi00411 129374 000135_GCAT 196162 12738 639633046 4985 5016 1 1 NC_008699 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished December 18, 2006 Bruce D Archaea Crenarchaeota Thermoproteales Thermoprotei Thermofilaceae Thermofilum Thermofilum pendens ARCHAEAL Thermofilum pendens Hrk 5 Sanger 11x Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Fresh water Anaerobe Rod-shaped Motile Nonsporulating Hyperthermophile 88 Solfataric hot spring in Iceland USA 57.7 Public Gc00473 Gi01042 181142 000136_GCAT 368408 16331 639633064 1781 1964 1 1 NC_008698 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE J. Bacteriology Epub December 18, 2006 Anderson I Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Paracoccus Paracoccus denitrificans BACTERIAL Paracoccus denitrificans PD1222 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological, Energy conservation, Evolutionary None Soil Aerobe Coccus-shaped Nonmotile Nonsporulating Mesophile 25 - 30 USA 66.7 Public Gc00472 Gi00431 191706 000137_GCAT 318586 13020 639633048 4582 5194 2 1 NC_008687, NC_008686 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Georgia Institute of Technology DOE Unpublished December 13, 2006 Bruce D Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chlorobium Chlorobium phaeobacteroides BACTERIAL Chlorobium phaeobacteroides DSM 266 156549 DSM 266 Genome CHLOROBI Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water Facultative Rod-shaped Chains, Singles Nonmotile Nonsporulating Photosynthetic Mesophile Anoxic sulfide containing water 19.5 m below surface of meromictic Lake Blankvann in Norway USA 48.4 Public Gc00471 Gi00146 000138_GCAT 290317 12609 639633020 3133 2848 1 0 NC_008639 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished December 11, 2006 Bruce D Bacteria Actinobacteria Bifidobacteriales Actinobacteria (class) Bifidobacteriaceae Bifidobacterium Bifidobacterium adolescentis BACTERIAL Bifidobacterium adolescentis ATCC 15703 5333 ATCC15703 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological, Food industry None Host, Intestinal microflora Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Japan 59.2 Public Gc00470 Gi01394 326974 000139_GCAT 367928 16321 639633010 2089 1716 1 0 NC_008618 NCBI Gifu Univ Unpublished December 6, 2006 Suzuki T Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium ulcerans BACTERIAL Mycobacterium ulcerans Agy99 Sanger 8x Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Buruli ulcer Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 32 ulcerative lesion on the right elbow of a female patient from the Ga district of Ghana in 1999 France 65.5 Public Gc00469 Gi00386 197037 000140_GCAT 362242 16230 642555140 5631 4291 1 1 NC_008611 NCBI, Institut Pasteur, BuruList Institut Pasteur Genome Res 17, 192-200 December 1, 2006 Bacteria Proteobacteria Gammaproteobacteria Candidatus Ruthia magnifica BACTERIAL Candidatus Ruthia magnifica Cm Sanger 14x Calyptogena magnifica Metagenome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Environmental None Endosymbiont, Host, Hydrothermal vent, Marine Chemoautotroph Mesophile Non isolate USA 35 Public Gc00468 000141_GCAT 413404 16841 639633019 1160 1156 1 0 NC_008610 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Science 315, 998-1000 December 1, 2006 Bruce D Bacteria Proteobacteria Desulfuromonadales Deltaproteobacteria Pelobacteraceae Pelobacter Pelobacter propionicus BACTERIAL Pelobacter propionicus DSM 2379 Sanger 15x 157958 DSM 2379, NBRC 103807 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological None Fresh water, Marine Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 30 Creek mud; Germany USA 59 Public Gc00467 Gi00807 137797 000142_GCAT 338966 13384 639633050 4008 3978 1 2 NC_008609 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Massachusetts Amherst DOE Unpublished November 30, 2006 Bruce D Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter fetus BACTERIAL Campylobacter fetus fetus 82-40 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Poultry Pathogen Bacteremia, Infertility, Meningitis, Septicemia Host, Wastewater Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Mesophile Blood of a human patient who was having a renal transplant USA 33 Public Gc00466 Gi01265 191674 000143_GCAT 360106 16293 639633016 1773 1870 1 0 NC_008599 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished November 29, 2006 Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella novicida BACTERIAL Francisella tularensis novicida U112 10.3x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical None Fresh water Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile USA 32.5 Public Gc00465 Gi01161 186071 000144_GCAT 401614 16088 639633024 1910 1829 1 0 NC_008601 NCBI, Univ of Washington Univ of Washington Genome Biol. 8, R102 November 28, 2006 Rohmer L Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium novyi BACTERIAL Clostridium novyi NT Genome FIRMICUTES Complete Complete and Published Anti-tumor agent, Medical None Host, Soil Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile USA 28.9 Public Gc00464 179771 000145_GCAT 386415 16820 639633021 2547 2547 1 0 NC_008593 NCBI Howard Hughes Medical Institute, Johns Hopkins Kimmel Comprehensive Cancer Center Nature Biotechnology 24, 1573-80 November 28, 2006 Zhou S Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis Al Hakam 24x Genome FIRMICUTES Complete Complete and Published Agricultural, Biotechnological, Insect Pathogen Sotto disease Host, Soil Facultative Rod-shaped Motile Sporulating Mesophile Severe human tissue necrosis USA 35.4 Public Gc00463 191300 000146_GCAT 412694 18255 639633008 5257 5090 1 1 NC_008600 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute DOE J. Bacteriology 189, 3680-3681 November 27, 2004 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium avium BACTERIAL Mycobacterium avium 104 Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Respiratory infection, Tuberculosis type pulmonary infection Fresh water, Host, Soil Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 AIDS patient USA 69 Public Gc00462 Gi00380 198166 000147_GCAT 243243 88 639633039 5475 5339 1 0 NC_008595 NCBI J. Craig Venter Institute NIH-NIAID Unpublished November 20, 2006 Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium smegmatis BACTERIAL Mycobacterium smegmatis MC2 155 117498 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Soft tissue lesions Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 Mutant of M smegmatis isolated on 1990 USA 67.4 Public Gc00461 Gi00384 232052 000148_GCAT 246196 92 639633041 6988 6978 1 0 NC_008596 NCBI J. Craig Venter Institute NIH-NIAID Unpublished November 20, 2006 Fleischmann RD Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Acidothermaceae Acidothermus Acidothermus cellulolyticus BACTERIAL Acidothermus cellulolyticus 11B Sanger 13.5x 301709 ATCC 43068 Genome ACTINOBACTERIA Complete Complete and Published Biofuels, Biotechnological, Energy production, Ethanol production None Fresh water, Hot spring Aerobe Sporulating Thermophile 58 Acid hot spring in Yellowstone USA 66.9 Public Gc00460 Gi00919 11627 000149_GCAT 351607 16097 639633001 2445 2266 1 0 NC_008578 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Genome Research Epub November 9, 2006 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella BACTERIAL Shewanella sp. ANA-3 Sanger 11x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Host, Soil Anaerobe Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile 37 Arsenate treated wood pier that was in a brackish estuary (Eel Pond) in Woods Hole Massachusetts USA 48 Public Gc00459 Gi00967 196399 000150_GCAT 94122 13905 639633058 4972 4649 1 1 NC_008577 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished November 8, 2006 Bruce D Bacteria Proteobacteria Magnetococcus Magnetococcus sp. MC-1 BACTERIAL Magnetococcus sp. MC-1 Sanger 16x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Marine Facultative Coccus-shaped Motile Mesophile Water from the Pettaquamscutt Estuary in Rhode Island USA 54.2 Public Gc00458 Gi00343 193560 000151_GCAT 156889 262 639633036 4700 3869 1 0 NC_008576 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of South California DOE Appl Environ Microbiology Epub November 8, 2006 Bruce D Bacteria Bacteroidetes Flavobacteriales Flavobacteria Flavobacteriaceae Gramella Gramella forsetii BACTERIAL Gramella forsetii KT0803 Genome BACTEROIDETES Complete Complete and Published Environmental None Marine Aerobe Rod-shaped Mesophile Concentrated seawater collected from the German Bight in the North Sea Germany 36.6 Public Gc00457 Gi01472 188892 000024_GCAT 411154 19061 639633025 3789 3640 1 0 NC_008571 NCBI Max Planck Institute MGE Unpublished November 6, 2006 Gloeckner FO Bacteria Proteobacteria Aeromonadales Gammaproteobacteria Aeromonadaceae Aeromonas Aeromonas hydrophila BACTERIAL Aeromonas hydrophila hydrophila ATCC7966 37798 ATCC7966, CDC 359-60, NCTC 8049 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Fish Pathogen, Human Pathogen, Medical, Poultry Pathogen, Swine Pathogen Food poisoning, Gastroenteritis, Septicemia Food, Fresh water, Fresh water, Wastewater Facultative Rod-shaped Motile Heterotroph Mesophile 22 - 28 Canned milk from the United States USA 61.6 Public Gc00456 Gi00018 197034 000153_GCAT 380703 16697 639633004 4744 4447 1 0 NC_008570 NCBI J. Craig Venter Institute, Univ of Maryland NSF J Bacteriology 188, 8272-82 November 6, 2006 Martin-Carnahan A Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes Manfredo (M5) M5 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Rheumatic fever Host, Nasopharyngeal microflora Facultative Coccus-shaped Chains, Pairs Nonmotile Nonsporulating Mesophile 30 - 35 Patient in the 1950's in Chicago United Kingdom 38.6 Public Gc00455 Gi00615 000154_GCAT 160491 270 640069333 1840 1915 1 0 NC_009332 NCBI, Sanger Institute Sanger Institute, Univ of Newcastle Beowulf Genomics J Bacteriology 189, 1473-1477 September 29, 2006 Parkhill J Bacteria Proteobacteria Rhodocyclales Betaproteobacteria Rhodocyclaceae Azoarcus Azoarcus sp. BH72 BACTERIAL Azoarcus sp. BH72 49226 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Biotechnological None Host, Obligate endophyte, Soil Facultative Rod-shaped Motile Diazotroph Mesophile 26 Germany 67.9 Public Gc00454 Gi00046 6802 000155_GCAT 62928 13217 639633007 4376 4062 1 0 NC_008702 NCBI, Bielefeld Univ MWG-Biotech, Bielefeld Univ BMBF Nat Biotechnol 24, 1385-91 October 22, 2006 Puhler A Bacteria Proteobacteria Syntrophobacterales Deltaproteobacteria Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans BACTERIAL Syntrophobacter fumaroxidans MPOB 161775 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioreactors, Biotechnological, Carbon cycle, Energy production, Hydrogen production None Fresh water Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Granular sludge from an anaerobic sludge bed reactor USA 59 Public Gc00453 Gi00642 138280 000156_GCAT 335543 13013 639633063 4990 4219 1 0 NC_008554 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 26, 2006 Bruce D Archaea Euryarchaeota Methanosarcinales Methanomicrobia Methanosaetaceae Methanosaeta Methanosaeta thermophila ARCHAEAL Methanosaeta thermophila PT Sanger 11x 159807 DSM 6194 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biofuels, Biotechnological, Energy production None Fresh water, Rice paddies, Sediment Anaerobe Nonmotile Nonsporulating Lithotroph Thermophile USA 53.5 Public Gc00452 Gi00974 152431 000157_GCAT 349307 15765 639633038 1879 1833 1 0 NC_008553 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Unpublished October 25, 2006 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus LMD-9 493745 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Yogurt production None Milk Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Thermotolerant 37 USA 39.1 Public Gc00451 Gi00623 188398 000158_GCAT 322159 13773 639633062 1856 1888 1 2 NC_008532 DOE Joint Genome Institute Univ of Nebraska, DOE Joint Genome Institute, Fidelity Systems Inc DOE PNAS 103, 15611-6 October 18, 2006 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis cremoris SK11 348311 Genome FIRMICUTES Complete Complete and Published Biotechnological, Cheese production, Food industry None Facultative Coccus-shaped Nonmotile Nonsporulating Mesophile 40 USA 35.9 Public Gc00450 Gi00319 188476 000159_GCAT 272622 401 639633031 2438 2670 1 5 NC_008527 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Fidelity Systems Inc, Utah State Univ DOE PNAS 103, 15611-6 October 18, 2006 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia HI2424, BCC1 Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Pneumonia Host, Soil Facultative Rod-shaped Motile Mesophile Agricultural soil in upstate NY USA 66.4 Public Gc00449 Gi00806 133603 000160_GCAT 331272 13918 639633014 7536 7116 3 1 NC_008542-4 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 25, 2006 Bruce D Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Roseobacter Roseobacter denitrificans BACTERIAL Roseobacter denitrificans OCh 114 Sanger 9.6x 109965 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Environmental None Fresh water Aerobe Rod-shaped Motile Photosynthetic, Phototroph Mesophile USA 59 Public Gc00448 Gi00726 5651 000161_GCAT 375451 16426 639633056 4133 4229 1 4 NC_008209 NCBI, TGen TGen, Arizona State Univ NSF J Bacteriology 189, 683-690 June 22, 2006 Blankenship RE Eukaryota Apicomplexa Aconoidasida Theileriidae Theileria Theileria annulata EUKARYAL Theileria annulata Ankara clone C9 Sanger 10x Genome PROTISTS-APICOMPLEXA Quality Draft Complete and Published Animal Pathogen, Medical Tropical theileriosis Host Mesophile United Kingdom 32.5 Public Gc00296 Gi00651 000162_GCAT 353154 153 8351 3792 4 0 NW_001091927-34 NCBI, Sanger Institute Sanger Institute, Univ of Glasgow Beowulf Genomics Science 309, 134-7 July 1, 2005 Berriman M Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Micrococcaceae Arthrobacter Arthrobacter sp. FB24 BACTERIAL Arthrobacter sp. FB24 Genome ACTINOBACTERIA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile Chromate and xylene enriched soil USA 65.5 Public Gc00445 Gi00036 133793 000163_GCAT 290399 12640 639633006 4698 4671 1 3 NC_008541 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 24, 2006 Bruce D Bacteria Acidobacteria Solibacterales Solibacteres Solibacteraceae Solibacter Solibacter usitatus BACTERIAL Solibacter usitatus Ellin6076 Genome ACIDOBACTERIA Complete Complete and Published Bioremediation, Environmental None Fresh water, Soil Aerobe Rod-shaped Clusters Nonmotile Nonsporulating Chemoorganotroph, Heterotroph, Oligotroph Mesophile 30 "rotationally grazed pasture of perennial ryegrass and white clover in Victoria, Australia" USA 61.9 Public Gc00446 Gi00006 187098 000164_GCAT 234267 12638 639633060 9965 8056 1 0 NC_008536 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Appl Environ Microbiol. Epub October 16, 2006 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus gasseri BACTERIAL Lactobacillus gasseri ATCC 33323 13671 ATCC 33323 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Host, Intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile 25 - 35 USA 35.3 Public Gc00447 Gi00314 74642 000165_GCAT 324831 84 639633030 1900 1949 1 0 NC_008530 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, North Carolina State Univ, Fidelity Systems Inc DOE PNAS 103, 15611-6 October 18, 2006 Klaenhammer T Bacteria Firmicutes Lactobacillales Bacilli Leuconostocaceae Leuconostoc Leuconostoc mesenteroides BACTERIAL Leuconostoc mesenteroides mesenteroides ATCC 8293 505624 ATCC 8293 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production None Facultative Coccus-shaped Nonmotile Mesophile 20 - 30 USA 37.7 Public Gc00444 Gi00330 193258 000166_GCAT 203120 315 639633034 2038 2102 1 1 NC_008531 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, North Carolina State Univ, Fidelity Systems Inc DOE PNAS 103, 15611-6 October 24, 2006 Breidt F Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus delbrueckii BACTERIAL Lactobacillus delbrueckii bulgaricus ATCC BAA-365 373993 ATCC BAA-365 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production None Host, Intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile 42 Derived from a French starter culture USA 49.7 Public Gc00443 Gi00313 196186 000167_GCAT 321956 403 639633029 1900 1973 1 0 NC_008529 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Fidelity Systems Inc, Univ of Wisconsin-Madison DOE PNAS 103, 15611-6 October 18, 2006 Bruce D Eukaryota Hymenostomatida Oligohymenophorea Tetrahymenidae Tetrahymena Tetrahymena thermophila EUKARYAL Tetrahymena thermophila SB210 (Macronucleus) Sanger Genome PROTISTS-ALVEOLATA Quality Draft Complete and Published Biotechnological, Protein production None Fresh water Mesophile USA 22.3 Public Gc00442 Gi00648 000168_GCAT 312017 12564 103927 27000 225 0 NZ_AAGF00000000 NCBI, J. Craig Venter Institute J. Craig Venter Institute NSF PLoS Biol 4, e286 September 6, 2006 Eisen JA Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola Cc Cinara cedri Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Endosymbiont, Host, Insect endosymbiont Mesophile Spain 20.1 Public Gc00441 Gi00103 182084 000169_GCAT 372461 16372 643348521 420 431 1 0 NC_008513 NCBI Univ of Valencia Science 314, 312-3 October 18, 2006 Moya A Bacteria Firmicutes Lactobacillales Bacilli Leuconostocaceae Oenococcus Oenococcus oeni BACTERIAL Oenococcus oeni PSU-1 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Malolactic fermentation None Facultative Coccus-shaped Nonmotile Nonsporulating Mesophile 17 - 25 Penn State University USA 37.9 Public Gc00440 Gi00417 175948 000170_GCAT 203123 317 639633047 1800 1789 1 0 NC_008528 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of California, Davis, Fidelity Systems Inc DOE PNAS 103, 15611-6 October 18, 2006 Mills D Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Pediococcus Pediococcus pentosaceus BACTERIAL Pediococcus pentosaceus ATCC 25745 16204 ATCC 25745 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production None Fruits, Plants Facultative Coccus-shaped Nonmotile Nonsporulating Mesophile 30 USA 37.4 Public Gc00439 Gi00437 191453 000171_GCAT 278197 398 639633049 1800 1897 1 0 NC_008525 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Fidelity Systems Inc, Utah State Univ DOE PNAS 103, 15611-6 October 18, 2006 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus casei BACTERIAL Lactobacillus casei ATCC 334 28985 ATCC 334 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production None Host, Intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile 30 - 40 USA 46.6 Public Gc00438 Gi00311 185913 000172_GCAT 321967 402 639633028 2895 2921 1 1 NC_008526 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Fidelity Systems Inc, Utah State Univ DOE PNAS 103, 15611-6 October 18, 2006 Broadbent J Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae D39 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Meningitis, Otitis media, Pneumonia Host, Nasopharyngeal microflora Facultative Coccus-shaped Chains, Pairs Nonmotile Nonsporulating Mesophile 30 - 35 USA 40 Public Gc00437 Gi00732 187730 000173_GCAT 373153 16374 639633061 2000 2136 1 0 NC_008533 NCBI Indiana Univ, J. Craig Venter Institute NSF J Bacteriol 189, 38-51 October 12, 2006 Winkler ME Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus brevis BACTERIAL Lactobacillus brevis ATCC 367 13244 ATCC 367 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Host, Intestinal microflora, Soil Aerobe Rod-shaped Chains Motile Mesophile 25 - 35 USA 46 Public Gc00436 Gi00310 187897 000174_GCAT 387344 404 639633027 2291 2377 1 2 NC_008497 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, UCSD, Fidelity Systems Inc DOE PNAS 103, 15611-6 October 18, 2006 Bruce D Bacteria Proteobacteria Gammaproteobacteria Candidatus Carsonella Candidatus Carsonella ruddii BACTERIAL Candidatus Carsonella ruddii PV Pachypsylla venusta Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Evolutionary None Endosymbiont, Host, Insect endosymbiont Mesophile USA 16 Public Gc00435 000175_GCAT 387662 17977 639633018 159 244 1 0 NC_008512 NCBI RIKEN, Kitasato Univ Science 314, 267 October 17, 2006 Nakabachi, A Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Leptospiraceae Leptospira Leptospira borgpetersenii BACTERIAL Leptospira borgpetersenii hardjobovis JB197 Hardjo-bovis JB197 Genome SPIROCHAETES Complete Complete and Published Animal Pathogen, Medical Leptospirosis Fresh water, Host, Soil Aerobe Spiral-shaped Motile Nonsporulating Mesophile International 40 Public Gc00434 191861 000176_GCAT 355277 16148 639633032 3900 3228 2 0 NC_008510, NC_008511 NCBI, AGRF NADC, AGRF, Monash Univ PNAS 103, 14560-5 October 13, 2006 Zuerner R Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Leptospiraceae Leptospira Leptospira borgpetersenii BACTERIAL Leptospira borgpetersenii hardjobovis L550 Hardjo-bovis L550 Genome SPIROCHAETES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Leptospirosis Fresh water, Host, Soil Aerobe Spiral-shaped Motile Nonsporulating Mesophile Human clinical sample Australia 40 Public Gc00433 Gi00327 177086 000177_GCAT 355276 16146 639633033 3920 3264 2 0 NC_008508, NC_008509 NCBI, AGRF NADC, AGRF, Monash Univ PNAS 103, 14560-5 October 13, 2006 Zuerner R Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PA14 UCBPP Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Plant Pathogen Nocosomial infection, Opportunistic infection Fresh water, Host, Soil, Wastewater Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 25 - 30 Human clinical isolate USA 66.3 Public Gc00432 Gi00489 106485 000178_GCAT 208963 386 639279310 6537 6039 1 0 NC_008463 NCBI, Harvard Univ, Pseudomonas Genome DBase HPGC Genome Biol 7, R90 October 11, 2006 Ausubel FM Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisA53 Sanger 12x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Hydrogen production None Fresh water, Soil Facultative Rod-shaped Singles Motile Phototroph Mesophile 25 - 30 freshwater sediment samples from De Biesbosch and Haren, the Netherlands USA 64.4 Public Gc00431 Gi00961 174324 000179_GCAT 316055 15751 639279312 5505 5026 1 0 NC_008435 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE PNAS Epub October 4, 2006 Oda Y Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia cepacia AMMD Sanger 13x 681923 ATCC BAA-244, LMG 19182 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Biocontrol None Host, Rhizosphere, Rhizosphere-colonizing Facultative Rod-shaped Motile Nonsporulating Mesophile 30 - 42 Healthy pea plants in Wisconsin in 1985 USA 66.8 Public Gc00430 Gi00924 165641 000180_GCAT 339670 13490 637000047 7483 6811 3 1 NC_008390-2 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 21, 2006 Bruce D Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis OSU18 454, Sanger 39x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Tularemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile USA 32.2 Public Gc00429 Gi00943 250583 000181_GCAT 393011 17265 637000112 1895 1967 1 0 NC_008369 NCBI, BCM-HGSC BCM-HGSC NIH-NIAID J Bacteriol 188, 6977-6985 September 25, 2006 Petrosino J Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Hyphomonadaceae Hyphomonas Hyphomonas neptunium BACTERIAL Hyphomonas neptunium ATCC 15444 98403 ATCC 15444 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Marine Aerobe Rod-shaped Motile Mesophile 37 USA 61.9 Public Gc00428 Gi00302 165618 000182_GCAT 228405 15721 637000135 3705 3613 1 0 NC_008358 NCBI Univ of Georgia, J. Craig Venter Institute NSF J. Bacteriol 188, 6841-6850 September 14, 2006 Badger J Bacteria Firmicutes Clostridiales Clostridia Syntrophomonadaceae Syntrophomonas Syntrophomonas wolfei BACTERIAL Syntrophomonas wolfei Goettingen, DSM 2245B Sanger 11x 157804 DSM 2245B Genome FIRMICUTES Complete Complete and Published Bioremediation, Biotechnological, Carbon cycle, Energy production, Environmental, Hydrogen production None Anaerobe Spiral-shaped Motile Mesophile USA 44.9 Public Gc00427 Gi00643 154176 000183_GCAT 335541 13014 637000316 2936 2697 1 0 NC_008346 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 14, 2006 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella frigidimarina BACTERIAL Shewanella frigidimarina NCIMB 400 47442 NCIMB 400 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Facultative Rod-shaped Singles, Pairs Motile Nonsporulating Heterotroph Mesophile 20 - 22 North Sea near Aberdeen United Kingdom USA 41.6 Public Gc00426 Gi00553 171314 000184_GCAT 318167 13391 637000257 4845 4323 1 0 NC_008345 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 14, 2006 Bruce D Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Hyphomonadaceae Maricaulis Maricaulis maris BACTERIAL Maricaulis maris MCS10 Sanger 13x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Environmental None Fresh water Facultative Rod-shaped Motile Nonsporulating Mesophile 20 - 25 Puget Sound in Washington USA 62.7 Public Gc00425 Gi01017 000185_GCAT 394221 17333 637000157 3368 3184 1 0 NC_008347 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 14, 2006 Bruce D Bacteria Proteobacteria Nitrosomonadales Betaproteobacteria Nitrosomonadaceae Nitrosomonas Nitrosomonas eutropha BACTERIAL Nitrosomonas eutropha C91 (C71) 267213 Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Environmental None Fresh water Aerobe Motile Autotroph, Chemolithotroph Mesophile USA 48.5 Public Gc00424 Gi00407 137518 000186_GCAT 335283 13913 637000196 2661 2730 1 2 NC_008344 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 13, 2006 Bruce D Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Acetobacteraceae Granulibacter Granulibacter bethesdensis BACTERIAL Granulibacter bethesdensis CGDNIH1 689850 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Chronic granulomatous Host, Lymph nodes Rod-shaped Mesophile 35 39 year old man with Chronic granulomatous disease USA 59 Public Gc00423 Gi01540 000187_GCAT 391165 17111 637000123 2708 2553 1 0 NC_008343 NCBI RML-NIAID, Integrated Genomics Inc NIH J Bacteriol 189, 8727-36 September 13, 2006 Holland SM Bacteria Proteobacteria Chromatiales Gammaproteobacteria Ectothiorhodospiraceae Alkalilimnicola Alkalilimnicola ehrlichei BACTERIAL Alkalilimnicola ehrlichei MLHE-1 Sanger 12x 689443 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Environmental None Fresh water Anaerobe Chemoautotroph, Chemolithotroph Mesophile Mono Lake in California USA 67.5 Public Gc00422 Gi00971 172488 000188_GCAT 187272 15763 637000005 3275 2994 1 0 NC_008340 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 12, 2006 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella sp. MR-4 BACTERIAL Shewanella sp. MR-4 Sanger 11x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Anaerobe Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile Sea-water; oxic zone; 16oC; 5 m depth in the Black sea USA 47 Public Gc00421 Gi00968 166706 000189_GCAT 60480 13904 637000259 4706 4213 1 0 NC_008321 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 1, 2006 Bruce D Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium difficile BACTERIAL Clostridium difficile 630 (epidemic type X) 692637 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Swine Pathogen Colitis, Diarrhea, Peritonitis Host Obligate anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile United Kingdom 29 Public Gc00420 Gi00158 630 000190_GCAT 272563 78 640069308 4290 3989 1 1 NC_009089 NCBI, Sanger Institute, ClostriDB Sanger Institute Beowulf Genomics Nature Genetics 38(7):779-86 July 1, 2006 Parkhill J Eukaryota Chlorophyta Mamiellales Prasinophyceae Ostreococcus Ostreococcus tauri EUKARYAL Ostreococcus tauri OTH95 Sanger Genome PLANTS-CHLOROPHYTA Quality Draft Complete and Published Evolutionary None Fresh water Coccus-shaped Photosynthetic Mesophile Thau lagoon in France France Public Gc00419 Gi00579 000191_GCAT 70448 12912 12560 7892 20 0 CR954201 NCBI, algaeBASE Laboratoire Arago PNAS 103, 11647-52 August 1, 2006 Moreau H Bacteria Firmicutes Bacillales Bacilli Listeriaceae Listeria Listeria welshimeri BACTERIAL Listeria welshimeri SLCC5334 6b 14895 ATCC 35897, DSM 20650, CIP 8149, SLCC 5334 Genome FIRMICUTES Complete Complete and Published Medical None Food, Fresh water, Soil Facultative Rod-shaped Singles, Chains Motile Nonsporulating Chemoorganotroph Mesophile Germany 36.4 Public Gc00418 Gi00334 187374 000192_GCAT 386043 13443 639633035 2814 2948 1 0 NC_008555 NCBI, Univ of Bielefeld Univ of Giessen, Univ of Wuerzburg BMBF J Bacteriol 188, 7405-15 October 25, 2006 Chakraborty T Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides BACTERIAL Rhodobacter sphaeroides 2.4.1 240801 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological, Energy production, Environmental None Facultative Rod-shaped Chains Motile Photosynthetic Mesophile 25 - 35 USA 68.8 Public Gc00417 Gi00508 5796 000193_GCAT 272943 56 640069327 4131 4372 2 3 NC_007494, NC_007493 NCBI, Univ of Texas - Houston, BCM-HGSC, ORNL, DOE Joint Genome Institute Univ of Texas - Houston, BCM-HGSC, DOE Joint Genome Institute DOE, NIH-NIGMS Unpublished October 7, 2005 Kaplan S Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CC9311 BACTERIAL Prochlorococcus sp. CC9311 529133 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Ocean carbon cycle None Marine Motile Photoautotroph, Photosynthetic Mesophile Oligotrophic edge of the California Current at 95m depth in 1993 USA 52 Public Gc00416 Gi00638 172726 000194_GCAT 64471 12530 637000309 2606 2951 1 0 NC_008319 NCBI UCSD, J. Craig Venter Institute NSF PNAS 103, 13555-9 September 1, 2006 Palenik BP Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella sp. MR-7 BACTERIAL Shewanella sp. MR-7 Sanger 9x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Anaerobe Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile Sea-water; anoxic zone; high NO3; 60 m depth in the Black sea USA 47 Public Gc00415 Gi00969 9073 000195_GCAT 60481 13903 637000260 4792 4289 1 1 NC_008322 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished September 1, 2006 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Cupriavidus Cupriavidus necator BACTERIAL Ralstonia eutropha H16 122962 ATCC 17699 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioplastic producer, Bioremediation, Biotechnological, Environmental None Fresh water, Soil Aerobe Rod-shaped Motile Chemoautotroph, Heterotroph Mesophile 30 Sludge Germany 66 Public Gc00414 Gi00499 173855 000196_GCAT 381666 13603 640427136 6964 6709 2 0 NC_008313, NC_008314 NCBI, Goettingen Genomics Laboratory, GenoMik Network Goettingen Humboldt Univ, Berlin, Univ of Munster, Georg-August-Univ Goettingen BMBF Unpublished August 30, 2006 Friedrich B Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Histophilus Histophilus somni BACTERIAL Haemophilus somnus 129PT Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Abortion, Arthritis, Constriction of blood vessels, Myocarditis, Pneumonia, Septicemia, Thrombotic-meningoencephalitis Host Facultative Rod-shaped Nonmotile Mesophile 35 - 37 USA 37 Public Gc00413 Gi00286 170898 000197_GCAT 205914 322 637000127 2007 1929 1 1 NC_008309 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Virginia Tech DOE J Bacteriology 189, 1890-8 August 22, 2006 Inzana T Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Frankiaceae Frankia Frankia alni BACTERIAL Frankia alni ACN14a Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Host, Soil Aerobe Filament-shaped Nonmotile Sporulating Chemoorganotroph Mesophile Green alder growing in Tadoussac Canada France 72 Public Gc00412 Gi00257 000198_GCAT 326424 17403 637000115 7497 6786 1 0 NC_008278 NCBI, FrankiaGenomes, Genoscope Genoscope Genome Res 17, 7-15 August 3, 2006 Choisne N Bacteria Proteobacteria Oceanospirillales Gammaproteobacteria Alcanivoracaceae Alcanivorax Alcanivorax borkumensis BACTERIAL Alcanivorax borkumensis SK2 267984 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Oil removal None Marine Aerobe Rod-shaped Nonmotile Oligotroph Mesophile Halophile Seawater sediment sample in the North Sea Germany 54.7 Public Gc00411 Gi00022 244434 000199_GCAT 393595 13005 637000004 3120 2857 1 0 NC_008260 NCBI, Bielefeld Univ Bielefeld Univ BMBF Unpublished July 23, 2006 Puhler A Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 5b 8401 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Dysenteria, Food poisoning, Shigellosis Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 China 50 Public Gc00410 Gi01501 168839 000200_GCAT 373384 16375 637000265 4574 4411 1 0 NC_008258 NCBI Microbial Genome Center, Beijing Chinese Ministry of Public Health BMC Genomics 7, 173 July 21, 2006 Nie H Archaea Euryarchaeota Halobacteriales Halobacteria Halobacteriaceae Haloquadratum Haloquadratum walsbyi ARCHAEAL Haloquadratum walsbyi HBSQ001, DSM 16790 Sanger 6.5x 681614 DSM 16790 Genome EURYARCHAEOTA-HALOBACTERIA Complete Complete and Published Biotechnological, Evolutionary None Fresh water, Solar saltern Square-shaped Nonmotile Phototroph Mesophile Halophile Spanish solar saltern Germany 47.9 Public Gc00409 169691 000201_GCAT 362976 17185 637000129 3132 2920 1 1 NC_008212 NCBI, Integr8 Max Planck Institute BMC Genomics 7, 169 July 24, 2006 Bolhuis H Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia afzelii BACTERIAL Borrelia afzelii PKo Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Acrodermatitis chronica atrophicans, Lyme disease Host Aerobe Spiral-shaped Motile Nonsporulating Mesophile Skin lesion from a Lyme disease patient in Europe in 1993 Germany 28.3 Public Gc00408 167322 000202_GCAT 390236 17057 639633011 905 1293 1 8 NC_008277 NCBI Fritz Lipmann Institute Unpublished August 2, 2006 Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Nocardiaceae Rhodococcus BACTERIAL Rhodococcus sp RHA1 Genome ACTINOBACTERIA Complete Complete and Published Ecological, Environmental None Soil Aerobe Coccus-shaped Filaments Nonmotile Nonsporulating Mesophile 30 Soil contaminated with gamma-hexachlorocyclohexane in Japan Canada 67.5 Public Gc00407 Gi00996 173649 000203_GCAT 101510 13693 637000234 7804 9233 1 3 NC_008268 NCBI, Genome British Columbia, Genome BC Genome British Columbia Genome Canada, Genome BC PNAS 103, 15582-7 July 31, 2006 Eltis L Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens ATCC 13124 10.29X 7940 ATCC 13124, DSM 756 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical, Poultry Pathogen, Swine Pathogen Dysenteria, Enterocolitis, Enterotoxemia, Food poisoning, Gas gangrene Host, Soil Obligate anaerobe Rod-shaped Singles, Pairs Motile Sporulating Chemoorganotroph Mesophile 37 USA 28.4 Public Gc00406 Gi00160 73346 000204_GCAT 195103 304 637000077 3256 3129 1 0 NC_008261 NCBI, ClostriDB J. Craig Venter Institute NIH-NIAID Genome Res 16, 1031-40 July 28, 2006 Paulsen I Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens SM101 9.4X Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical, Poultry Pathogen, Swine Pathogen Dysenteria, Enterocolitis, Enterotoxemia, Food poisoning, Gas gangrene Host Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile USA 28 Public Gc00405 Gi00161 166191 000205_GCAT 289380 12521 642555126 2897 2702 1 3 NC_008262 NCBI J. Craig Venter Institute Genome Res 16, 1031-40 July 28, 2006 Paulsen I Bacteria Proteobacteria Burkholderiales Betaproteobacteria Alcaligenaceae Bordetella Bordetella avium BACTERIAL Bordetella avium 197N 692383 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Medical, Poultry Pathogen Bordetellosis, Coryza, Respiratory infection Host Aerobe Rod-shaped Motile Mesophile 35 - 37 Spontaneous nalidixic acid-resistant derivative of virulent strain 197 International 61.6 Public Gc00404 Gi00082 281797 000206_GCAT 360910 27 641522607 3732 3465 1 0 AM167904, NC_010645 NCBI, Sanger Institute, Integr8 Sanger Institute, Drew Univ USDA, NSF J Bacteriol 188, 6002-15 February 1, 2006 Temple L Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O6:K15:H31 UPEC-536 O6:K15:H31 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Pyelonephritis, Urinary infection Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile Patient with acute pyelonephritis Germany 50.5 Public Gc00402 Gi00244 162759 000207_GCAT 362663 16235 637000104 4938 4786 1 0 NC_008253 NCBI, Goettingen Genomics Laboratory Univ of Wuerzburg, Goettingen Genomics Laboratory PNAS 103, 12879-84 July 13, 2006 Bruggemann H Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis tularensis FSC 198 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Pneumonia, Septicemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile Slovakia from a mite United Kingdom 32.3 Public Gc00401 Gi01182 000208_GCAT 393115 17375 637000113 1892 1875 1 0 NC_008245 NCBI Univ of Birmingham UK Department of Health PLoS ONE 2, e352 July 12, 2006 Pallen M Bacteria Bacteroidetes Sphingobacteriales Sphingobacteria Flexibacteraceae Cytophaga Cytophaga hutchinsonii BACTERIAL Cytophaga hutchinsonii ATCC 33406 109271 ATCC 33406 Genome BACTEROIDETES Complete Complete and Published Biotechnological None Fresh water, Soil Aerobe Rod-shaped Motile Mesophile 30 USA 39 Public Gc00400 Gi00185 163626 000209_GCAT 269798 54 637000087 4433 3880 1 0 NC_008255 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Wisconsin Milwaukee DOE Unpublished July 12, 2006 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Phyllobacteriaceae Mesorhizobium Mesorhizobium sp. BNC1 BACTERIAL Mesorhizobium sp. BNC1 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Host Aerobe Rod-shaped Motile Mesophile Mixed-culture enriched from sewage using the chelating agent EDTA USA 61.1 Public Gc00399 Gi00353 129415 000210_GCAT 266779 10690 637000160 4412 4744 1 3 NC_008254 NCBI, DOE Joint Genome Institute PNNL, DOE Joint Genome Institute DOE Unpublished July 11, 2006 Bruce D Bacteria Cyanobacteria Oscillatoriales Trichodesmium Trichodesmium erythraeum BACTERIAL Trichodesmium erythraeum IMS101 527924 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental None Marine Aerobe Filament-shaped Motile Mesophile USA 34.3 Public Gc00398 Gi00666 137926 000211_GCAT 203124 318 637000329 7750 5167 1 0 NC_008312 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Woods Hole Oceanographic Institute DOE Unpublished July 6, 2006 Bruce D Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Helicobacteraceae Helicobacter Helicobacter acinonychis BACTERIAL Helicobacter acinonychis Sheeba Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Feline Pathogen, Medical Gastric lesions Host Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile 37 USA 38.2 Public Gc00403 000212_GCAT 382638 17251 637000130 1553 1666 1 1 NC_008229 NCBI Penn State Univ Unpublished June 28, 2006 Schuster SC Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Rhodospirillaceae Rhodospirillum Rhodospirillum rubrum BACTERIAL Rhodospirillum rubrum ATCC 11170 53733 ATCC 11170 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Facultative Spiral-shaped Motile Lithotroph, Phototroph Mesophile 25 - 30 USA 65.4 Public Gc00396 Gi00724 4508 000213_GCAT 269796 58 637000241 4352 3987 1 1 NC_007643 NCBI, DOE Joint Genome Institute Univ of Wisconsin, DOE Joint Genome Institute DOE Unpublished February 9, 2006 Bruce D Bacteria Firmicutes Thermoanaerobacterales Clostridia Thermoanaerobacteraceae Moorella Moorella thermoacetica BACTERIAL Moorella thermoacetica ATCC39073 111654 ATCC 39073 Genome FIRMICUTES Complete Complete and Published Biotechnological, Environmental None Fresh water, Ponds Anaerobe Sporulating Thermophile 58 Bottom of stagnant ponds USA 55.8 Public Gc00397 Gi00376 143793 000214_GCAT 264732 10648 637000167 2628 2669 1 0 NC_007644 NCBI, DOE Joint Genome Institute Univ of Nebraska, DOE Joint Genome Institute DOE Environ Microbiol. Epub February 23, 2006 Ragsdale S Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas atlantica BACTERIAL Pseudoalteromonas atlantica T6c Sanger 9.6x 493548 ATCC BAA-1087 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental None Fresh water Aerobe Rod-shaped Motile Nonsporulating Mesophile Lesions on crabs with shell disease USA 44 Public Gc00395 Gi00952 160309 000215_GCAT 342610 13454 637000216 5187 4474 1 0 NC_008228 NCBI DOE Joint Genome Institute DOE Unpublished June 14, 2006 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus delbrueckii BACTERIAL Lactobacillus delbrueckii bulgaricus ATCC 11842 13536 ATCC 11842 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production None Intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile Bulgarian yogurt in 1919 France 49.7 Public Gc00394 Gi00312 160034 000216_GCAT 390333 16871 637000139 1864 2243 1 0 NC_008054 NCBI, Genoscope INRA, Genoscope Danone Vitapole PNAS 103, 9274-9 June 14, 2006 van de Guchte M Bacteria Actinobacteria Rubrobacterales Actinobacteria (class) Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus BACTERIAL Rubrobacter xylanophilus DSM 9941 154720 DSM 9941 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Nonmotile Nonsporulating Heterotroph Thermophile 60 Thermally polluted industrial runoff in the United Kingdom USA 70.4 Public Gc00393 Gi00518 160679 000217_GCAT 266117 10670 637000248 3225 3330 1 0 NC_008148 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Louisiana State Univ DOE Unpublished June 9, 2006 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium sp. MCS BACTERIAL Mycobacterium sp MCS Sanger 11x Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Creosote-contaminated soil, Soil Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile Creosote-contaminated soil from the Champion International Superfund site in Libby Montana USA 68 Public Gc00392 Gi01023 160932 000218_GCAT 164756 15762 637000171 5705 5752 1 1 NC_008146 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 9, 2006 Bruce D Bacteria Proteobacteria Myxococcales Deltaproteobacteria Myxococcaceae Myxococcus Myxococcus xanthus BACTERIAL Myxococcus xanthus DK 1622 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological None Soil Obligate aerobe Rod-shaped Motile Sporulating Chemoorganotroph Mesophile 20 - 30 USA 68.9 Public Gc00391 Gi00395 355323 000219_GCAT 246197 1421 637000186 9139 7460 1 0 NC_008095 NCBI Monsanto, J. Craig Venter Institute NSF Unpublished June 7, 2006 Nierman WC Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori HPAG1 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Human Pathogen, Medical Gastric inflammation, Ulcer Host, Human stomach Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile 37 Swedish patient with chronic atrophic gastritis Sweden 39 Public Gc00390 000220_GCAT 357544 16183 637000133 1596 1628 1 1 NC_008086 NCBI Washington Univ PNAS 103, 9999-10004 June 6, 2006 Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia AU 1054 Sanger Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Pneumonia Host Facultative Rod-shaped Motile Mesophile Blood of a patient with CF USA 67 Public Gc00389 Gi00805 137522 000221_GCAT 331271 13919 637000046 7278 6718 3 0 NC_008062, NC_008061, NC_008060 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 1, 2006 Bruce D Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Antiqua Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bubonic and Pneumonic plague Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Soil sample from the Republic of Congo USA 47.7 Public Gc00388 159714 000222_GCAT 360102 16645 637000350 4720 4561 1 3 NC_008150 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute J. Bacteriology 188, 4453-63 June 1, 2006 Andersen GL Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Nepal516 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bubonic and Pneumonic plague Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Soil sample from Nepal USA 47 Public Gc00387 160633 000223_GCAT 377628 16646 637000353 4534 4298 1 2 NC_008149 NCBI DOE Joint Genome Institute J. Bacteriology 188, 4453-63 June 1, 2006 Andersen GL Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Silicibacter Silicibacter sp. TM1040 BACTERIAL Silicibacter sp. TM1040 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Environmental None Marine Aerobe Rod-shaped Motile Phototroph Mesophile culture of the dinoflagellate Pfiesteria piscicida CCMP1830 USA 60.4 Public Gc00386 Gi00515 159676 000224_GCAT 292414 13040 637000268 3200 4034 1 2 NC_008044 NCBI, DOE Joint Genome Institute, RoseoBase Univ of Georgia, DOE Joint Genome Institute DOE Unpublished May 22, 2006 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum 3841 viciae Legume Plants Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Biotechnological None Host, Root nodule Aerobe Rod-shaped Singles Motile Nonsporulating Mesophile 25 - 30 United Kingdom 63 Public Gc00385 Gi00504 3841 000225_GCAT 216596 344 639633055 5057 7346 1 6 NC_008380 NCBI, Sanger Institute, Univ of York Sanger Institute, Univ of York, Univ of East Anglia BBSRC Genome Biol. 7, R34 April 26, 2006 Parkhill J Bacteria Proteobacteria Sphingomonadales Alphaproteobacteria Sphingomonadaceae Sphingopyxis Sphingopyxis alaskensis BACTERIAL Sphingopyxis alaskensis RB2256 66673 CCUG 45028, CIP 106977, DSM 13593, LMG 18877 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Environmental None Marine Aerobe Heterotroph, Oligotroph Mesophile Resurrection Bay in the Gulf of Alaska USA 65 Public Gc00384 Gi00564 42377 000226_GCAT 317655 13907 637000271 3345 3308 1 1 NC_008048 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished May 18, 2006 Bruce D Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas entomophila BACTERIAL Pseudomonas entomophila L48 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Insect Pathogen Cellular destruction Fresh water, Wastewater Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile France 64.2 Public Gc00383 Gi00823 112473 000227_GCAT 384676 16800 637000219 5888 5274 1 0 NC_008027 NCBI, Genoscope CNRS, Genoscope CNRG Nat Biotechnol 24, 673-9 May 11, 2006 Boccard F Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfovibrionaceae Lawsonia Lawsonia intracellularis BACTERIAL Lawsonia intracellularis PHE/MN1-00 681612 NCTC 12657 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Animal Pathogen, Medical Proliferative enteropathy Host, Intestinal microflora Facultative Rod-shaped Mesophile 37 USA 33 Public Gc00382 Gi00321 159002 000228_GCAT 363253 183 637000145 1457 1400 1 3 NC_008011 NCBI, Univ of Minnesota Univ of Minnesota USDA Unpublished May 4, 2006 Kapur V Bacteria Deinococcus-Thermus Deinococcales Deinococci Deinococcaceae Deinococcus Deinococcus geothermalis BACTERIAL Deinococcus geothermalis DSM11300 150388 DSM11300 Genome THERMI Complete Complete and Published Bioremediation, Environmental None Fresh water, Hot spring Aerobe Coccus-shaped Nonmotile Thermophile 47 Hot spring at Agnano in Naples Italy USA 66 Public Gc00381 Gi00191 130529 000229_GCAT 319795 13423 641228488 2467 3207 1 1 NC_008025 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, USUHS DOE PLoS ONE 2, e955 May 4, 2006 Daly MJ Bacteria Acidobacteria Acidobacteriales Acidobacteria (class) Acidobacteriaceae BACTERIAL Korebacter versatilis Ellin 345 Sanger 9x Genome ACIDOBACTERIA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water, Soil Aerobe Rod-shaped Nonmotile Nonsporulating Chemoorganotroph, Heterotroph, Oligotroph Mesophile soil of an Australian pasture USA 58.4 Public Gc00380 Gi01488 72400 000230_GCAT 204669 15771 637000001 5650 4882 1 0 NC_008009 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Appl Environ Microbiol. Epub May 4, 2006 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS9429 M12 692592 ATCC BAA-1315 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Rheumatic fever Host, Nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile USA 38 Public Gc00379 Gi01506 158186 000231_GCAT 370551 16363 637000300 1836 1970 1 0 NC_008021 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Musser JM Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS10270 M2 692416 ATCC BAA-1063 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Rheumatic fever Host, Nasopharyngeal microflora Facultative Coccus-shaped Chains, Pairs Nonmotile Nonsporulating Mesophile USA 38 Public Gc00378 Gi01502 158517 000232_GCAT 370552 16364 637000292 1928 2070 1 0 NC_008022 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Musser JM Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS2096 M12 692421 ATCC BAA-1065 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Rheumatic fever Host, Nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile USA 38 Public Gc00377 Gi01504 157093 000233_GCAT 370553 16365 637000295 1860 1981 1 0 NC_008023 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Musser JM Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS10750 M4 692424 ATCC BAA-1066 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Rheumatic fever Host, Nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile USA 38 Public Gc00376 Gi01503 158495 000234_GCAT 370554 16366 637000294 1937 2062 1 0 NC_008024 NCBI RML-NIAID, Integrated Genomics Inc NIH PNAS 103, 7059-64 May 4, 2006 Musser JM Bacteria Proteobacteria Gammaproteobacteria Candidatus Baumannia cicadellinicola BACTERIAL Baumannia cicadellinicola Hc Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Endosymbiont, Host, Insect endosymbiont Mesophile Red portion of the bacteriome from Homalodisca coagulata adults collected in a lemon orchard USA 33.2 Public Gc00375 Gi00076 157716 000235_GCAT 374463 12513 637000029 686 695 1 0 NC_007984 NCBI J. Craig Venter Institute PLoS Biology 4, e188 April 27, 2006 Eisen J Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Cupriavidus Cupriavidus metallidurans BACTERIAL Cupriavidus metallidurans CH34 124760 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Environmental None Fresh water, Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile 30 USA 63 Public Gc00374 Gi00501 158578 000236_GCAT 266264 250 637000230 6508 6500 2 2 NC_007974, NC_007973 NCBI, DOE Joint Genome Institute, BNL Brookhaven Natl Lab, DOE Joint Genome Institute DOE Unpublished April 27, 2006 Bruce D Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Psychrobacter Psychrobacter cryohalolentis BACTERIAL Psychrobacter cryohalolentis K5 Sanger 11x 690313 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Fresh water Aerobe Rod-shaped Nonmotile Psychrophile Halotolerant Saline liquid found 11-24 m below the surface within a forty thousand-year-old Siberian permafrost at the Kolyma-Indigirka lowland in Siberia USA 42.3 Public Gc00373 Gi00809 157085 000237_GCAT 335284 13920 637000227 3059 2641 1 1 NC_007969 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Michigan State Univ DOE Unpublished April 18, 2006 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Nitrobacter Nitrobacter hamburgensis BACTERIAL Nitrobacter hamburgensis X14 303234 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Motile Chemolithoautotroph, Lithoautotroph Mesophile Soil USA 61 Public Gc00372 Gi00405 156705 000238_GCAT 323097 13473 637000192 4406 4799 1 3 NC_007964 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Oregon State Univ DOE Appl Environ Microbiol. Epub April 11, 2006 Bruce D Bacteria Proteobacteria Oceanospirillales Gammaproteobacteria Halomonadaceae Chromohalobacter Chromohalobacter salexigens BACTERIAL Chromohalobacter salexigens 1H11, DSM 3043 Sanger 12x 158279 DSM 3043 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water, Solar saltern Facultative Rod-shaped Motile Nonsporulating Mesophile 37 Halophile "Solar salt facility, Netherlands Antilles" USA 63 Public Gc00371 Gi00151 156938 000239_GCAT 290398 12636 637000075 3696 3493 1 0 NC_007963 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Hiram College, Purdue Univ DOE Unpublished April 11, 2006 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisB5 Sanger 11x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water, Soil Facultative Rod-shaped Singles Motile Phototroph Mesophile 25 - 30 freshwater sediment samples from De Biesbosch and Haren, the Netherlands USA 64 Public Gc00370 Gi00958 156594 000240_GCAT 316057 15749 637000238 4892 4549 1 0 NC_007958 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Washington DOE PNAS Epub April 10, 2006 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella denitrificans BACTERIAL Shewanella denitrificans OS217 Sanger 15x 303781 DSM 15013, LMG 21692 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile 20 - 25 Gotland Deep an anoxic basin in the central Baltic Sea in 1986 from a depth of 120-130m USA 45.1 Public Gc00369 Gi00552 130432 000241_GCAT 318161 13390 637000256 4545 4023 1 0 NC_007954 NCBI, DOE Joint Genome Institute PNNL, DOE Joint Genome Institute DOE Unpublished April 10, 2006 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Polaromonas Polaromonas sp. JS666 BACTERIAL Polaromonas sp. JS666 Sanger 12x 352284 ATCC BAA-500 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Environmental None Fresh water Aerobe Rod-shaped Nonmotile Mesophile 20 Sediment contaminated with cis-dichloroethane USA 62.5 Public Gc00368 Gi00710 131237 000242_GCAT 296591 13121 637000208 5200 5673 1 2 NC_007948 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Cornell Univ DOE Appl Environ Microbiology 74, 6405-16 April 10, 2006 Bruce D Bacteria Proteobacteria Methylophilales Betaproteobacteria Methylophilaceae Methylobacillus Methylobacillus flagellatus BACTERIAL Methylobacillus flagellatus KT Sanger 14x 302997 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Biotechnological, Energy production, Environmental, Wastewater treatment None Sludge Aerobe Rod-shaped Motile Mesophile 30 - 42 Activated sludge found at the wastewater treatment plant in Moscow Russia USA 55.8 Public Gc00367 Gi00368 156646 000243_GCAT 265072 10647 637000165 2971 2874 1 0 NC_007947 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Washington DOE J Bacteriology 189, 4020-7 April 10, 2006 Bruce D Archaea Euryarchaeota Methanosarcinales Methanomicrobia Methanosarcinaceae Methanococcoides Methanococcoides burtonii ARCHAEAL Methanococcoides burtonii DSM6242 Sanger 19x 159855 DSM 6242 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Carbon cycle, Energy production None Antarctic, Fresh water Anaerobe Motile Nonsporulating Lithotroph Psychrophile 1.7 - 29.5 Anoxic hypolimnion of Ace Lake Antarctica USA 40.8 Public Gc00366 Gi00354 156789 000244_GCAT 259564 9634 637000161 2575 2555 1 0 NC_007955 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute, UMBI DOE ISME Journal Epub April 10, 2006 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia xenovorans BACTERIAL Burkholderia xenovorans (fungorum) LB400 374301 NRRL B-18064 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Bioremediation, Environmental, Human Pathogen, Medical, Plant Pathogen Opportunistic infection Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile 30 PCB-containing landfill near in upper New York USA 62 Public Gc00365 Gi00107 156851 000245_GCAT 266265 254 637000053 9279 9119 3 0 NC_007952 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Michigan State Univ DOE PNAS 103, 15280-7 April 10, 2006 Aerts A Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli UTI89 Sanger 8x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Gut Microbiome Initiative (HGMI), Human Pathogen, Medical Cystitis, Diarrhea Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile Woman with uncomplicated cystitis USA 50 Public Gc00364 156960 000246_GCAT 364106 16259 637000109 5065 5432 1 1 NC_007946 NCBI Washington Univ PNAS 103, 5977-82 April 5, 2006 Gordon J Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia bellii BACTERIAL Rickettsia bellii RML369-C 303683 Dermacentor variabilis Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural None Endosymbiont, Host, Insect endosymbiont Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile Embryonated chicken eggs from a triturated pool of unfed adult Dermacentor variabilis ticks collected from vegetation near Fayetteville Arkansas USA in 1966 France 31.6 Public Gc00363 Gi01127 000247_GCAT 336407 13996 637000242 1522 1488 1 0 NC_007940 NCBI CNRS CNRG PLoS Genetics 2, e76 April 5, 2006 Raoult D Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus salivarius BACTERIAL Lactobacillus salivarius salivarius UCC118 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Host, Intestinal microflora Facultative Rod-shaped Nonmotile Nonsporulating Mesophile Human gastrointestinal tract Ireland 32 Public Gc00362 Gi01470 000248_GCAT 362948 13280 637000143 1827 2186 1 3 NC_007929 NCBI Univ College Cork PNAS 103, 6718-23 April 3, 2006 Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris BisB18 Sanger 10x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Hydrogen production None Fresh water, Soil Facultative Rod-shaped Singles Motile Phototroph Mesophile 25 - 30 freshwater sediment samples from De Biesbosch and Haren, the Netherlands USA 64 Public Gc00361 Gi00960 155628 000249_GCAT 316056 15750 637000237 5513 5072 1 0 NC_007925 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE PNAS Epub March 21, 2006 Bruce D Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Alteromonadaceae Saccharophagus Saccharophagus degradans BACTERIAL Saccharophagus degradans 2-40 620898 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Biotechnological, Energy production, Environmental None Fresh water Aerobe Rod-shaped Motile Psychrotolerant Decaying Spartina alterniflora a salt marsh cord grass in the Chesapeake Bay USA 45 Public Gc00360 Gi00373 8406 000250_GCAT 203122 316 637000249 5057 4114 1 0 NC_007912 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Maryland DOE PLoS Genetics 4, :e1000087 March 17, 2006 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Rhodoferax Rhodoferax ferrireducens BACTERIAL Rhodoferax ferrireducens T118 Sanger 9x 303665 DSM 15236, ATCC BAA-621 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Generates electricity None Anaerobe Rod-shaped Psychrotolerant 25 Aquifer sediment collected at a depth of 18 feet USA 59.9 Public Gc00359 Gi01084 75345 000251_GCAT 338969 13908 637000235 4712 4606 1 1 NC_007908 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished March 10, 2006 Bruce D Bacteria Firmicutes Clostridiales Clostridia Peptococcaceae Desulfitobacterium Desulfitobacterium hafniense BACTERIAL Desulfitobacterium hafniense Y51 Genome FIRMICUTES Complete Complete and Published Bioremediation, Biotechnological None Soil Anaerobe Rod-shaped Chains, Pairs, Singles Motile Sporulating Mesophile Soil contaminated with tetrachloroethene in Japan Japan 47.4 Public Gc00358 Gi00193 46485 000252_GCAT 138119 16639 637000093 5727 5214 1 0 NC_007907 NCBI Kyushu Univ, RITE J Bacteriol 188, 2262-74 March 10, 2006 Yukawa H Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydophila Chlamydophila felis BACTERIAL Chlamydophila felis Fe/C-56 Genome CHLAMYDIAE Complete Complete and Published Animal Pathogen, Feline Pathogen, Medical Bronchitis, Pharyngitis, Pneumonia, Respiratory infection, Rhinitis Host Rod-shaped Nonmotile Mesophile 37 Japan 39 Public Gc00357 Gi00142 155301 000253_GCAT 264202 370 637000067 1166 1095 1 1 NC_007899 NCBI Yamaguchi Univ, Kitasato Univ JSPS DNA Res 13, 15-23 March 10, 2006 Hattori M Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis holarctica LVS Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Tularemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile Live vaccine strain was created in the 1960's in the USA USA 32.2 Public Gc00356 Gi00254 000254_GCAT 376619 16421 637000111 1895 2028 1 0 NC_007880 NCBI, LLNL Lawrence Livermore National Lab, CDC Unpublished March 3, 2006 Garcia E Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- W3110 120208 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Medical None Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 Japan 50.8 Public Gc00355 Gi00241 324847 000255_GCAT 316407 16351 637000110 4646 4651 1 0 AC_000091 NCBI, NARA NARA Unpublished March 1, 2006 Mori H Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Jannaschia Jannaschia sp. CCS1 BACTERIAL Jannaschia sp. CCS1 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Marine Obligate aerobe Rod-shaped Nonmotile Nonsporulating Heterotroph, Phototroph Mesophile 30 Water sample taken from the North Sea USA 62 Public Gc00354 Gi00785 153653 000256_GCAT 290400 12733 637000137 4317 4381 1 1 NC_007802 NCBI, DOE Joint Genome Institute, RoseoBase DOE Joint Genome Institute DOE Unpublished March 1, 2006 Bruce D Archaea Euryarchaeota Methanomicrobiales Methanomicrobia Methanospirillaceae Methanospirillum Methanospirillum hungatei ARCHAEAL Methanospirillum hungateii JF-1 Sanger 12x 157033 DSM 864 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Carbon cycle, Energy production None Mud Anaerobe Motile Nonsporulating Lithotroph Mesophile 37 Sewage sludge USA 45.1 Public Gc00350 Gi00366 97855 000257_GCAT 323259 13015 637000164 3544 3370 1 0 NC_007796 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute DOE Unpublished February 21, 2006 Bruce D Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Neorickettsia Neorickettsia sennetsu BACTERIAL Neorickettsia sennetsu Miyayama 621312 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Sennetsu fever Host Aerobe Rod-shaped Mesophile 1953 in Japan causing Sennetsu fever USA 41.1 Public Gc00352 Gi00403 153370 000258_GCAT 222891 357 637000191 859 1009 1 0 NC_007798 NCBI, Ohio State Univ Ohio State Univ, J. Craig Venter Institute Ohio State Univ, NIH-NIAID PLoS Genetics 2, E21 February 21, 2006 Rikihisa Y Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Anaplasma Anaplasma phagocytophilum BACTERIAL Anaplasma phagocytophilum HZ Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Anaplasmosis Host Aerobe Coccus-shaped Mesophile 37 Patient in New York in 1995 USA 41.6 Public Gc00351 Gi00029 156880 000259_GCAT 212042 336 637000009 1471 1373 1 0 NC_007797 NCBI, Ohio State Univ Ohio State Univ, J. Craig Venter Institute NIH PLoS Genetics 2, E21 February 21, 2006 Rikihisa Y Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Ehrlichia Ehrlichia chaffeensis BACTERIAL Ehrlichia chaffeensis Arkansas 302444 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Ehrlichiosis, Human monocytic ehrlichiosis Host Rod-shaped Mesophile Patient on an army base in Arkansas in 1990 USA 30.1 Public Gc00353 Gi00214 19195 000260_GCAT 205920 325 637000098 1176 1197 1 0 NC_007799 NCBI, Microgen Ohio State Univ, J. Craig Venter Institute NIH-NIAID PLoS Genetics 2, E21 February 21, 2006 Rikihisa Y Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus NCTC 8325 71249 NCTC 8325 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Staphylococcal scarlet fever, Toxic-shock syndrome Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 USA 32.9 Public Gc00349 Gi00596 156092 000261_GCAT 93061 237 637000279 2969 2971 1 0 NC_007795 NCBI, Univ of Oklahoma, Microgen Univ of Oklahoma NIH-NIAID, MGRI Unpublished February 18, 2006 Iandolo JJ Bacteria Proteobacteria Sphingomonadales Alphaproteobacteria Sphingomonadaceae Novosphingobium Novosphingobium aromaticivorans BACTERIAL Novosphingobium aromaticivorans DSM 12444 (F199) 44778 DSM 12444 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Biotechnological, Human Pathogen, Medical Death of coral reefs Fresh water, Host, Soil Obligate aerobe Rod-shaped Motile Mesophile 410m depth from a borehole sample that was drilled at the Savannah River Site in South Carolina USA 65.2 Public Gc00348 Gi00562 152367 000262_GCAT 279238 204 640427126 3561 4097 1 2 NC_007794 NCBI, DOE Joint Genome Institute PNNL, DOE Joint Genome Institute DOE Unpublished February 10, 2006 Bruce D Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA USA300, FPR3757 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Pneumonia, Septicemia Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 USA 32.8 Public Gc00347 161022 000263_GCAT 367830 16313 637000280 2872 2706 1 3 NC_007793 NCBI UCSF Lancet 367, 731-9 February 10, 2006 Diep BA Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris HaA2 Sanger 11x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Hydrogen production None Fresh water, Soil Facultative Rod-shaped Singles Motile Phototroph Mesophile 25 - 30 Haren USA 66 Public Gc00346 Gi00959 145418 000264_GCAT 316058 15747 637000240 5331 4825 1 0 NC_007778 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished February 9, 2006 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Frankiaceae Frankia Frankia sp. CcI3 BACTERIAL Frankia sp CcI3 Sanger 13x HFP020203, HFPCcI3 Casuarina cunninghamiana Genome ACTINOBACTERIA Complete Complete and Published Agricultural, Biotechnological None Plant symbiont, Soil Aerobe Filament-shaped Nonmotile Sporulating Chemoorganotroph Mesophile Root nodules of Casuarina cunninghamiana in 1983 at Harvard Forest USA 70.1 Public Gc00345 Gi00258 151820 000265_GCAT 106370 13963 637000116 5433 4670 1 0 NC_007777 NCBI, FrankiaGenomes, DOE Joint Genome Institute LBNL, DOE Joint Genome Institute, Univ of New Hampshire, Univ of Connecticut NSF Genome Res 17, 7-15 February 7, 2006 Benson DR Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp JA-2-3B'a(2-13) Genome CYANOBACTERIA Complete Complete and Published Environmental, Ocean carbon cycle None Fresh water, Hot spring Facultative Coccus-shaped Motile Photoautotroph, Photosynthetic Thermophile Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park USA 58.5 Public Gc00344 Gi00935 147538 000266_GCAT 321332 16252 637000312 3046 2944 1 0 NC_007775 NCBI J. Craig Venter Institute Unpublished February 6, 2006 Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp JA-3-3Ab Genome CYANOBACTERIA Complete Complete and Published Environmental, Ocean carbon cycle None Fresh water, Hot spring Facultative Coccus-shaped Motile Photoautotroph, Photosynthetic Thermophile Top 2mm of microbial mat samples from Octopus Spring Yellowstone National Park USA 60.2 Public Gc00343 Gi00936 139842 000267_GCAT 321327 16251 637000313 2932 2897 1 0 NC_007776 NCBI J. Craig Venter Institute Unpublished February 6, 2006 Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Rhizobium Rhizobium etli BACTERIAL Rhizobium etli CFN42 121591 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Biotechnological None Host, Root nodule Aerobe Rod-shaped Singles Motile Nonsporulating Mesophile Mexico 61.3 Public Gc00342 Gi00503 203181 000268_GCAT 347834 13932 640427137 4381 6089 1 6 NC_007761 NCBI, UNAM UNAM Unpublished February 1, 2006 Brom S Bacteria Proteobacteria Syntrophobacterales Deltaproteobacteria Syntrophaceae Syntrophus Syntrophus aciditrophicus BACTERIAL Syntrophus aciditrophicus SB 304023 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological, Global carbon cycle None Sludge Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 35 Sludge from a sewage treatment plant in Norman Oklahoma USA 51.5 Public Gc00341 Gi00645 145355 000269_GCAT 56780 16258 637000317 3179 3221 1 0 NC_007759 NCBI UCLA, Integrated Genomics Inc, Univ of Oklahoma NSF PNAS 104, 7600-5 January 27, 2006 Gunsalus RP Bacteria Proteobacteria Myxococcales Deltaproteobacteria Myxococcaceae Anaeromyxobacter Anaeromyxobacter dehalogenans BACTERIAL Anaeromyxobacter dehalogenans 2CP-C Sanger 11x 355535 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Environmental None Soil Anaerobe Rod-shaped Motile Sporulating Heterotroph Mesophile 30 USA 74.9 Public Gc00340 Gi00026 148510 000270_GCAT 290397 12634 637000007 5013 4474 1 0 NC_007760 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE PLoS ONE 3(5):e2103 January 27, 2006 Lvffler FE Bacteria Proteobacteria Sphingomonadales Alphaproteobacteria Erythrobacteraceae Erythrobacter Erythrobacter litoralis BACTERIAL Erythrobacter litoralis HTCC2594 HTCC2594 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Environmental, Marine Microbial Initiative (MMI) None Marine Aerobe Rod-shaped Motile Nonsporulating Phototroph Mesophile Sargasso Sea at a depth of 10m USA 63.1 Public Gc00339 Gi00840 000271_GCAT 314225 13480 637000103 3011 3102 1 NC_007722 NCBI, JCVI, Oregon State Univ Oregon State Univ, J. Craig Venter Institute Moore Foundation J Bacteriology Epub January 11, 2006 Giovannoni SJ Eukaryota Ascomycota Eurotiales Eurotiomycetes Trichocomaceae Aspergillus Aspergillus oryzae EUKARYAL Aspergillus oryzae RIB40 9x 491981 Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Biotechnological, Fermentation, Food industry, Protein production None Filament-shaped Mesophile Japan Public Gc00338 Gi00043 000272_GCAT 510516 20809 37000 12074 8 0 NCBI, NITE NITE Nature 438, 1157-61` December 22, 2005 Machida, M Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Sodalis Sodalis glossinidius BACTERIAL Sodalis glossinidius morsitans Glossina sp Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Evolutionary None Host Microaerophilic Rod-shaped Nonmotile Nonsporulating Mesophile 25 USA 54.7 Public Gc00337 146613 000273_GCAT 343509 16309 637000270 4171 2700 1 3 NC_007712 NCBI Kitasato Univ USDA, MEXT Genome Res. 6, 149-56 January 18, 2006 Hattori M Bacteria Tenericutes Acholeplasmatales Mollicutes Acholeplasmataceae Candidatus Phytoplasma Aster yellows witches'-broom phytoplasma BACTERIAL Candidatus Phytoplasma aster yellows witches'-broom AY-WB Genome FIRMICUTES Complete Complete and Published Agricultural, Plant Pathogen Aster yellows, Witches' Broom Host Aerobe Sphere-shaped Mesophile USA 26.9 Public Gc00336 Gi00453 146861 000274_GCAT 322098 13478 637000011 706 766 1 4 NC_007716 NCBI, Ohio State Univ Ohio State Univ, Integrated Genomics Inc USDA J. Bacteriology 188, 3682-3696 January 18, 2006 Hogenhout SA Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae MAFF 311018 oryzae 373786 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Leaf blight, Rice blight Host Aerobe Rod-shaped Motile Mesophile Japan 63.7 Public Gc00335 Gi00695 147525 000275_GCAT 342109 16297 637000347 4940 4437 1 0 NC_007705 NCBI NIAS, Japan JARQ 39, 275-287 January 9, 2006 Ochiai H Archaea Euryarchaeota Methanobacteriales Methanobacteria Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae ARCHAEAL Methanosphaera stadtmanae DSM 3091 158297 DSM 3091, ATCC 43021 Genome EURYARCHAEOTA-METHANOBACTERIA Complete Complete and Published Biotechnological, Energy production None Host, Intestinal microflora Anaerobe Sphere-shaped Nonmotile Lithotroph Mesophile 36 - 40 Human feces Germany 27.6 Public Gc00334 Gi00365 150471 000276_GCAT 339860 15579 637000163 1767 1602 1 0 NC_007681 NCBI, Integr8 Goettingen Genomics Laboratory, Max Planck Institute J Bacteriology 188, 642-58 January 5, 2006 Thauer R Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia thailandensis BACTERIAL Burkholderia thailandensis E264 125454 ATCC 700388 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural None Soil Aerobe Rod-shaped Motile Mesophile 25 - 42 Rice field sample in Thailand USA 67 Public Gc00333 Gi00111 7237 000277_GCAT 271848 10774 637000052 6723 5783 2 0 NC_007651, NC_007650 NCBI J. Craig Venter Institute NIH-NIAID BMC Genomics 6, 174 December 15, 2005 DeShazer D Bacteria Proteobacteria Oceanospirillales Gammaproteobacteria Hahellaceae Hahella Hahella chejuensis BACTERIAL Hahella chejuensis KCTC 2396 278562 KCTC 2396 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Algicidal, Biotechnological None Fresh water Aerobe Rod-shaped Motile Heterotroph Mesophile Halophile "Marine sediment from Cheju Island, Republic of Korea" Korea 53.9 Public Gc00332 Gi00288 24515 000278_GCAT 349521 16064 637000128 7215 6877 1 0 NC_007645 NCBI, GEM KRIBB MOST NAR 33, 7066-7073 December 14, 2005 Kim JF Bacteria Bacteroidetes Sphingobacteriales Sphingobacteria Salinibacter Salinibacter ruber BACTERIAL Salinibacter ruber M31 303749 DSM 13855, CECT 5946 Genome BACTEROIDETES Complete Complete and Published Biotechnological None Ponds Aerobe Rod-shaped Motile Heterotroph Mesophile 37 - 47 Halophile Saltern crystallizer ponds in Spain USA 66.2 Public Gc00331 28419 000279_GCAT 309807 16159 637000250 3551 2938 1 1 NC_007677 NCBI J. Craig Venter Institute NSF PNAS 102, 18147-52 December 5, 2005 Nelson KE Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Rhodospirillaceae Magnetospirillum Magnetospirillum magneticum BACTERIAL Magnetospirillum magneticum AMB-1 117768 ATCC 700264 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Fresh water, Host Aerobe Spiral-shaped Motile Heterotroph Mesophile Pond water in Tokyo Japan USA 65.1 Public Gc00330 4525 000280_GCAT 342108 16217 637000155 4967 4619 1 0 NC_007626 NCBI Tokyo Univ of Agriculture and Technology MEXT DNA Res. 12, 157-66 December 7, 2005 Matsunaga T Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma capricolum BACTERIAL Mycoplasma capricolum capricolum California kid ATCC 27343 105235 ATCC 27343, NCTC 10154 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Goat Pathogen, Medical Arthritis, Caprine mycoplasma, Septicemia Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 USA 23.8 Public Gc00329 15744 000281_GCAT 340047 16208 637000174 1010 902 1 0 NC_007633 NCBI, CMR J. Craig Venter Institute Unpublished December 6, 2005 Glass J Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Helicobacteraceae Sulfurimonas Sulfurimonas denitrificans BACTERIAL Sulfurimonas denitrificans ATCC 33889 109901 ATCC 33889, DSM 1251 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Biotechnological None Marine, Mud Anaerobe Spiral-shaped Singles Nonmotile Nonsporulating Mesophile 26 Estuarine mud in Netherlands USA 34.5 Public Gc00328 11108 000282_GCAT 326298 13019 637000326 2201 2219 1 0 NC_007575 NCBI DOE Joint Genome Institute DOE Appl Environ Microbiol. 74, 1145-56 November 1, 2005 Sievert SM Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus RF122 bovine Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Mastitis, Nosocomial infection Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 USA 32.8 Public Gc00327 150529 000283_GCAT 273036 63 637000272 2515 2671 1 0 NC_007622 NCBI, Univ of Minnesota Univ of Minnesota USDA/CSREES Unpublished November 30, 2005 Kapur V Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella abortus BACTERIAL Brucella melitensis abortus 2308 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Brucellosis Host Aerobe Rod-shaped Nonmotile Mesophile Standard laboratory strain USA 57 Public Gc00326 141718 000284_GCAT 359391 16203 637000041 3277 3111 2 0 NC_007618, NC_007624 NCBI, LLNL Lawrence Livermore National Lab, DOE Joint Genome Institute, Univ Nacional de San Martin Infect Immunity 73, 8353-61 November 22, 2005 Bruce D Bacteria Proteobacteria Nitrosomonadales Betaproteobacteria Nitrosomonadaceae Nitrosospira Nitrosospira multiformis BACTERIAL Nitrosospira multiformis ATCC 25196 103735 ATCC 25196 Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological None Soil Aerobe Motile Autotroph, Lithotroph Mesophile USA 53.9 Public Gc00325 141903 000285_GCAT 323848 13912 637000197 3184 2879 1 3 NC_007614 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Oregon State Univ DOE Appl Environ Microbiol. Epub November 15, 2005 Bruce D Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Shigella Shigella dysenteriae BACTERIAL Shigella dysenteriae Sd197 1 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Dysenteria, Food poisoning Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 Epidemic in China in 1950s China 51.2 Public Gc00324 145028 000286_GCAT 300267 13145 640427142 4369 4855 1 2 CP000034 ShiBASE Microbial Genome Center of ChMPH MOST NAR 33, 6445-58 November 7, 2005 Jin Q Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Shigella Shigella sonnei BACTERIAL Shigella sonnei Ss046 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Dysenteria, Food poisoning Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 Epidemic in China in 1950s China 51 Public Gc00323 138945 000287_GCAT 300269 13151 640427143 5039 4782 1 4 NC_007384 NCBI, ShiBASE Microbial Genome Center of ChMPH MOST NAR 33, 6445-58 November 7, 2005 Jin Q Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Shigella Shigella boydii BACTERIAL Shigella boydii Sb227 4 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Dysenteria, Food poisoning Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile Epidemic in China in 1950s China 51.2 Public Gc00322 141716 000288_GCAT 300268 13146 637000261 4519 4589 1 1 NC_007613 NCBI, ShiBASE Microbial Genome Center of ChMPH MOST NAR 33, 6445-58 November 9, 2005 Jin Q Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas savastanoi BACTERIAL Pseudomonas syringae phaseolicola 1448A / Race 6 phaseolicola 493507 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Halo blight, Plant rot Plants Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile USA 58 Public Gc00321 137932 000289_GCAT 264730 12416 637000223 5928 5511 1 2 NC_005773 NCBI, Cornell Univ Cornell Univ, J. Craig Venter Institute NSF J Bacteriology 187, 6488-98 October 5, 2005 Lindeberg M Eukaryota Kinetoplastida Trypanosomatidae Leishmania Leishmania major EUKARYAL Leishmania major Friedlin Genome PROTISTS-EUGLENOZOA Quality Draft Complete and Published Animal Pathogen, Human Pathogen, Medical Leishmaniasis, Skin ulcer, Visceral disease Mesophile United Kingdom 63 Public Gc00320 000290_GCAT 347515 10724 640281016 32800 1579 36 0 Chromosomes NCBI, Sanger Institute, GeneDB, Leishmania Genome Network Sanger Institute, EULEISH, SBRI BWF Science 309, 436-42 July 15, 2005 Stuart K Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus elongatus BACTERIAL Synechococcus elongatus PCC7942 109929 PCC 7942 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Facultative Coccus-shaped Motile Photoautotroph, Photosynthetic Mesophile USA 55.5 Public Gc00319 3303 000291_GCAT 1140 10645 637000308 2695 2765 1 3 NC_007604 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Texas A&M Univ DOE Unpublished November 8, 2005 Bruce D Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus sakei BACTERIAL Lactobacillus sakei sakei 23K Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production None Fresh meat, Intestinal microflora, Oral microflora, Vagina microflora Facultative Rod-shaped Nonmotile Mesophile French sausage France 41.3 Public Gc00318 144583 000292_GCAT 314315 13435 637000142 1884 1984 1 0 NC_007576 NCBI, INRA INRA Nat. Biotechnology 23, 1527-33 November 10, 2005 Zagorec M Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9312 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Oval-shaped Nonmotile Photosynthetic Mesophile Gulf Stream of North Atlantic Ocean USA 31.2 Public Gc00317 3377 000293_GCAT 74546 13910 637000210 1709 1897 1 0 NC_007577 NCBI, DOE Joint Genome Institute MIT, DOE Joint Genome Institute DOE Unpublished November 3, 2005 Chisholm S Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Piscirickettsiaceae Thiomicrospira Thiomicrospira crunogena BACTERIAL Thiomicrospira crunogena XCL-2 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Deep sea, Marine Anaerobe Spiral-shaped Motile Chemoautotroph Mesophile 28 - 32 Deep-sea hydrothermal vent USA 43.1 Public Gc00316 142557 000294_GCAT 317025 13018 637000325 2427 2307 1 0 NC_007520 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of South Florida DOE PLos Biology 4, e383 November 1, 2005 Bruce D Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans BACTERIAL Desulfovibrio desulfuricans G20 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Environmental None Anaerobe Rod-shaped Singles Motile Nonsporulating Mesophile 25 - 40 Oil well corrosion site USA 57.8 Public Gc00315 144439 000295_GCAT 207559 329 637000095 3730 3943 1 0 NC_007519 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Missouri DOE Unpublished October 31, 2005 Bruce D Bacteria Proteobacteria Desulfuromonadales Deltaproteobacteria Geobacteraceae Geobacter Geobacter metallireducens BACTERIAL Geobacter metallireducens GS-15 160621 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Environmental None Fresh water Anaerobe Rod-shaped Singles Motile Nonsporulating Chemolithotroph Mesophile 30 Potomac river downstream of Washington DC in 1987 USA 59.5 Public Gc00314 141204 000296_GCAT 269799 177 637000119 3997 3690 1 1 NC_007517 NCBI, Lovley Lab, DOE Joint Genome Institute, Geobacter.org DOE Joint Genome Institute, Univ of Massachusetts Amherst DOE BMC Microbiology 9, 109 October 28, 2005 Lovley DR Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CC9605 BACTERIAL Prochlorococcus sp. CC9605 (oligotrophic) Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Coccus-shaped Motile Nonsporulating Oligotroph, Photoautotroph, Photosynthetic Mesophile 51m depth of California coast on 1996 USA 59.2 Public Gc00313 84712 000297_GCAT 110662 13643 637000310 2510 2805 1 0 NC_007516 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 28, 2005 Bruce D Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chlorobium Chlorobium chlorochromatii BACTERIAL Chlorobium chlorochromatii CaD3 Genome CHLOROBI Complete Complete and Published Biotechnological None Chains, Singles Motile Phototroph Mesophile USA 44.3 Public Gc00312 141021 000298_GCAT 340177 13921 637000072 2572 2096 1 0 NC_007514 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Penn State Univ DOE Unpublished October 27, 2005 Bryant D Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus sp. CC9902 BACTERIAL Prochlorococcus sp. CC9902 (coastal) Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Coastal, Marine Coccus-shaped Motile Photoautotroph, Photosynthetic Mesophile 5m depth in California current on 1999 USA 54.2 Public Gc00311 144130 000299_GCAT 316279 13655 637000311 2234 2407 1 0 NC_007513 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 27, 2005 Bruce D Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Pelodictyon Pelodictyon luteolum BACTERIAL Pelodictyon luteolum DSM 273 156559 DSM 273 Genome CHLOROBI Complete Complete and Published Biotechnological None Fresh water, Hot spring, Mud Anaerobe Rod-shaped Singles Nonmotile Nonsporulating Photosynthetic, Phototroph Mesophile 25 Meromictic Lake Polden in Norway USA 57.3 Public Gc00310 143806 000300_GCAT 319225 13012 637000205 2364 2187 1 0 NC_007512 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 27, 2005 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia BACTERIAL Burkholderia cepacia 383 (R18194) 299650 ATCC 17760, LMG 6991, NCIB 9086 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Animal Pathogen, Biocontrol, Biodegradation of pollutants, Bioremediation, Environmental, Human Pathogen, Medical Chronic infection, Necrotizing Pneumonia Host, Rhizosphere Facultative Rod-shaped Motile Mesophile Forest soil in Trinidad in 1958 USA 66 Public Gc00309 141034 000301_GCAT 269483 10695 637000051 8676 7898 3 0 NC_007511, NC_007510, NC_007509 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished October 24, 2005 Tiedje J Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas euvesicatoria BACTERIAL Xanthomonas campestris vesicatoria 85-10 vesicatoria Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Bacterial spot Host Aerobe Rod-shaped Motile Mesophile 25 - 30 Germany 64.7 Public Gc00308 140985 000302_GCAT 316273 13649 637000345 5178 4849 1 4 NC_007508 NCBI, Bielefeld Univ, GenDB-Bielefeld Univ Bielefeld Univ BMBF J. Bacteriol 187, 7254-66 October 23, 2005 Puhler A Bacteria Firmicutes Thermoanaerobacterales Clostridia Thermoanaerobacteraceae Carboxydothermus Carboxydothermus hydrogenoformans BACTERIAL Carboxydothermus hydrogenoformans Z-2901 159585 DSM 6008 Genome FIRMICUTES Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water Anaerobe Chemolithotroph Hyperthermophile 78 "Hot swamp from Kunashir Island, Russia" USA 42 Public Gc00307 142594 000303_GCAT 246194 253 637000060 2401 2765 1 0 NC_007503 NCBI J. Craig Venter Institute, COMB DOE PLoS Genet. 25, e65 October 23, 2005 Bacteria Proteobacteria Desulfuromonadales Deltaproteobacteria Pelobacteraceae Pelobacter Pelobacter carbinolicus BACTERIAL Pelobacter carbinolicus DSM 2380 157960 DSM 2380 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological None Fresh water, Marine, Sludge Anaerobe Rod-shaped Mesophile USA 55.1 Public Gc00306 140970 000304_GCAT 338963 13337 637000204 3662 3271 1 0 NC_007498 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Massachusetts Amherst DOE Unpublished October 20, 2005 Bruce D Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens Pf0-1 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental None Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Agricultural loam soil in 1988 USA 60.5 Public Gc00305 140331 000305_GCAT 205922 12 637000221 6438 5852 1 0 NC_007492 NCBI, DOE Joint Genome Institute Tufts Univ, DOE Joint Genome Institute DOE Genome Biology 10(5):R51 October 11, 2005 Bruce D Bacteria Proteobacteria Chromatiales Gammaproteobacteria Chromatiaceae Nitrosococcus Nitrosococcus oceani BACTERIAL Nitrosococcus oceani C-107 268153 ATCC 19707 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Environmental None Marine Aerobe Motile Autotroph, Chemolithotroph Mesophile seawater, North Atlantic USA 50.3 Public Gc00304 140562 000306_GCAT 323261 13993 637000194 3521 3192 1 1 NC_007484 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Oregon State Univ DOE Appl Environ Microbiol 72, 6299-315 October 6, 2005 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei 1710b Genome PROTEOBACTERIA-BETA Complete Complete and Published Biothreat, Human Pathogen, Medical Bacteremia, Melioidosis, Pneumonia Soil Aerobe Rod-shaped Motile Mesophile USA 68 Public Gc00303 140245 000307_GCAT 320372 13954 637000049 8252 6493 2 0 NC_007435, NC_007434 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished October 3, 2005 Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae A909,ATCC BAA-1138 Ic Sanger 8x 125890 ATCC BAA-1138 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Meningitis, Pneumonia, Septicemia Host Facultative Coccus-shaped Chains, Pairs Nonmotile Nonsporulating Mesophile 37 USA 35.6 Public Gc00302 139850 000308_GCAT 205921 326 637000286 2127 2230 1 0 NC_007432 NCBI J. Craig Venter Institute NIH-NIAID PNAS 102, 13950-5 October 3, 2005 Rappuoli R Archaea Euryarchaeota Halobacteriales Halobacteria Halobacteriaceae Natronomonas Natronomonas pharaonis ARCHAEAL Natronomonas pharaonis DSM 2160, Gabara 111054 DSM 2160, ATCC 35678 Genome EURYARCHAEOTA-HALOBACTERIA Complete Complete and Published Biotechnological None Fresh water 8.5 Aerobe Phototroph Mesophile Halophile Lake Gabara Egypt Germany 63.4 Public Gc00301 140077 000309_GCAT 348780 15742 637000187 2595 2898 1 2 NC_007426 NCBI, Max Planck Institute, Integr8 Max Planck Institute Genome Res. 15, 1336-43 October 3, 2005 Oesterhelt D Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis HAR-13 A 621204 Genome CHLAMYDIAE Complete Complete and Published Human Pathogen, Medical Bronchitis, Pharyngitis, Pneumonia Host Rod-shaped Nonmotile Mesophile USA 41.3 Public Gc00300 3009 000310_GCAT 315277 13885 637000063 1044 1000 1 1 NC_007429 NCBI RML-NIAID, Integrated Genomics Inc Infect. Immun. 73, 6407-18 September 23, 2005 Bacteria Cyanobacteria Nostocales Nostocaceae Anabaena Anabaena variabilis BACTERIAL Anabaena variabilis ATCC 29413 Sanger 106830 ATCC 29413 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water, Soil Aerobe Filament-shaped Motile Heterotroph Mesophile USA 41.4 Public Gc00299 139853 000311_GCAT 240292 10642 637000006 6365 5776 1 3 NC_007413 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Missouri DOE Unpublished September 20, 2005 Thiel T Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Nitrobacter Nitrobacter winogradskyi BACTERIAL Nitrobacter winogradskyi Nb-255 104032 ATCC 25391 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Soil Facultative Rod-shaped Motile Lithotroph Mesophile USA 62.5 Public Gc00298 138868 000312_GCAT 323098 13474 637000193 3402 3201 1 0 NC_007406 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Appl Environ Microbiol 72, 2050-63 September 15, 2005 Bruce D Bacteria Proteobacteria Hydrogenophilales Betaproteobacteria Hydrogenophilaceae Thiobacillus Thiobacillus denitrificans BACTERIAL Thiobacillus denitrificans ATCC 25259 103822 ATCC 25259 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Environmental None Soil Facultative Rod-shaped Motile Chemolithotroph, Lithotroph Mesophile 28 - 32 Soil from Texas USA USA 66.1 Public Gc00297 138944 000313_GCAT 292415 13025 637000324 2909 2928 1 0 NC_007404 NCBI, DOE Joint Genome Institute Lawrence Livermore National Lab, DOE Joint Genome Institute DOE J Bacteriology 188, 1473-88 September 9, 2005 Bruce D Archaea Euryarchaeota Methanosarcinales Methanomicrobia Methanosarcinaceae Methanosarcina Methanosarcina barkeri ARCHAEAL Methanosarcina barkeri Fusaro 157017 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Carbon cycle, Energy production, Environmental None Mud Anaerobe Coccus-shaped Nonmotile Nonsporulating Lithotroph Mesophile 35 - 40 Mud samples from Lago del Fusaro Lake in Naples Italy USA 39.3 Public Gc00295 130989 000314_GCAT 269797 103 637000162 4837 3843 1 1 NC_007355 NCBI, DOE Joint Genome Institute, Integr8 DOE Joint Genome Institute, Univ of Maryland DOE J Bacteriol 188, 7922-31 August 22, 2005 Bruce D Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Ehrlichia Ehrlichia canis BACTERIAL Ehrlichia canis Jake Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Canine Pathogen, Medical Anemia, Ehrlichiosis Host Rod-shaped Mesophile 2-year old dog in North Carolina in 1989 USA 29 Public Gc00294 139026 000315_GCAT 269484 10694 637000097 1315 1024 1 0 NC_007354 NCBI, DOE Joint Genome Institute Univ of Texas, DOE Joint Genome Institute DOE J Bacteriology 188, 4015-4023 August 22, 2005 Mavromatis K Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides BACTERIAL Dehalococcoides sp CBDB1 Genome CHLOROFLEXI Complete Complete and Published Bioremediation, Biotechnological, Ecological, Environmental None Fresh water, Groundwater Anaerobe Motile Nonsporulating Chemolithotroph Mesophile Anoxic river sediment Germany 47 Public Gc00293 18518 000316_GCAT 255470 15604 637000090 1395 1517 1 0 AJ965256, NC_007356 NCBI, Max Planck Institute Max Planck Institute Nature Biotech. 23, 1269-73 August 19, 2005 Adrian L Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Cupriavidus Cupriavidus necator BACTERIAL Ralstonia eutropha JMP134 2875 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Environmental None Fresh water, Soil Aerobe Motile Chemolithoautotroph, Heterotroph Mesophile 30 USA 64.5 Public Gc00292 138517 000317_GCAT 264198 10646 637000229 6532 6646 2 2 NC_007348, NC_007347 NCBI, DOE Joint Genome Institute Univ Catolica de Chile, DOE Joint Genome Institute DOE Unpublished August 18, 2005 Bruce D Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus saprophyticus BACTERIAL Staphylococcus saprophyticus saprophyticus GTC 265 681611 ATCC 15305, NCTC 7292, DSM 20229 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Urinary infection Host, Human skin Aerobe Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile Human urine specimen Japan 33.2 Public Gc00291 138683 000318_GCAT 342451 15596 637000284 2516 2638 1 2 NC_007350 NCBI Kitasato Univ PNAS 102, 13272-7 August 12, 2005 Hattori M Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus NATL2A Sanger 9x Genome CYANOBACTERIA Complete Complete and Published Environmental, Ocean carbon cycle None Marine Oval-shaped Singles Nonmotile Photosynthetic Mesophile 30 meters depth in North Atlantic Ocean USA 35.1 Public Gc00290 250086 000319_GCAT 59920 13911 637000212 1842 1983 1 0 NC_007335 NCBI, DOE Joint Genome Institute MIT, DOE Joint Genome Institute DOE PLoS Genetics 3, e231 August 12, 2005 Chisholm S Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas haloplanktis BACTERIAL Pseudoalteromonas haloplanktis TAC125 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Coastal, Marine Aerobe Rod-shaped Motile Nonsporulating Psychrophile Coastal sea water near a French Antarctic station France 40 Public Gc00289 140716 000320_GCAT 326442 15713 637000217 3849 3755 2 0 NC_007482, NC_007481 NCBI, PsychroList, Psychroscope Genoscope, Institut Pasteur Genome Res 15, 1325-35 August 10, 2005 Danchin A Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Nocardiopsaceae Thermobifida Thermobifida fusca BACTERIAL Thermobifida fusca YX 501250 Genome ACTINOBACTERIA Complete Complete and Published Bioenergy, Biofuels, Biotechnological, Human Pathogen, Medical Farmer's lung, Mushroom worker's disease, Respiratory infection Self-heated organic materials 4 - 10 Aerobe Rod-shaped Nonmotile Sporulating Thermophile 50 - 55 USA 67.5 Public Gc00288 201958 000321_GCAT 269800 94 637000319 3642 3257 1 0 NC_007333 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Cornell Univ DOE J. Bacteriology 189, 2477-2486 August 10, 2005 Lykidis A Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae 7448 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Medical Enzootic pneumonia, Respiratory infection Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 Infected pig in Lindoia do Sul Santa Catarina Brazil Brazil 28.5 Public Gc00287 137824 000322_GCAT 262722 10639 637000178 920 744 1 0 NC_007332 NCBI, Brazilian Genome LNCC, Universidade Federal do Rio Grande do Sul J. Bacteriol. 187, 5568-5577 August 10, 2005 Zaha A Bacteria Proteobacteria Rhodocyclales Betaproteobacteria Rhodocyclaceae Dechloromonas Dechloromonas aromatica BACTERIAL Dechloromonas aromatica RCB Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Environmental None Fresh water Facultative Rod-shaped Motile Mesophile Potomac River Maryland USA 59.3 Public Gc00286 203562 000323_GCAT 159087 9635 637000088 4501 4373 1 0 NC_007298 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Southern Illinois Univ DOE Unpublished August 8, 2005 Coates, J Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M1 MGAS5005 M1 493418 ATCC BAA-947 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bone infection, Endocarditis, Mastoiditis, Meningitis, Myositis, Necrotizing fasciitis, Otitis, Pharyngitis, Pneumonia, Sinusitis, Tonsillitis Host, Human nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 35 Invasive case in Ontario USA 38.5 Public Gc00285 000324_GCAT 293653 13888 637000297 1838 1973 1 0 NC_007297 NCBI RML-NIAID, Integrated Genomics Inc NIH J. Infect. Dis. 192, 771-82 August 8, 2005 Musser JM Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M28 MGAS6180 M28 692418 ATCC BAA-1064 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Pharyngitis, Tonsillitis Host, Human nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 35 Invasive disease in Texas in 1998 USA 38.5 Public Gc00284 000325_GCAT 319701 13887 637000298 1897 2066 1 0 NC_007296 NCBI RML-NIAID, Integrated Genomics Inc NIH J. Infect. Dis. 192, 760-770 August 8, 2005 Musser JM Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae J 104692 ATCC 2593, NCTC 10110 Genome FIRMICUTES Complete Complete and Published Medical None Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 Brazil 28.5 Public Gc00283 138119 000326_GCAT 262719 10675 637000179 897 742 1 0 NC_007295 NCBI, Brazilian Genome LNCC, Universidade Federal do Rio Grande do Sul J. Bacteriol. 187, 5568-5577 August 7, 2005 Zaha A Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma synoviae BACTERIAL Mycoplasma synoviae 53 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Chicken Pathogen, Medical Respiratory infection Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 Broiler breeder pig in Parana Brazil Brazil 28.5 Public Gc00282 137538 000327_GCAT 262723 10676 637000185 799 766 1 0 NC_007294 NCBI, Brazilian Genome LNCC, Universidade Federal do Rio Grande do Sul J. Bacteriol. 187, 5568-5577 August 7, 2005 Zaha A Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Candidatus Blochmannia Candidatus Blochmannia pennsylvanicus BACTERIAL Candidatus Blochmannia pennsylvanicus BPEN Camponotus Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Evolutionary, Pest control None Endosymbiont, Host, Insect endosymbiont Rod-shaped Mesophile USA 29.6 Public Gc00281 137864 000328_GCAT 291272 13875 637000057 791 661 1 0 NC_007292, CP000016 NCBI Marine Biological Laboratory Genome Res 15, 1023-33 August 5, 2005 Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Colwelliaceae Colwellia Colwellia psychrerythraea BACTERIAL Colwellia psychroerythraea 34H 681610 ATCC BAA-681 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Carbon cycle, Environmental None Sediment Facultative Rod-shaped Motile Psychrophile 8 Arctic marine sediments USA 38 Public Gc00280 131238 000329_GCAT 167879 275 637000081 5373 5178 1 0 NC_003910 NCBI, Entrez J. Craig Venter Institute DOE PNAS 102, 10913-8 July 26, 2005 TIGR Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Candidatus Pelagibacter Candidatus Pelagibacter ubique BACTERIAL Candidatus Pelagibacter ubique SAR11 HTCC1062 680941 HTCC1062 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Ecological, Environmental None Marine Aerobe Rod-shaped Oligotroph Mesophile USA 29.7 Public Gc00279 000330_GCAT 335992 13989 637000058 1308 1429 1 0 NC_007205 NCBI, Oregon State Univ Oregon State Univ, COMB, Diversa NSF Science 309, 1242-5 July 25, 2005 Giovannoni SJ Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Psychrobacter Psychrobacter arcticus BACTERIAL Psychrobacter arcticum 273-4 690310 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Astrobiological, Biotechnological None Fish, Fresh water, Soil Aerobe Rod-shaped Nonmotile Psychrophile -2.5 - Q188620 20-40000 year old Serbian permafrost in Russia USA 42.8 Public Gc00278 137201 000331_GCAT 259536 9633 637000226 2650 2226 1 0 NC_007204 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Michigan State Univ DOE Unpublished July 22, 2005 Bruce D Eukaryota Ascomycota Eurotiales Eurotiomycetes Trichocomaceae Aspergillus Aspergillus fumigatus EUKARYAL Aspergillus fumigatus Af293 Sanger 10.5x Genome FUNGI-ASCOMYCOTA Complete Complete and Published Human Pathogen, Medical Aspergillosis Mesophile United Kingdom 49.8 Public Gc00277 000332_GCAT 330879 131 638208601 29389 9923 8 0 NC_007194-201 NCBI, Sanger Institute, GeneDB, Integr8, Institut Pasteur Sanger Institute, OpGen, Univ of Salamanca, J. Craig Venter Institute, Univ of Manchester, Nagasaki Univ, Institut Pasteur NIH, Wellcome Trust, Beowulf Genomics Unpublished July 19, 2005 Berriman M Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma cruzi EUKARYAL Trypanosoma cruzi CL Brener TC3 Genome PROTISTS-EUGLENOZOA Quality Draft Complete and Published Human Pathogen, Medical American Trypanosomiasis, Chagas disease Mesophile International 51.7 Public Gc00276 000333_GCAT 353153 11755 34000 22570 11 0 AAHK01000000 NCBI, J. Craig Venter Institute, UNSAM Seattle Biomedical Research Institute, J. Craig Venter Institute, Univ of Uppsala NIH-NIAID Science 309, 409-15 July 15, 2005 Andersson B Eukaryota Kinetoplastida Trypanosomatidae Trypanosoma Trypanosoma brucei EUKARYAL Trypanosoma brucei TREU927/4 GUTat10.1 Genome PROTISTS-EUGLENOZOA Quality Draft Complete and Published Animal Pathogen, Human Pathogen, Medical Human sleeping sickness, Trypanosomiasis Host Mesophile International Public Gc00275 000334_GCAT 185431 11756 639622600 26000 9068 11 0 NC_008409- NCBI, Sanger Institute, GeneDB, ToxoDB, J. Craig Venter Institute, Cambridge Univ Sanger Institute, J. Craig Venter Institute NIH-NIAID, Wellcome Trust Science 309, 416-22 July 15, 2005 Berriman M Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus haemolyticus BACTERIAL Staphylococcus haemolyticus JCSC1435 JCSC1435 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Biotechnological, Human Pathogen, Medical Opportunistic infection Host, Human skin Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Japanese inpatient at Juntendo Hospital, Tokyo, in 2000 Japan 32.8 Public Gc00274 130983 000335_GCAT 279808 12508 642555160 2685 2768 1 3 NC_007168 NCBI, DOGAN Juntendo Univ, NITE J Bacteriol 187, 7292-308 July 12, 2005 Keiichi H Archaea Crenarchaeota Sulfolobales Thermoprotei Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius ARCHAEAL Sulfolobus acidocaldarius DSM 639 156881 ATCC 33909 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Fresh water 1 - 6 Obligate aerobe Coccus-shaped Singles Nonmotile Nonsporulating Lithotroph Thermophile 70 - 75 Terrestrial solfataras European Consortium 36.7 Public Gc00273 949 000336_GCAT 330779 13935 638154517 2225 2344 1 0 NC_007181 NCBI, Integr8, Univ of Copenhagen Epidauros Biotechnologie AG, Univ of Copenhagen European Union J. Bacteriol 187, 4992-9 July 8, 2005 Garrett RA Eukaryota Chordata Cypriniformes Actinopterygii Cyprinidae Danio EUKARYAL Danio rerio Tuebingen Sanger Genome CHORDATA-FISH Quality Draft Complete and Published Fresh water Mesophile International Public Gc00272 000337_GCAT 7955 11776 639469800 1700000 32174 25 0 CAAK00000000 NCBI, Sanger Institute, Stanford Univ, Fishman-MGH, Univ of Oregon, Washington Univ, Carnegie Institute of Washington Sanger Institute, Washington Univ NIH Unpublished July 5, 2005 Johnson SL Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Corynebacteriaceae Corynebacterium Corynebacterium jeikeium BACTERIAL Corynebacterium jeikeium K411 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Endocarditis, Meningitis, Nosocomial infection, Septicemia Host, Human skin Facultative Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile Axilla of bone marrow transplant patient Germany 61.4 Public Gc00271 137455 000338_GCAT 306537 13967 637000085 2462 2235 1 0 NC_007164 NCBI Institute of Genome Research, Bielefeld Univ Bielefeld Univ J Bacteriol 187, 4671-82 July 4, 2005 Tauch A Eukaryota Apicomplexa Aconoidasida Theileriidae Theileria Theileria parva EUKARYAL Theileria parva Muguga Genome PROTISTS-APICOMPLEXA Quality Draft Complete and Published Animal Pathogen, Cattle Pathogen, Medical East Coast Fever Mesophile USA 34.1 Public Gc00270 000339_GCAT 333668 16138 640281009 8308 4159 4 0 NC_007344-5 NCBI, J. Craig Venter Institute J. Craig Venter Institute, ILRI CGIAR Science 309, 134-7 July 1, 2005 Gardner MJ Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens Pf-5 493739 ATCC BAA-477 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Antibiotic production, Bioremediation, Biotechnological, Environmental None Fresh water, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 25 - 30 USA 63.3 Public Gc00269 134663 000340_GCAT 220664 327 637000220 7074 6270 1 0 NC_004129 NCBI, USDA, NGRP Oregon State Univ, J. Craig Venter Institute USDA Nature Biotech 23, 873-8 June 30, 2005 Paulsen I Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae NTHi 86-028NP Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Bronchitis, Meningitis, Otitis media, Septicemia, Sinusitis Host Facultative Rod-shaped Nonmotile Mesophile 35 - 37 Pediatric patient with otitis media from Columbus Children's Hospital USA 38.2 Public Gc00268 150522 000341_GCAT 281310 11752 637000125 1913 1927 1 0 NC_007146 NCBI, Microbial-pathogenesis, Microgen Ohio State Univ NIH-NIDCD J. Bacteriol 187, 4627-4636 June 27, 2005 Dyer D Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia felis BACTERIAL Rickettsia felis URRWXCal2 681609 ATCC VR-1525 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Medical Flea-borne Spotted Fever, Rickettsiosis Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile France 32.5 Public Gc00267 137274 000342_GCAT 315456 13884 637000244 1485 1554 1 2 NC_007109 NCBI CNRS CNRG PLoS Biology 3, e248 June 10, 2005 Raoult D Eukaryota Dictyosteliida Dictyostelium Dictyostelium discoideum EUKARYAL Dictyostelium discoideum AX4 695743 Genome PROTISTS-MYCETOZOA Quality Draft Complete and Published Model organism Soil Mesophile International 22 Public Gc00266 000343_GCAT 352472 201 639609200 34000 12500 6 0 NC_007087-92 NCBI, Sanger Institute, BCM-HGSC, IMB, Jena, Univ of Kon, dictyBase International Collaboration NIH, MRC, European Union, DFG Nature 435, 43-57 June 3, 2005 Kuspa A Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris 8004 campestris 23433 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Black rot, Citrus canker Host Aerobe Rod-shaped Motile Mesophile 25 - 30 Inflected cauliflower in Sussex UK in 1958 China 65 Public Gc00265 133030 000344_GCAT 314565 15 637000343 5148 4351 1 0 NC_007086 NCBI The Institute of Microbiology, China, Guangxi Univ Genome Res 15, 757-67 May 27, 2005 Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas syringae BACTERIAL Pseudomonas syringae syringae B728a syringae Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Plant rot Plants Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile USA 59.2 Public Gc00264 000345_GCAT 205918 323 637000224 6100 5258 1 0 NC_007004 NCBI, DOE Joint Genome Institute, Cornell Univ DOE Joint Genome Institute, Univ of California, Berkeley DOE PNAS 102, 11064-9 May 17, 2005 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus bv 1, 9-941 1 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Biothreat, Cattle Pathogen, Human Pathogen, Medical Brucellosis Host Facultative Rod-shaped Nonmotile Mesophile 37 International 57.2 Public Gc00263 115056 000346_GCAT 262698 9619 637000039 3287 3415 2 0 NC_006933, NC_006932 NCBI, Univ of Minnesota, Univ of Uppsala, IIB-UNSAM Univ of Minnesota, Univ of Uppsala, IIB-UNSAM USDA J Bacteriology 187, 2715-26 April 6, 2005 Halling SM Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydophila Chlamydophila abortus BACTERIAL Chlamydophila abortus S26/3 Genome CHLAMYDIAE Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bronchitis, Pharyngitis, Pneumonia, Respiratory infection Host Rod-shaped Nonmotile Mesophile 37 Enzootic abortion case in sheep United Kingdom 39.9 Public Gc00262 000347_GCAT 218497 355 637000065 1144 1000 1 0 NC_004552 NCBI, Sanger Institute Sanger Institute, Moredun Res Inst, Scottish Crop Research Institute The Scottish Office Genome Res. 15, 629-40 April 4, 2005 Parkhill J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Choleraesuis SC-B67 Choleraesuis Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis, Swine paratyphoid Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 58-year old man with sepsis China 52.2 Public Gc00261 000348_GCAT 321314 9618 637000251 4755 5043 1 2 NC_006905 NCBI Chang Gung Univ Nucleic Acids Res. 33, 1690-8 April 4, 2005 Chiu CH Bacteria Bacteroidetes Bacteroidales Bacteroidia Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis NCTC 9343 5232 ATCC 25285, NCTC 9343 Genome BACTEROIDETES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Abscesses, Diarrhea Host, Intestinal microflora Obligate anaerobe Rod-shaped Chemoorganotroph Mesophile 37 United Kingdom 43.2 Public Gc00260 137514 000349_GCAT 272559 46 637000024 5205 4409 1 1 NC_003228 NCBI, Sanger Institute Sanger Institute Beowulf Genomics Science 5714, 1463-1465 March 4, 2005 Parkhill J Eukaryota Entamoeba Entamoeba histolytica EUKARYAL Entamoeba histolytica HM-1:IMSS Sanger 12.5x 681606 ATCC 30459 Genome PROTISTS-ENTAMOEBIDAE Quality Draft Complete and Published Human Pathogen, Medical Amoebiasis Host Mesophile International 24.3 Public Gc00259 000350_GCAT 294381 142 640281001 20772 10202 14 0 NZ_AAFB00000000 NCBI, Sanger Institute, J. Craig Venter Institute Sanger Institute, J. Craig Venter Institute, London School of Hygiene and Tropical Medicine NIH-NIAID, Wellcome Trust Nature 433, 865-8 February 25, 2005 Loftus B Bacteria Proteobacteria Neisseriales Betaproteobacteria Neisseriaceae Neisseria Neisseria gonorrhoeae BACTERIAL Neisseria gonorrhoeae FA1090 118547 ATCC 700825 Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Gonorrhea Host Aerobe Coccus-shaped Nonmotile Nonsporulating Mesophile 35 - 37 Patient with disseminated gonococcal infection USA 52.7 Public Gc00258 112315 000351_GCAT 242231 23 637000188 2153 2148 1 0 NC_002946, AE004969 NCBI, Univ of Oklahoma, Microgen Ohio State Univ, Univ of Oklahoma NIH-NIAID Unpublished February 15, 2005 Roe B Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Aliivibrio Aliivibrio fischeri BACTERIAL Vibrio fischeri ES114 118194 ATCC 700601 Euprymna scolopes Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Medical None Fresh water Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Light organs of the squid Euprymna scolopes USA 38.3 Public Gc00257 128741 000352_GCAT 312309 12986 637000334 4238 4136 2 1 NC_006841, NC_006840 NCBI, Integrated Genomics Inc Univ of Hawaii, Integrated Genomics Inc W.M. Keck Foundation PNAS 102, 3004-3009 February 14, 2005 Ruby EG Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas oryzae BACTERIAL Xanthomonas oryzae pv. oryzae KACC10331 681604 KACC10331 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Blight disease Host Aerobe Rod-shaped Motile Mesophile Korea 63.7 Public Gc00256 111718 000353_GCAT 291331 12931 637000346 4941 4357 1 0 AE013598, NC_006834 NCBI, NIAB MACROGEN, NIAB NAR 33, 577-86 February 4, 2005 Lee BM Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Wolbachia Wolbachia endosymbiont of Brugia malayi BACTERIAL Wolbachia sp. TRS Brugia malayi Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Endosymbiont, Host, Nematode endosymbiont Aerobe Coccus-shaped Nonmotile Mesophile USA 34.2 Public Gc00255 137344 000354_GCAT 292805 12475 637000340 1080 943 1 0 NC_006833, AE017321 NCBI, NEB New England Biolabs, Integrated Genomics Inc NEB PLoS Biology 3, e121 February 4, 2005 Slatko B Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Welgevonden, CIRAD Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Medical, Ruminant Pathogen Heartwater Host Rod-shaped Mesophile Infected tick France 27.5 Public Gc00254 137287 000355_GCAT 254945 13355 639279309 1512 1002 1 0 CR925678, NC_006832 NCBI CIRAD J Bacteriology 188, 2533-42 February 4, 2005 Frutos R Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Gardel Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Medical, Ruminant Pathogen Heartwater Host Rod-shaped Mesophile Caribbean island of Guadeloupe France 27.5 Public Gc00253 137282 000356_GCAT 302409 13356 637000099 1499 994 1 0 NC_006831, CR925677 NCBI CIRAD J Bacteriology 188, 2533-42 February 4, 2005 Frutos R Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus acidophilus BACTERIAL Lactobacillus acidophilus NCFM 681603 ATCC 700396 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Yogurt production None Host, Intestinal microflora, Oral microflora, Vagina microflora 4 - 5 Facultative Rod-shaped Chains Mesophile 45 Human in 1970 USA 34.7 Public Gc00252 128957 000357_GCAT 272621 82 637000138 1993 2035 1 0 CP000033, NC_006814 NCBI, CALPOLY Environm Biotech Inst, State Univ of New York, California Polytechnic State Univ Environm Biotech Inst, Dairy Management Inc PNAS 102, 3906-12 January 31, 2005 Cano R Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Acetobacteraceae Gluconobacter Gluconobacter oxydans BACTERIAL Gluconobacter oxydans 621H 12015 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Vitamin C production None Beer, Fruits, Plants, Wine Aerobe Rod-shaped Motile Mesophile 25 - 30 Germany 61.1 Public Gc00251 128716 000358_GCAT 290633 13325 637000122 2702 2752 1 5 NC_006677, CP000009 NCBI, Goettingen Genomics Laboratory Julich GmbH, Competence Network, Technische Univ, Berlin, Georg-August-Univ Goettingen BMBF, BASF Nat. Biotechnology 23, 195-200 January 24, 2005 Sahm H Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis RP62A 14.94X 111590 ATCC 35984 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Nosocomial infection, Septicemia, Staphylococcal scarlet fever, Toxic-shock syndrome Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Patient with intravascular catheter-associated sepsis USA 32.2 Public Gc00250 141202 000359_GCAT 176279 64 637000282 2616 2782 1 1 CP000029, NC_002976 NCBI J. Craig Venter Institute NIH-NIAID J Bacteriology 187, 2426-38 January 18, 2005 Gill SR Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus COL 10.9X Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Boils, Endocarditis, Fever, Furunculosis, Impetigo, Mastitis, Meningitis, Nosocomial infection, Osteomyelitis, Phlebitis, Pneumonia, Styes, Toxic-shock syndrome Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 USA 32.8 Public Gc00249 133255 000360_GCAT 93062 238 637000273 2809 2769 1 1 CP000046, NC_002951 NCBI J. Craig Venter Institute NIH-NIAID, MGRI J Bacteriology 187, 2426-38 January 13, 2005 Gill SR Archaea Euryarchaeota Thermococcales Thermococci Thermococcaceae Thermococcus Thermococcus kodakarensis ARCHAEAL Thermococcus kodakaraensis KOD1 387880 Genome EURYARCHAEOTA-THERMOCOCCI Complete Complete and Published Biotechnological None Hydrothermal vent Anaerobe Coccus-shaped Motile Nonsporulating Heterotroph Hyperthermophile 85 Solfatara on Kodakara Island Japan Japan 52 Public Gc00248 111673 000361_GCAT 69014 13213 638154520 2088 2411 1 0 NC_006624 NCBI, Integr8 Kwansei Gakuin Univ, Kyoto Univ Genome Res 15, 352-63 January 13, 2005 Fukui T Eukaryota Basidiomycota Tremellales Tremellomycetes Tremellaceae Filobasidiella Filobasidiella neoformans EUKARYAL Cryptococcus neoformans JEC 21 Sanger 12.5x 502433 Genome FUNGI-BASIDIOMYCOTA Quality Draft Complete and Published Human Pathogen, Medical Cryptococcosis Soil Mesophile USA 48.6 Public Gc00247 000362_GCAT 214684 13856 638208604 19051 6744 14 0 NC_006670-94 NCBI, Stanford Univ, J. Craig Venter Institute, Integr8 Stanford Univ, J. Craig Venter Institute NIH-NIAID Science 307, 1321-4 January 10, 2005 TIGR Bacteria Chloroflexi Dehalococcoidetes Dehalococcoides Dehalococcoides ethenogenes BACTERIAL Dehalococcoides ethenogenes 195 Genome CHLOROFLEXI Complete Complete and Published Bioremediation, Biotechnological, Ecological, Environmental None Fresh water, Groundwater Anaerobe Motile Nonsporulating Chemolithotroph Mesophile 35 USA 48.9 Public Gc00246 109890 000363_GCAT 243164 214 637000089 1500 1688 1 0 NC_002936 NCBI J. Craig Venter Institute DOE Science 307, 105-8 January 7, 2005 Seshadri R Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni RM1221 681600 ATCC BAA-1062 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Poultry Pathogen Diarrhea, Food poisoning Host, Wastewater Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Mesophile 42 Skin of a retail chicken by the Food Safety Research Information Office USA 30.31 Public Gc00245 128665 000364_GCAT 195099 303 637000054 1778 1990 1 0 NC_003912, CP000025 NCBI J. Craig Venter Institute USDA PLoS Biol. 3, e15 January 7, 2005 TIGR Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Ehrlichia Ehrlichia ruminantium BACTERIAL Ehrlichia ruminantium Welgevonden, ARC-OVI Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Medical, Ruminant Pathogen Heartwater Host Rod-shaped Mesophile Infected tick South Africa 27.5 Public Gc00244 137287 000365_GCAT 254945 9614 639279308 1516 1001 1 0 CR767821, NC_005295 NCBI, Sanger Institute, OVI Sanger Institute, Univ of Pretoria WOTRO, DST PNAS 102, 838-843 January 5, 2005 Allsopp BA Bacteria Cyanobacteria Chroococcales Synechococcus Synechococcus elongatus BACTERIAL Synechococcus elongatus PCC 6301 104959 PCC 6301, ATCC 27144, 27344, CCAP 1405/1, SAG 1402-1 Genome CYANOBACTERIA Complete Complete and Published Environmental, Ocean carbon cycle None Fresh water, Fresh water Facultative Coccus-shaped Motile Photoautotroph, Photosynthetic Mesophile Japan 55 Public Gc00243 110298 000366_GCAT 269084 13282 637000307 2696 2590 1 0 NC_006576, AP008231 NCBI, Nagoya Univ Nagoya Univ Photosynth Res. 93, 55-67 December 21, 2004 Sugita M Bacteria Proteobacteria Rhodobacterales Alphaproteobacteria Rhodobacteraceae Silicibacter Silicibacter pomeroyi BACTERIAL Silicibacter pomeroyi DSS-3 118527 ATCC 700808, DSM 15171 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Environmental None Fresh water Aerobe Rod-shaped Motile Heterotroph Mesophile USA 64.2 Public Gc00242 111879 000367_GCAT 246200 281 637000267 4109 4363 1 1 NC_003911, CP000031 NCBI, RoseoBase Univ of Georgia, J. Craig Venter Institute NSF Nature 432, 910-3 December 16, 2004 Moran MA Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis SCHU S4 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Tularemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile Human case of tularemia in 1951 International 32.3 Public Gc00241 137424 000368_GCAT 177416 9 637000114 1892 1842 1 0 NC_006570, AJ749949 NCBI, Entrez, GIB, Univ of Uppsala MDS, Univ of Uppsala, WRAIR DARPA, FOI, UK-MOD, WRAIR Nature Genetics 37, 153-9 December 14, 2004 Titball RW Bacteria Proteobacteria Sphingomonadales Alphaproteobacteria Sphingomonadaceae Zymomonas Zymomonas mobilis BACTERIAL Zymomonas mobilis mobilis ZM4 108566 ATCC31821 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioenergy, Biofuels, Biotechnological, Energy production None Facultative Rod-shaped Motile Mesophile 25 - 30 Korea 46.3 Public Gc00240 128453 000369_GCAT 264203 12354 637000356 2056 2125 1 1 NC_006526, AE008692 NCBI Macrogen, Seoul National Univ Macrogen Nat. Biotechnol. 23, 63-68 December 12, 2004 Seo J-S Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale St. Maries Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Anaplasmosis Host Aerobe Coccus-shaped Singles Mesophile Acutely infected cow from Northern Idaho USA 49.8 Public Gc00239 137271 000370_GCAT 234826 40 637000008 1197 1045 1 0 CP000030, NC_004842 NCBI, Washington State Univ Washington State Univ, ADRU, Amplicon Express Inc USDA PNAS 102, 844-9 December 8, 2004 Herndon D Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Paratyphi A SARB42 Paratyphi A 681598 ATCC 9150 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis, Typhoid fever Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 USA 52.5 Public Gc00238 128997 000371_GCAT 295319 13086 637000252 4585 4286 1 0 CP000026, NC_006511 NCBI, Washington Univ Washington Univ NIH-NIAID Nature Genetics 36, 1268-74 December 8, 2004 McClelland M Bacteria Firmicutes Bacillales Bacilli Bacillaceae Geobacillus Geobacillus kaustophilus BACTERIAL Geobacillus kaustophilus HTA426 Genome FIRMICUTES Complete Complete and Published Biotechnological None Deep sea, Marine Aerobe Rod-shaped Motile Sporulating Chemoorganotroph Thermophile Japan 52.1 Public Gc00237 128648 000372_GCAT 235909 13233 637000118 3544 3733 1 1 BA000043, NC_006510 NCBI, ExtremoBase JAMSTEC Nucleic Acids Res 32, 6292-303 December 8, 2004 Takami H Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Idiomarinaceae Idiomarina Idiomarina loihiensis BACTERIAL Idiomarina loihiensis L2TR 371300 ATCC BAA-735T, DSM 15497T Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Hydrothermal vent, Marine Aerobe Rod-shaped Psychrotolerant Halophile USA 47 Public Gc00236 128686 000374_GCAT 283942 10790 637000136 2839 2716 1 0 NC_006512, AE017340 NCBI, Univ of Hawaii Univ of Hawaii NSF PNAS 101, 18036-18041 December 2, 2004 Maqsudul A Bacteria Deinococcus-Thermus Thermales Deinococci Thermaceae Thermus Thermus thermophilus BACTERIAL Thermus thermophilus HB8 120272 ATCC 27634, DSM 579 Genome THERMI Complete Complete and Published Biotechnological None Fresh water, Hot spring Aerobe Nonmotile Thermophile 85 Halotolerant Thermal vent in Japan Japan 69.4 Public Gc00235 1326 000375_GCAT 300852 13202 637000323 1849 2307 1 2 NC_006461, AP008226 NCBI, GIB NIAIST Unpublished November 23, 2004 Kuramitsu S Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus LMG18311 45292 ATCC BAA-250 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production, Yogurt production None Milk Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Thermophile 45 Commercial yogurt in 1974 in the United Kingdom International 39.1 Public Gc00234 129056 000376_GCAT 264199 13162 637000303 1796 2008 1 0 NC_006448, CP000023 NCBI, UCL Univ catholique de Louvain, Integrated Genomics Inc, INRA FNRS, Walloon Region Nature Biotech 22, 1554-8 November 15, 2004 Ehrlich SD Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus thermophilus BACTERIAL Streptococcus thermophilus CNRZ 1066 386925 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production, Yogurt production None Milk Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Thermophile 45 International 39.1 Public Gc00233 128726 000377_GCAT 299768 13163 637000302 1796 2034 1 0 CP000024, NC_006449 NCBI, Entrez Univ catholique de Louvain, Integrated Genomics Inc, INRA FNRS, Walloon Region Nature Biotech 22, 1554-8 November 15, 2004 Ehrlich SD Bacteria Proteobacteria Rhodocyclales Betaproteobacteria Rhodocyclaceae Aromatoleum Aromatoleum aromaticum BACTERIAL Azoarcus sp. EbN1 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Biotechnological None Host, Soil Facultative Rod-shaped Motile Diazotroph Mesophile 26 Germany 65.1 Public Gc00232 129286 000378_GCAT 76114 13242 637000012 4296 4690 1 2 NC_006513, CR555306 NCBI, Max Planck Institute Max Planck Institute Max Planck Society Arch Microbiol. 183, 27-36 November 13, 2004 Rabus R Archaea Euryarchaeota Halobacteriales Halobacteria Halobacteriaceae Haloarcula Haloarcula marismortui ARCHAEAL Haloarcula marismortui ATCC43049 112059 ATCC 43049 Genome EURYARCHAEOTA-HALOBACTERIA Complete Complete and Published Biotechnological None Marine Aerobe Motile Chemoorganotroph Mesophile 40 - 50 Halophile Dead Sea USA 61.1 Public Gc00231 108695 000379_GCAT 272569 105 638154503 3421 4388 2 7 NC_006396, NC_006397 NCBI, Integr8, Institute for Systems Biology Institute for Systems Biology DOE, NSF Genome Res 14, 2221-2234 November 4, 2004 Baliga NS Eukaryota Apicomplexa Eucoccidiorida Coccidia Cryptosporidiidae Cryptosporidium Cryptosporidium hominis EUKARYAL Cryptosporidium hominis TU502 Sanger Genome PROTISTS-APICOMPLEXA Quality Draft Complete and Published Animal Pathogen, Human Pathogen, Medical Diarrhea, Gastroenteritis Host Mesophile USA 30.9 Public Gc00230 000380_GCAT 353151 13200 640281014 8170 3956 8 0 AAEL01000000 NCBI, Virginia Commonwealth Univ Virginia Commonwealth Univ NIH Nature 431, 1107-1112 October 28, 2004 Buck GA Eukaryota Chordata Tetraodontiformes Actinopterygii Tetraodontidae Tetraodon EUKARYAL Tetraodon nigroviridis Sanger 6X Genome CHORDATA-FISH Quality Draft Complete and Published None Fresh water Mesophile Rivers and estuaries of Indonesia Malaysia and India USA Public Gc00229 000381_GCAT 99883 12350 385000 21 0 CAAE01000000 NCBI, NHGRI, Genoscope, Broad Institute Genoscope, Broad Institute NIH-NHGRI Nature 431, 946-57 October 21, 2004 MIT Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus clausii BACTERIAL Bacillus clausii KSM-K16 Genome FIRMICUTES Complete Complete and Published Biotechnological None Soil Mesophile Japan 44.8 Public Gc00228 128510 000382_GCAT 66692 13291 637000019 4303 4349 1 0 AP006627, NC_006582 NCBI, GIB Kao Corporation, Japan Unpublished October 20, 2004 Kawai S Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Photobacterium Photobacterium profundum BACTERIAL Photobacterium profundum SS9 379911 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Facultative Rod-shaped Motile Nonsporulating Psychrotolerant 15 2500m depth from the Sulu Trough Italy 41.7 Public Gc00227 129030 000383_GCAT 298386 13128 637000206 6322 5955 2 1 NC_006370, NC_006371 NCBI, CRIBI Padova Univ Science 307, 1459-61 October 19, 2004 Vale G Bacteria Proteobacteria Legionellales Gammaproteobacteria Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Lens serogroup 1 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Legionellosis Biofilm, Fresh water, Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Chemoorganotroph Mesophile major outbreak in France France 38.4 Public Gc00226 129134 000384_GCAT 297245 13126 637000146 3345 3069 1 1 NC_006369, CR628337 NCBI, Institut Pasteur Institut Pasteur CNRS Nature Genetics 36, 1165-73 October 19, 2004 Buchrieser C Bacteria Proteobacteria Legionellales Gammaproteobacteria Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Paris Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Legionellosis, Pneumonia Biofilm, Fresh water, Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Chemoorganotroph Mesophile endemic in France France 38.3 Public Gc00225 129227 000385_GCAT 297246 13127 637000147 3503 3288 1 1 CR628336, NC_006368 NCBI, Entrez, Institut Pasteur Institut Pasteur CNRS Nature Genetics 36, 1165-73 October 19, 2004 Buchrieser C Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Nocardiaceae Nocardia Nocardia farcinica BACTERIAL Nocardia farcinica IFM 10152 Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Mastitis, Nocardiosis Fresh water, Soil Aerobe Filament-shaped Nonmotile Sporulating Mesophile 37 Bronchus of a 68-year-old male Japanese patient Japan 70.8 Public Gc00224 128807 000386_GCAT 247156 13117 637000198 6021 6068 1 2 AP006618, NC_006361 NCBI, NIID NIID, Chiba Univ, Kitasato Univ JSPS PNAS 101, 14925-30 October 4, 2004 Ishikawa J Eukaryota Bacillariophyta Coscinodiscophyceae Thalassiosiraceae Thalassiosira Thalassiosira pseudonana EUKARYAL Thalassiosira pseudonana CCMP 1335 Sanger 14x 527168 CCMP 1335 Genome PROTISTS-BACILLARIOPHYTA Quality Draft Complete and Published Carbon cycle, Environmental None Marine Photosynthetic Mesophile Moriches Bay, Forge River, Long Island, New York USA 47 Public Gc00223 000387_GCAT 296543 191 25000 11242 24 0 AAFD01000000 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Washington DOE Science 306, 79-86 October 1, 2004 Rokhsar DS Bacteria Bacteroidetes Bacteroidales Bacteroidia Bacteroidaceae Bacteroides Bacteroides fragilis BACTERIAL Bacteroides fragilis YCH46 Genome BACTEROIDETES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Abscesses, Diarrhea Host, Intestinal microflora Obligate anaerobe Rod-shaped Chemoorganotroph Mesophile 37 Japan 43.3 Public Gc00222 129213 000388_GCAT 295405 13067 637000025 5277 4730 1 1 NC_006347, AP006841 NCBI RIKEN, Kitasato Univ, Tokushima Univ JSPS PNAS 101, 14919-24 October 1, 2004 Kuwahara T Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus licheniformis BACTERIAL Bacillus licheniformis DSM13 Goettingen 29491 ATCC 14580 Genome FIRMICUTES Complete Complete and Published Biotechnological, Human Pathogen, Medical Food poisoning Soil Facultative Rod-shaped Sporulating Mesophile Germany 46.2 Public Gc00221 128618 000389_GCAT 279010 13082 639279303 4222 4443 1 0 AE017333, NC_006322 NCBI, Goettingen Genomics Laboratory Goettingen Genomics Laboratory, Competence Network Henkel J Mol Microbiol Biotechnol 7, 204-11 September 28, 2004 Ehrenreich A Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia akari BACTERIAL Rickettsia akari Hartford Sanger Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Rickettsial pox Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile USA 32.3 Public Gc00220 5969 000390_GCAT 293614 12953 640753043 1231 1329 1 0 NC_009881 NCBI Univ of Iowa Unpublished October 2, 2007 Bacteria Proteobacteria Legionellales Gammaproteobacteria Legionellaceae Legionella Legionella pneumophila BACTERIAL Legionella pneumophila Philadelphia-1 108917 ATCC 33152 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Legionellosis Biofilm, Fresh water, Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Chemoorganotroph Mesophile initial event of Legionellosis in Philadelphia USA 38.3 Public Gc00219 129126 000391_GCAT 272624 22 637000148 3397 3054 1 0 NC_002942, AE017354 NCBI, Entrez, Columbia Univ Columbia Univ NIH-NIAID Science 305, 1966-1968 September 24, 2004 Russo J Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Mannheimia Mannheimia succiniciproducens BACTERIAL Mannheimia succiniciproducens MBEL55E Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Bovine rumen, Host Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Korea 42.5 Public Gc00218 22261 000392_GCAT 221988 13068 637000156 2314 2554 1 0 NC_006300, AE016827 NCBI, Entrez KAIST Nat. Biotechnol. 22, 1275-1281 September 22, 2004 Bacteria Proteobacteria Methylococcales Gammaproteobacteria Methylococcaceae Methylococcus Methylococcus capsulatus BACTERIAL Methylococcus capsulatus Bath 108702 NCIMB 11132 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental None Aerobe Coccus-shaped Methanotroph Thermophile 45 International 63.6 Public Gc00217 128429 000393_GCAT 243233 21 637000166 3304 3112 1 0 AE017282, NC_002977 NCBI J. Craig Venter Institute, Univ of Bergen, Norway DOE PLOS Biology 2, 1616-1628 September 17, 2004 Ward N Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia mallei BACTERIAL Burkholderia mallei ATCC 23344 278058 ATCC 23344, NBL 7, China 7, 3873, EY 2233, RH627 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Glanders, Pneumonia Host, Soil Aerobe Rod-shaped Motile Mesophile Chinese patient in Burma who had glanders in 1944 USA 68 Public Gc00216 103409 000394_GCAT 243160 171 637000048 5835 5542 2 0 CP000011, CP000010, NC_006349, NC_006348 NCBI J. Craig Venter Institute, USAMRIID NIH-NIAID PNAS 101, 14246-51 September 17, 2004 Nierman WC Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus E33L (ZK) Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Food poisoning Soil Facultative Rod-shaped Motile Sporulating Mesophile Swab of a zebra carcass in Ethosha National Park in Namibia in 1996 USA 35.4 Public Gc00215 129281 000395_GCAT 288681 12468 637000018 5300 6010 1 5 CP000001, NC_006274 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute DOE J. Bacteriology 188, 3382-3390 September 16, 2004 Gilna P Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia pseudomallei BACTERIAL Burkholderia pseudomallei K96243 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Melioidosis Soil Aerobe Rod-shaped Motile Mesophile Clinical isolate from Thailand United Kingdom 68 Public Gc00214 137094 000396_GCAT 272560 178 637000050 7247 5947 2 0 NC_006350, NC_006351, BX571965, BX571966 NCBI, Sanger Institute Sanger Institute, Porton Down Beowulf Genomics PNAS 101, 14240-5 September 13, 2004 Parkhill J Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus licheniformis BACTERIAL Bacillus licheniformis DSM13 Novozymes 29491 ATCC 14580 Genome FIRMICUTES Complete Complete and Published Biotechnological, Human Pathogen, Medical Food poisoning Soil Facultative Rod-shaped Motile Sporulating Mesophile International 46.2 Public Gc00213 128618 000397_GCAT 279010 12388 639279304 4222 4371 1 0 NC_006270, CP000002 NCBI, BASCAP Novozymes Biotech Inc., INRA, AstraZeneca Genome Biology 5, R77 September 13, 2004 Berka RM Bacteria Firmicutes Clostridiales Clostridia Clostridiales Family XVIII. Incertae Sedis Symbiobacterium Symbiobacterium thermophilum BACTERIAL Symbiobacterium thermophilum IAM 14863 278989 IAM 14863 Genome FIRMICUTES Complete Complete and Published Biotechnological None Soil Anaerobe Rod-shaped Nonmotile Nonsporulating Thermophile 60 Compost in Hiroshima, Japan Japan 68.7 Public Gc00212 129288 000398_GCAT 292459 12994 637000306 3566 3529 1 0 NC_006177, AP006840 NCBI NIID, Nihon Univ, Kitasato Univ JSPS Nucleic Acids Res 32, 4937-44 September 7, 2004 Ueda K Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia garinii BACTERIAL Borrelia garinii PBi, OspA 4 Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Lyme disease Host Aerobe Spiral-shaped Motile Mesophile Cerebrospinal fluid of a patient with neuroborreliosis in Germany Germany 28 Public Gc00211 4174 000399_GCAT 290434 12554 637000037 904 1013 1 2 CP000013, NC_006156 NCBI, SGB IMB, Jena NAR 32, 6038-6046 August 30, 2004 Glockner G Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pseudotuberculosis BACTERIAL Yersinia pseudotuberculosis IP32953 I Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Medical, Swine Pathogen Food poisoning, Gastroenteritis Fresh water, Host, Soil Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 28 - 30 International 47.6 Public Gc00210 128942 000400_GCAT 273123 12950 637000355 4744 4285 1 2 AE008692, NC_006155 NCBI, LLNL Lawrence Livermore National Lab, Institut Pasteur DOE PNAS 101, 13826-31 August 30, 2004 Lamerdin J Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma hyopneumoniae BACTERIAL Mycoplasma hyopneumoniae 232 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Medical, Swine Pathogen Pneumonia, Porcine enzootic pneumonia Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 USA 28.6 Public Gc00209 103186 000401_GCAT 295358 13120 637000177 892 761 1 0 NC_006360, AE017332 NCBI, Univ of Alabama, Molligen, Iowa State Univ Univ of Washington, Iowa State Univ ARC, Bioproperties Pty. Ltd J Bacteriology 186, 7123-33 August 30, 2004 Minion C Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia typhi BACTERIAL Rickettsia typhi Wilmington 621685 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Typhus Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile USA 28.9 Public Gc00208 137152 000402_GCAT 257363 10679 637000246 1111 923 1 0 AE017197, NC_006142 NCBI, BCM-HGSC BCM-HGSC, Univ of Texas NIH-NIAID J Bacteriology 186, 5842-55 August 20, 2004 Weinstock G Bacteria Proteobacteria Desulfobacterales Deltaproteobacteria Desulfobulbaceae Desulfotalea Desulfotalea psychrophila BACTERIAL Desulfotalea psychrophila LSv54 163127 DSM 12343 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological, Carbon cycle, Environmental None Marine, Sediment Anaerobe Rod-shaped Psychrophile 10 Marine sediments off of the coast of Svalbard Germany 46.6 Public Gc00207 10819 000023_GCAT 177439 12751 637000094 3523 3417 1 2 CR522870, NC_006138 NCBI, REGX Epidauros Biotechnologie AG, REGX BMBF Environ. Microbiol. 6, 887-902 August 16, 2004 Amann R Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Microbacteriaceae Leifsonia Leifsonia xyli BACTERIAL Leifsonia xyli xyli CTCB07 Genome ACTINOBACTERIA Complete Complete and Published Agricultural, Plant Pathogen Ratoon stunting Host Aerobe Rod-shaped Nonmotile Mesophile 20 - 25 Brazil 67.7 Public Gc00206 108713 000404_GCAT 281090 212 637000149 2584 2406 1 0 AE016822, NC_006087 NCBI, UNICAMP Univ of Campinas FAPESP Mol. Plant Microbe Interact 17, 827-836 August 4, 2004 Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M6 MGAS10394 M6 493416 ATCC BAA-946 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Pharyngitis, Rheumatic fever, Tonsillitis Host, Nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 35 USA 38.6 Public Gc00205 128611 000405_GCAT 286636 12469 637000293 1899 2008 1 0 NC_006086, CP000003 NCBI RML-NIAID NIH J. Infect. Dis. 190, 727-738 August 3, 2004 Musser JM Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Propionibacteriaceae Propionibacterium Propionibacterium acnes BACTERIAL Propionibacterium acnes KPA171202 681597 DSM 16379 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Acne Host, Human skin Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Human skin Germany 60 Public Gc00204 129049 000406_GCAT 267747 12460 637000215 2560 2439 1 0 NC_006085, AE017283 NCBI, Entrez Univ of Ulm, Goettingen Genomics Laboratory BMBF Science 305, 671-673 July 30, 2004 Gottschalk, G Bacteria Tenericutes Entomoplasmatales Mollicutes Entomoplasmataceae Mesoplasma Mesoplasma florum BACTERIAL Mesoplasma florum L1 267441 ATCC 33453 Genome FIRMICUTES Complete Complete and Published Evolutionary None Host Facultative Nonmotile Nonsporulating Mesophile 20 - 40 USA 27 Public Gc00203 129089 000407_GCAT 265311 10650 637000158 793 760 1 0 NC_006055, AE017263 NCBI, Molligen, Broad Institute Broad Institute Unpublished July 19, 2004 Broad Institute Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Pectobacterium Pectobacterium atrosepticum BACTERIAL Pectobacterium atrosepticum SCRI1043 494319 ATCC BAA-672 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Soft rot Host Facultative Rod-shaped Motile Mesophile 27 - 30 United Kingdom 51 Public Gc00202 000408_GCAT 218491 350 637000102 5064 4647 1 0 NC_004547 NCBI, Sanger Institute, Scottish Crop Research Institute Sanger Institute, Univ of Cambridge, Scottish Crop Research Institute The Scottish Office PNAS 101, 11105-10 July 9, 2004 Parkhill J Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Acinetobacter BACTERIAL Acinetobacter calcoaceticus ADP1 681508 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Nosocomial infection Food, Fresh water, Human skin, Soil Aerobe Rod-shaped Nonmotile Nonsporulating Chemoheterotroph, Heterotroph Mesophile 37 Derivatove of BD413 France 40.4 Public Gc00201 128664 000409_GCAT 62977 12352 637000002 3598 3433 1 0 NC_005966, CR543861 NCBI, Superfamily, Genoscope Genoscope Genoscope NAR 32, 5766-5779 July 9, 2004 Barbe V Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Nakaseomyces Candida glabrata EUKARYAL Candida glabrata CBS 138 Sanger 8x 93937 CBS 138, ATCC 2001, CCRC 20586, DBVPG 3828, IFO 0622, JCM 3761 Genome FUNGI-ASCOMYCOTA Complete Complete and Published Human Pathogen, Medical Human candidasis Mesophile Human feces France Public Gc00200 000410_GCAT 284593 12381 638208603 12280 5397 13 0 NC_006026-36, NC_005967-8 NCBI, Integr8, Genolevures, Institut Pasteur Genoscope, Institut Pasteur Genoscope, Institut Pasteur Nature 430, 35-44 July 1, 2004 Thierry A Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Debaryomyces Debaryomyces hansenii EUKARYAL Debaryomyces hansenii var. hansenii CBS 767 Sanger 9.7x 120222 CBS 767, ATCC 36239, CCRC 21394, DBVPG 6050. IFO 0083, JCM 1990 Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Biotechnological, Cheese ripening, Food industry None Fresh water Mesophile Halotolerant France 36 Public Gc00199 000411_GCAT 284592 13832 638208605 12200 6906 7 0 NC_006043-49 NCBI, Genolevures, PEDANT INRA, Genoscope Genoscope Nature 430, 35-44 July 1, 2004 Casaregola S Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Kluyveromyces Kluyveromyces lactis EUKARYAL Kluyveromyces lactis NRRL Y-1140 Sanger 11.4x 194089 NRRL Y-1140 Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Biotechnological None Mesophile France 38.7 Public Gc00198 000412_GCAT 284590 13835 638208608 10689 5331 6 0 NC_006037-42 NCBI, Genolevures, PEDANT Univ Claude Bernard, Genoscope Genoscope Nature 430, 35-44 July 1, 2004 Wezolowski M Eukaryota Ascomycota Saccharomycetales Saccharomycetes Dipodascaceae Yarrowia Yarrowia lipolytica EUKARYAL Yarrowia lipolytica CLIB122 Sanger 10x Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Biotechnological, Citric acid production None Food, Oil fields Mesophile France 49 Public Gc00197 000413_GCAT 284591 13837 638208611 20502 6520 6 0 NC_006067-72 NCBI, Genolevures, PEDANT INRA, Genoscope Genoscope Nature 430, 35-44 July 1, 2004 Gaillardin C Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus thuringiensis BACTERIAL Bacillus thuringiensis konkukian 97-27 H34 Genome FIRMICUTES Complete Complete and Published Agricultural, Biotechnological, Insect Pathogen Sotto disease Host, Soil Facultative Rod-shaped Motile Sporulating Mesophile Severe human tissue necrosis USA 35.4 Public Gc00196 128893 000414_GCAT 281309 10877 637000023 5237 5590 1 1 AE017355, NC_005957 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute DOE J. Bacteriology 188, 3382-3390 June 30, 2004 Gilna P Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Sterne 322641 Genome FIRMICUTES Complete Complete and Published Medical None Soil Facultative Rod-shaped Motile Sporulating Mesophile USA 35.4 Public Gc00195 25802 000415_GCAT 260799 10878 637000015 5228 5641 1 1 AE017225, NC_005945 NCBI, Entrez Los Alamos National Laboratory, DOE Joint Genome Institute DOE Unpublished June 24, 2004 Gilna P Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MSSA476 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Staphylococcal scarlet fever, Toxic-shock syndrome Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 United Kingdom 37 Public Gc00194 000416_GCAT 282459 266 637000275 2799 2770 1 1 NC_002953 NCBI, Sanger Institute Sanger Institute, Trinity College, Dublin, Univ of Bath Beowulf Genomics PNAS 101, 9786-91 June 22, 2004 Parkhill J Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA252 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Staphylococcal scarlet fever, Toxic-shock syndrome Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 United Kingdom 37 Public Gc00193 000417_GCAT 282458 265 637000274 2902 2853 1 0 NC_002952 NCBI, Sanger Institute Sanger Institute, Trinity College, Dublin, Univ of Bath Beowulf Genomics PNAS 101, 9786-91 June 22, 2004 Parkhill J Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bartonellaceae Bartonella Bartonella henselae BACTERIAL Bartonella henselae Houston-1 114970 ATCC 49882 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bacillary angiomatosis Host Aerobe Rod-shaped Mesophile 37 Sweden 38.2 Public Gc00192 108366 000418_GCAT 283166 196 637000027 1931 1678 1 0 NC_005956, BX897699 NCBI, Univ of Uppsala Univ of Uppsala SSF PNAS 101, 9716-21 June 21, 2004 Andersson S Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bartonellaceae Bartonella Bartonella quintana BACTERIAL Bartonella quintana Toulouse Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Bacillary angiomatosis, Endocarditis, Trench fever Gut of the body louse, Host Aerobe Rod-shaped Nonsporulating Mesophile 37 Sweden 38.8 Public Gc00191 129029 000419_GCAT 283165 44 637000028 1581 1365 1 0 NC_005955, BX897700 NCBI, Univ of Uppsala Univ of Uppsala SSF PNAS 101, 9716-21 June 21, 2004 Andersson S Archaea Euryarchaeota Thermoplasmatales Thermoplasmata Picrophilaceae Picrophilus Picrophilus torridus ARCHAEAL Picrophilus torridus DSM 9790 117420 ATCC 700027 Genome EURYARCHAEOTA-THERMOPLASMATA Complete Complete and Published Biotechnological None Soil 0.7 Aerobe Coccus-shaped Heterotroph Thermophile 60 Germany 36 Public Gc00190 104684 000420_GCAT 263820 10641 638154512 1549 1608 1 0 NC_005877 NCBI, Goettingen Genomics Laboratory, Integr8 Goettingen Genomics Laboratory, GenoMik Competence Network, Georg-August-Univ Goettingen, TU Hamburg-Harburg BMBF PNAS 101, 9091-6 June 7, 2004 Liebl W Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Ames Ancestor A2084 (0581) 11.5x Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Anthrax Soil Facultative Rod-shaped Motile Sporulating Mesophile USA 35.4 Public Gc00189 128585 000421_GCAT 261594 10784 637000013 5227 5973 1 2 AE017334, NC_007530 NCBI J. Craig Venter Institute DOE, NIH-NIAID, ONR J Bacteriol. Epub May 20, 2004 Ravel J Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma mobile BACTERIAL Mycoplasma mobile 163K 303183 ATCC 43663 Genome FIRMICUTES Complete Complete and Published Fish Pathogen Unknown Host Facultative Flask-shaped Singles Motile Nonsporulating Mesophile 20 USA 24.9 Public Gc00188 108671 000422_GCAT 267748 10697 637000180 777 672 1 0 NC_006908 NCBI, Molligen, Broad Institute Broad Institute Genome Res 14, 1447-61 May 18, 2004 Webmaster Eukaryota Basidiomycota Corticiales Agaricomycetes Corticiaceae Phanerochaete Phanerochaete chrysosporium EUKARYAL Phanerochaete chrysosporium RP-78 Sanger 10.5x Genome FUNGI-BASIDIOMYCOTA Quality Draft Complete and Published Biotechnological, Environmental None Aerobe Mesophile USA Public Gc00187 000423_GCAT 273507 135 30000 10 0 AADS01000000 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Nature Biotechnol 22, 695-700 May 2, 2004 Rokhsar D Bacteria Firmicutes Bacillales Bacilli Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes 4b F2365 (cheese isolate) 4b 12.66X 686331 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Food poisoning, Listeriosis Food, Intestinal microflora, Soil Facultative Rod-shaped Singles, Chains Motile Nonsporulating Chemoorganotroph Mesophile 30 - 37 During an outbreak of listeriosis aming patients with AIDS in California in 1985 USA 38 Public Gc00186 129007 000424_GCAT 265669 85 637000154 2905 3078 1 0 NC_002973, AE017262 NCBI J. Craig Venter Institute USDA NAR 32, 2386-95 April 28, 2004 Nelson KE Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila BACTERIAL Candidatus Protochlamydia amoebophila UWE25 Acanthamoeba sp. Genome CHLAMYDIAE Complete Complete and Published Human Pathogen, Medical Pneumonia Host Mesophile "Environmental isolate, endoSymbiotic of Acanthamoeba sp." Germany 34.7 Public Gc00185 136933 000425_GCAT 264201 10700 637000059 2414 2082 1 0 NC_005861 NCBI, GenRE, Univ of Vienna Univ of Vienna BMBF Science 304, 728-30 April 21, 2004 Horn M Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris vulgaris Hildenborough 107037 ATCC 29579 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental, Oil industry None Soil Anaerobe Rod-shaped Singles Motile Nonsporulating Mesophile 25 - 40 Clay soil near Hildenborough in UK in 1946 USA 63.1 Public Gc00184 143122 000426_GCAT 882 51 637000096 3570 3656 1 1 NC_002937, AE017285 NCBI, Entrez, J. Craig Venter Institute J. Craig Venter Institute DOE Nat. Biotechnol. 22, 554-9 April 11, 2004 Heidelberg JF Eukaryota Cyanidiales Bangiophyceae Cyanidiaceae Cyanidioschyzon Cyanidioschyzon merolae EUKARYAL Cyanidioschyzon merolae 10D Sanger Genome PROTISTS-RHODOPHYTA Quality Draft Complete and Published Evolutionary None Fresh water Photosynthetic Mesophile Aulphate-rich acidic hot waters Japan Public Gc00183 000427_GCAT 280699 10792 16520 5331 20 0 AP006483-AP006502 Univ of Tokyo, National Institute of Genetics, Japan Univ of Tokyo, Rikkyo Univ, Kumamoto Univ, Saitama Univ MEXT Nature 428, 653-657 April 8, 2004 Kuroiwa, T Bacteria Deinococcus-Thermus Thermales Deinococci Thermaceae Thermus Thermus thermophilus BACTERIAL Thermus thermophilus HB27 125622 ATCC BAA-163, DSM 7039 Genome THERMI Complete Complete and Published Biotechnological None Fresh water, Hydrothermal vent Aerobe Nonmotile Thermophile 68 Halotolerant Thermal vent in Japan Germany 66.6 Public Gc00182 128421 000428_GCAT 262724 10617 637000322 1894 2278 1 1 NC_005835 NCBI, Goettingen Genomics Laboratory Goettingen Genomics Laboratory Ministry of Lower Saxony Nature Biotechnology 22, 547-553 April 5, 2004 Henne A Eukaryota Chordata Rodentia Mammalia Muridae Rattus EUKARYAL Rattus norvegicus BN/SsNHsdMCW Sanger Genome CHORDATA-MAMMALS Quality Draft Complete and Published Model organism None Mesophile International Public Gc00181 000429_GCAT 10116 10629 639431600 2750000 21166 21 0 NC_005100-20 NCBI, BCM-HGSC, RATMAP, NCBI-genome, Max Planck Institute, J. Craig Venter Institute, RGD Genome Therapeutics, Univ of Utah, BCM-HGSC, Medical College of Wisconsin, J. Craig Venter Institute, Celera Genomics, CHORI, BCGSC NHGRI, NIH, NHLBI Nature 428, 493-521 April 1, 2004 Gibbs R Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans Copenhageni Fiocruz L1-130 Copenhageni 692513 Genome SPIROCHAETES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Leptospirosis Fresh water, Host, Soil Aerobe Spiral-shaped Motile Nonsporulating Mesophile 28 - 30 Patient with severe leptospirosis during an epidemic in 1996 Brazil 35 Public Gc00180 128474 000430_GCAT 267671 10687 637000150 4277 3712 2 0 AE016823, NC_005823, AE016824 NCBI, Univ of Campinas Univ of Campinas, Univ of Sao Paulo CNPq, FAPESP J. Bacteriol 186, 2164-2172 April 1, 2004 Nascimento, ALTO Eukaryota Apicomplexa Eucoccidiorida Coccidia Cryptosporidiidae Cryptosporidium Cryptosporidium parvum EUKARYAL Cryptosporidium parvum Iowa II Genome PROTISTS-APICOMPLEXA Quality Draft Complete and Published Animal Pathogen, Human Pathogen, Medical Diarrhea Mesophile USA 30.2 Public Gc00179 000431_GCAT 353152 144 639605300 90984 3396 8 0 AAEE01000000 NCBI, UCSF, Univ of Minnesota, MRC, NCBI-2 UCSF, Univ of Minnesota NIH-NIAID Science 304, 441-5 March 25, 2004 Abrahamsen M Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Microtus 91001 Microtus Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bubonic plague Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 28 - 30 China 48 Public Gc00178 137036 000432_GCAT 229193 10638 637000354 4595 4415 1 4 NC_005810 NCBI Institute of Microbiology and Epidemiology, China DNA Res 11, 179-97 March 15, 2004 Archaea Euryarchaeota Methanococcales Methanococci Methanococcaceae Methanococcus Methanococcus maripaludis ARCHAEAL Methanococcus maripaludis S2 268749 Genome EURYARCHAEOTA-METHANOCOCCI Complete Complete and Published Biotechnological, Energy production None Fresh water, Salt marsh 6.5 - 8 Obligate anaerobe Coccus-shaped Singles Motile Nonsporulating Chemolithoautotroph, Lithotroph Mesophile 25 - 40 Salt marsh sediment near Pawley Island South Carolina USA 33.1 Public Gc00177 285342 000433_GCAT 267377 10632 638154506 1661 1779 1 0 NC_005791 NCBI, Entrez, Univ of Washington Univ of Washington- Seattle NIH-NIGMS J Bact 186, 6956-6969 March 11, 2004 Leigh J Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Eremothecium EUKARYAL Ashbya (Eremothecium) gossypii ATCC 10895 Sanger 4.2x 195190 ATCC 10895 Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Agricultural, Biotechnological, Plant Pathogen Mesophile International 51 Public Gc00176 000434_GCAT 33169 13834 638208607 9200 4720 7 0 NC_005782-9 NCBI, AGD, Integr8, Duke Univ Basel Univ, Syngenta AG Science 304, 304-7 March 4, 2004 Philippsen P Eukaryota Arthropoda Lepidoptera Insecta Bombycidae Bombyx EUKARYAL Bombyx mori p50T Sanger 3x Genome ARTHROPODA Quality Draft Complete and Published Biotechnological, Protein production None Mesophile Japan Public Gc00175 000435_GCAT 7091 12259 530000 28 0 BAAB00000000 NCBI, Sputnik, SGP, SilkBase, Lep-Genome Univ of Tokyo, NIAS, Japan DNA Research 11, 27-35 February 29, 2004 Mita K Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Treponema Treponema denticola BACTERIAL Treponema denticola ATTC35405 110659 ATTC 35405, DSM 14222 Genome SPIROCHAETES Complete Complete and Published Dental Pathogen, Human Pathogen, Medical Periodontal infection Host 6.5 - 8 Anaerobe Spiral-shaped Singles Motile Nonsporulating Mesophile 30 - 42 USA 37.9 Public Gc00174 129174 000436_GCAT 243275 4 637000327 2843 2846 1 0 NC_002967 NCBI, BCM-HGSC, J. Craig Venter Institute, LANL BCM-HGSC, Univ of Texas, J. Craig Venter Institute NIH-NIDCR PNAS 101, 5646-51 February 12, 2004 Weinstock G Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus ATCC 10987 95588 ATCC 10987 Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Food poisoning Dairy isolate, Soil Facultative Rod-shaped Motile Sporulating Mesophile 25 - 32 Cheese spoilage in Canada USA 38 Public Gc00173 89896 000437_GCAT 222523 74 637000016 5224 6248 1 1 AE017194, NC_003909 NCBI, Entrez J. Craig Venter Institute NIH-NIAID, ONR NAR 32, 977-988 February 11, 2004 Read T Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Wolbachia BACTERIAL Wolbachia pipientis wMel Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Endosymbiont, Host, Insect endosymbiont Aerobe Mesophile USA 35.2 Public Gc00172 173020 000438_GCAT 163164 272 637000339 1267 1349 1 0 NC_002978 NCBI J. Craig Venter Institute NIH-NIAID PLoS Biology 2, 327-341 February 11, 2004 Eisen JA Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus johnsonii BACTERIAL Lactobacillus johnsonii NCC533 NCC 533 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Host, Intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile 25 - 35 Human isolate from the Nestle strain collection International 34.6 Public Gc00171 108679 000439_GCAT 257314 9638 637000140 1992 1955 1 0 AE017198, NC_005362 NCBI Univ of Georgia, North Carolina State Univ, Nestle Nestle PNAS 101, 2512-7 February 11, 2004 Pridmore RD Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma mycoides BACTERIAL Mycoplasma mycoides mycoides SC PG1T Genome TENERICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Medical Pleuropneumonia, Respiratory infection Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 European Consortium 24 Public Gc00170 206851 000440_GCAT 272632 10616 637000181 1211 1065 1 0 NC_005364 NCBI, Molligen, GenDB-Bielefeld Univ, Royal Institute of Technology, Stockholm Bielefeld Univ, National Veterinary Inst, Uppsala, Royal Institute of Technology, Stockholm SSF Genome Res 14, 221-227 February 3, 2004 Uhlen M Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium avium BACTERIAL Mycobacterium avium paratuberculosis K-10 501468 Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Medical Enteritis, Johne's disease, Paratuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 Diary herd in Wisconsin in the 1970's USA 69.3 Public Gc00169 137555 000441_GCAT 262316 91 637000168 4829 4415 1 0 AE016958, NC_002944 NCBI, Univ of Minnesota Univ of Minnesota USDA, Univ of Minnesota Agriculural Experiment Station PNAS 102, 12344-9 January 30, 2004 Kapur V Bacteria Proteobacteria Bdellovibrionales Deltaproteobacteria Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus BACTERIAL Bdellovibrio bacteriovorus HD100 268907 ATCC 15356, DSM 50701 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bacterial Pathogen, Biotechnological, Medical Cell lysis Fresh water, Soil Aerobe Curved-shaped Motile Nonsporulating Mesophile 28 - 30 Germany 50.6 Public Gc00168 40800 000442_GCAT 264462 9637 637000030 3782 3641 1 0 NC_005363, BX842601 NCBI, Max Planck Institute Max Planck Institute Wellcome Trust, BBSRC Science 303, 689-682 January 30, 2004 Schuster SC Bacteria Tenericutes Acholeplasmatales Mollicutes Acholeplasmataceae Candidatus Phytoplasma Onion yellows phytoplasma BACTERIAL Candidatus Phytoplasma onion yellows OY-M Genome FIRMICUTES Complete Complete and Published Agricultural, Plant Pathogen Onions yellow Host Aerobe Mesophile Saga Prefecture Japan in 1982 Japan 27.7 Public Gc00167 108383 000443_GCAT 262768 9615 637000202 860 796 1 0 NC_005303 NCBI, Molligen Univ of Tokyo Nature Genetics 36, 27-9 December 16, 2003 Namba, S Bacteria Proteobacteria Desulfuromonadales Deltaproteobacteria Geobacteraceae Geobacter Geobacter sulfurreducens BACTERIAL Geobacter sulfurreducens PCA 163030 ATCC 51573 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental, Generates electricity None Sediment, Soil Anaerobe Rod-shaped Singles Motile Nonsporulating Chemolithotroph Mesophile 30 Surface sediments of a hydrocarbon-contaminated ditch in Norman Oklahoma USA 60.9 Public Gc00166 10735 000444_GCAT 243231 192 637000120 3814 3587 1 0 NC_002939, AE017180 NCBI, Lovley Lab, Entrez, Geobacter.org J. Craig Venter Institute, Univ of Massachusetts DOE Science 302, 1967-1969 December 14, 2003 Methe BA Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris CGA009 118953 ATCC BAA-98 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water, Soil Facultative Rod-shaped Singles Motile Phototroph Mesophile 25 - 35 USA 65 Public Gc00165 136947 000445_GCAT 258594 57 637000239 5459 4921 1 1 NC_005296 IMG, NCBI, DOE Joint Genome Institute, report DOE Joint Genome Institute, Institute of Molecular Genetics, Prague DOE Nat Biotechnol 22, 55-61 December 14, 2003 Stilwagen S Eukaryota Nematoda Rhabditida Chromadorea Rhabditidae Caenorhabditis Caenorhabditis briggsae EUKARYAL Caenorhabditis briggsae AF16 Sanger 10x Genome NEMATODES Quality Draft Complete and Published Mesophile International Public Gc00164 000446_GCAT 6238 157 104000 19507 6 0 CAAC00000000 NCBI, Sanger Institute, NematodeNet, Washington Univ, WormBase Sanger Institute, Cold Spring Harbor Laboratory, Washington Univ NSF, NIH, Wellcome Trust PLoS Biology 1, 166-192 November 17, 2003 Stein L Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae BACTERIAL Corynebacterium diphtheriae gravis NCTC 13129 gravis 118780 NCTC 13129 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Diphtheria, Respiratory infection Host Facultative Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile Pharyngeal membrane of a 72-year-old unimmunized UK female with clinical diphtheria acquired during a short Baltic cruise in 1997 United Kingdom 53.5 Public Gc00163 000447_GCAT 257309 87 637000082 2488 2398 1 0 NC_002935, BX248353 NCBI, Sanger Institute, Entrez Sanger Institute, PHLS Beowulf Genomics NAR 31, 6516-6523 November 15, 2003 Parkhill J Archaea Nanoarchaeota Nanoarchaeum Nanoarchaeum equitans ARCHAEAL Nanoarchaeum equitans Kin4-M Ignicoccus Genome NANOARCHAEOTA Complete Complete and Published Biotechnological None Hydrothermal vent, Marine Anaerobe Hyperthermophile USA 31.6 Public Gc00162 125020 000448_GCAT 228908 9599 638154511 490 643 1 NC_005213 NCBI, Integr8 Diversa, Celera Genomics Diversa PNAS 100, 12984-8 October 28, 2003 Noordewier M Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Vibrio Vibrio vulnificus BACTERIAL Vibrio vulnificus YJ016 379912 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Fish Pathogen, Medical Food poisoning, Gastroenteritis, Septicemia Fresh water Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 20 - 30 Halophile Hospital isolate from Taiwan Taiwan 46.8 Public Gc00161 128588 000449_GCAT 196600 1430 637000337 5211 5224 2 0 NC_005139, NC_005140 NHRI, NCBI_2, NCBI_1, Yang-Ming Univ, Taiwan Yang-Ming Univ, Taiwan NHRI Genome Res 13, 2577-87 October 15, 2003 Shih-Feng Tsai Bacteria Cyanobacteria Gloeobacterales Gloeobacteria Gloeobacter Gloeobacter violaceus BACTERIAL Gloeobacter violaceus PCC 7421 106390 PCC 7421, ATCC 29082, SAG 7.82, DCC D0637 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Evolutionary None Fresh water, Soil Rod-shaped Nonmotile Photoautotroph, Photosynthetic Mesophile Calcereous rock in Switzerland Japan 62 Public Gc00160 3564 000450_GCAT 251221 9606 637000121 4659 4491 1 0 NC_005125 NCBI, Entrez, Kazusa Kazusa DNA Research Institute KDRI DNA Res 10, 137-145 October 6, 2003 Tabata S Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Photorhabdus Photorhabdus luminescens BACTERIAL Photorhabdus luminescens laumondii TT01 303432 Heterorhabditis bacteriophora Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Insect Pathogen, Medical Septicemia, Toxemia Host Facultative Rod-shaped Motile Nonsporulating Mesophile Isolated on Trinidad and Tobago France 42.8 Public Gc00159 95127 000451_GCAT 243265 9605 637000207 5688 5038 1 0 NC_005126 NCBI, Institut Pasteur, PhotoList Institut Pasteur CNRS, INRA, Institut Pasteur Nature Biotech 21, 1307-1313 October 5, 2003 Kunst F Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Helicobacteraceae Wolinella Wolinella succinogenes BACTERIAL Wolinella succinogenes DSM 1740 54181 DSM 1740, ATCC 29543 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Medical None Host, Rumen Anaerobe Spiral-shaped Motile Mesophile Bovine rumen fluid Germany 48.5 Public Gc00158 128800 000452_GCAT 273121 445 637000341 2110 2145 1 0 NC_005090 NCBI, Max Planck Institute, NIG Max Planck Institute PNAS 100, 11690-5 September 30, 2003 Schuster SC Bacteria Proteobacteria Neisseriales Betaproteobacteria Neisseriaceae Chromobacterium Chromobacterium violaceum BACTERIAL Chromobacterium violaceum ATCC 12472 6971 ATCC 12472 Genome PROTEOBACTERIA-BETA Complete Complete and Published Antibiotic production, Biotechnological, Energy production, Human Pathogen, Medical Diarrhea, Septicemia Fresh water, Host, Soil Facultative Sphere-shaped Motile Nonsporulating Mesophile 25 Brazil 64.8 Public Gc00157 92928 000453_GCAT 243365 444 637000074 4751 4645 1 0 AE016825, NC_005085 NCBI, Brazilian Genome Brazilian Genome CNPq, MCT PNAS 100, 11660-5 September 18, 2003 Simpson AJG Bacteria Bacteroidetes Bacteroidales Bacteroidia Porphyromonadaceae Porphyromonas Porphyromonas gingivalis BACTERIAL Porphyromonas gingivalis W83 494669 Genome BACTEROIDETES Complete Complete and Published Human Pathogen, Medical Dental plaque, Periodontal infection Colon, Gastrointestinal tract, Host, Oral microflora, Respiratory tract Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 USA 48.3 Public Gc00156 93824 000454_GCAT 242619 48 637000209 2343 1988 1 0 NC_002950 NCBI, J. Craig Venter Institute, FDC, LANL J. Craig Venter Institute, Forsyth Dental Center NIH-NIDR J. Bacteriol 185, 5591-5601 September 9, 2003 Nelson KE Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum Kalinowski 681596 ATCC 13032, DSM 20300 Genome ACTINOBACTERIA Complete Complete and Published Amino acids production, Biotechnological, Food industry, Glutamate production None Normal microflora, Soil Facultative Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile Germany 53.8 Public Gc00155 137486 000455_GCAT 196627 13760 639279306 3282 3244 1 0 NC_006958, BX927147 NCBI Degussa, Bielefeld Univ BMBF J Biotechnol 104, 5-25 September 4, 2003 Kalinowski J Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 3 BACTERIAL Pseudomonas syringae tomato DC3000 tomato 493307 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Plant rot, Speck disease Endophyte, Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile USA 58.4 Public Gc00154 150510 000456_GCAT 223283 359 637000225 6397 5796 1 2 NC_004578 NCBI, Cornell Univ, J. Craig Venter Institute, Pseudomonas Genome DBase Univ of Nebraska, Kansas State Univ, Cornell Univ, J. Craig Venter Institute, Univ of Missouri NSF PNAS 100, 10181-6 September 2, 2003 Buell R Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma gallisepticum BACTERIAL Mycoplasma gallisepticum R Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Food industry, Medical, Poultry Pathogen Respiratory infection Host Facultative Sphere-shaped Singles Motile Nonsporulating Mesophile 37 USA 31.5 Public Gc00153 89962 000457_GCAT 233150 409 637000175 996 775 1 0 NC_004829 NCBI, Molligen Univ of Connecticut Microbiology 149, 2307-2316 September 1, 2003 Geary S.J Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus pastoris CCMP1986 (MED4) 527925 CCMP1986 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Oval-shaped Nonmotile Photosynthetic Mesophile 5m depth in Mediterranean Sea USA 30.8 Public Gc00152 92037 000458_GCAT 59919 213 637000214 1657 1768 1 0 NC_005072 NCBI, ORNL, DOE Joint Genome Institute, Kazusa DOE Joint Genome Institute DOE Nature 424, 1042-7 August 13, 2003 Chisholm SW Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus MIT9313 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Oval-shaped Nonmotile Photosynthetic Mesophile USA 50.7 Public Gc00151 3348 000459_GCAT 74547 220 637000211 2410 2340 1 0 NC_005071 NCBI, DOE Joint Genome Institute, Kazusa DOE Joint Genome Institute DOE Nature 424, 1042-7 August 13, 2003 Chisholm SW Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Prochlorococcus sp. WH8102 528814 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Coccus-shaped Motile Photoautotroph, Photosynthetic Mesophile Tropical Atlantic ocean in 1981 USA 59.4 Public Gc00150 92221 000460_GCAT 84588 230 637000314 2434 2592 1 0 NC_005070 NCBI, DOE Joint Genome Institute, Kazusa Scripps Institute of Oceanography, DOE Joint Genome Institute DOE Nature 424, 1037-42 August 13, 2003 Palenik B Bacteria Cyanobacteria Prochlorales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus BACTERIAL Prochlorococcus marinus marinus CCMP1375 (SS120) 278949 CCMP1375 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Marine Oval-shaped Nonmotile Photosynthetic Mesophile France 36.4 Public Gc00149 88136 000461_GCAT 167539 419 637000213 1751 1935 1 0 NC_005042 NCBI, Kazusa, Genoscope, Station Biologique de Roscoff Genoscope European Union PNAS 100, 10020-5 August 13, 2003 Partensky F Bacteria Proteobacteria Burkholderiales Betaproteobacteria Alcaligenaceae Bordetella Bordetella bronchiseptica BACTERIAL Bordetella bronchiseptica RB50 494021 ATCC BAA-588, NCTC-13252 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Medical Respiratory infection Host Obligate aerobe Rod-shaped Motile Mesophile 35 - 37 Rabbit United Kingdom 68.1 Public Gc00148 91984 000462_GCAT 257310 24 637000032 5338 5091 1 0 BX470250, NC_002927 NCBI, Sanger Institute, Entrez Sanger Institute, Univ of Cambridge Beowulf Genomics Nature Genetics 35, 32-40 August 10, 2003 Parkhill J Bacteria Proteobacteria Burkholderiales Betaproteobacteria Alcaligenaceae Bordetella Bordetella parapertussis BACTERIAL Bordetella parapertussis 12822 494019 ATCC BAA-587, NCTC-13253 Genome PROTEOBACTERIA-BETA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Respiratory infection Host Obligate aerobe Rod-shaped Motile Mesophile 35 - 37 Infected infant in Germany in 1993 United Kingdom 68.1 Public Gc00147 91165 000463_GCAT 257311 25 637000033 4773 4452 1 0 NC_002928, BX470249 NCBI, Sanger Institute Sanger Institute, Univ of Cambridge Beowulf Genomics Nature Genetics 35, 32-40 August 10, 2003 Parkhill J Bacteria Proteobacteria Burkholderiales Betaproteobacteria Alcaligenaceae Bordetella Bordetella pertussis BACTERIAL Bordetella pertussis Tohama I 494022 ATCC BAA-589, NCTC-13251 Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen strictly, Medical Respiratory infection Host Aerobe Rod-shaped Motile Mesophile 35 - 37 Patient with whooping cough United Kingdom 67.7 Public Gc00146 137495 000464_GCAT 257313 26 637000034 4086 3833 1 0 NC_002929, BX470248 NCBI, Sanger Institute, MDS Sanger Institute, Univ of Cambridge Beowulf Genomics Nature Genetics 35, 32-40 August 10, 2003 Parkhill J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Candidatus Blochmannia BACTERIAL Candidatus Blochmannia floridanus Camponotus floridanus Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Pest control None Bacteriocytes, Endosymbiont, Host, Insect endosymbiont Rod-shaped Mesophile 30 Spain 27.4 Public Gc00145 191713 000465_GCAT 203907 443 637000056 705 672 1 0 BX248583, NC_005061 NCBI Univ of Valencia MEC, EU PNAS 100, 9388-93 August 5, 2003 Moya A Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Cellulomonadaceae Tropheryma Tropheryma whipplei BACTERIAL Tropheryma whipplei Twist type 2A 9.2x 304207 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Whipple's disease Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 France 46.3 Public Gc00144 146972 000466_GCAT 203267 95 637000331 927 867 1 0 NC_004572 NCBI, Genoscope CNRS, Genoscope Genome Res 13, 1800-1809 August 1, 2003 Raoult D Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae TW-183 302230 Genome CHLAMYDIAE Complete Complete and Published Human Pathogen, Medical Bronchitis, Heart disease, Pharyngitis, Pneumonia, Respiratory infection Host Rod-shaped Nonmotile Mesophile 37 In 1965 from a child's conjunctiva during a trachoma vaccine trial in Taiwan USA 40.6 Public Gc00143 90574 000467_GCAT 182082 420 637000071 1225 1160 1 0 AE009440, NC_005043 NCBI ALTANA Pharmaceuticals ALTANA Pharmaceuticals Unpublished July 25, 2003 Melchers K Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Haemophilus Haemophilus ducreyi BACTERIAL Haemophilus ducreyi 35000HP 328755 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Chancroid, Genital ulcer Host Anaerobe Rod-shaped Nonmotile Mesophile USA 38.2 Public Gc00142 145814 000468_GCAT 233412 38 637000124 1698 1860 1 0 AE017143, NC_002940 NCBI, Entrez, Microbial-pathogenesis The Institute for Systems Biology, CRI, Ohio State Univ NIH-NIAID Unpublished July 23, 2003 Munson RS Bacteria Planctomycetes Planctomycetales Planctomycetacia Planctomycetaceae Rhodopirellula Rhodopirellula baltica BACTERIAL Rhodopirellula baltica SH 1 381524 DSM 10527 Genome PLANCTOMYCETES Complete Complete and Published Biotechnological, Environmental None Marine Aerobe Sphere-shaped Motile Nonsporulating Heterotroph Mesophile 28 Kieler Bucht (a fiord near the city of Kiel in Germany) Germany 55.4 Public Gc00141 137345 000022_GCAT 243090 413 637000236 7145 7414 1 0 NC_005027 NCBI, Max Planck Institute, REGX Max Planck Institute, REGX BMBF PNAS 100, 8298-303 July 8, 2003 Gloeckner FO Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Corynebacteriaceae Corynebacterium Corynebacterium efficiens BACTERIAL Corynebacterium efficiens YS-314T 291608 DSM 44549 Genome ACTINOBACTERIA Complete Complete and Published Amino acids production, Biotechnological None Soil Facultative Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 30 - 45 "Soils at Kanagawa, Japan in the late 1980's" Japan 63.1 Public Gc00140 129195 000470_GCAT 196164 305 637000083 3147 3046 1 2 NC_004369 NCBI, NITE Ajinomoto Co., Inc, NITE NITE Genome Res 13, 1572-9 July 1, 2003 Gojobori T Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Helicobacteraceae Helicobacter Helicobacter hepaticus BACTERIAL Helicobacter hepaticus 3B1 45566 ATCC 51449 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Medical, Mice Pathogen Gastric bowel disease, Hepatic inflammation, Hepatitis, Liver cancer Host, Intestinal microflora Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile 37 Germany 35.9 Public Gc00139 000471_GCAT 235279 185 637000131 1799 1921 1 0 AE017125, NC_004917 NCBI MWG-Biotech, Univ of Wuerzburg, MIT, GeneData PathoGenoMik, NIH PNAS 100, 7901-7906 June 24, 2003 Suerbaum S Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis AF2122/97(spoligotype 9) 501447 Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 In 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes European Consortium 65.6 Public Gc00138 000472_GCAT 233413 89 637000169 4345 4012 1 0 NC_002945, BX248333 NCBI, Sanger Institute, Pasteur Sanger Institute, Institut Pasteur MAFF, Wellcome Trust, Beowulf Genomics PNAS 100, 7877-7882 June 24, 2003 Gordon SV Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M3 (SSI-1) M3 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Necrotizing fasciitis, Rheumatic fever Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 30 - 35 Toxic-shock patient in Japan Japan 38.6 Public Gc00137 128781 000473_GCAT 193567 301 637000301 1894 1961 1 0 NC_004606 NCBI, GIRC Japanese Consortium JSPS Genome Res 13, 1042-55 June 10, 2003 Nakagawa I Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus anthracis BACTERIAL Bacillus anthracis Ames Genome FIRMICUTES Complete Complete and Published Biothreat, Medical None Soil Aerobe Rod-shaped Motile Sporulating Mesophile USA 35.4 Public Gc00136 128751 000474_GCAT 198094 309 637000014 5227 5569 1 0 AE016877, NC_003997 NCBI J. Craig Venter Institute DOE, NIH-NIAID, ONR Nature 423, 81-86 May 1, 2003 Read TD Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus DSM 31, ATCC 14579 4491 ATCC 14579 Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Food poisoning Soil Facultative Rod-shaped Motile Sporulating Mesophile 25 - 35 International 35.3 Public Gc00135 129093 000475_GCAT 226900 384 637000017 5411 5610 1 1 AE016877, NC_004722 NCBI Integrated Genomics Inc, INRA DARPA Nature 423, 87-91 May 1, 2003 Ivanova N Bacteria Proteobacteria Nitrosomonadales Betaproteobacteria Nitrosomonadaceae Nitrosomonas Nitrosomonas europaea BACTERIAL Nitrosomonas europaea IFO 140591 ATCC 19718 Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Environmental, Wastewater treatment None Fresh water, Soil Aerobe Motile Chemolithoautotroph Mesophile USA 50.7 Public Gc00134 251028 000476_GCAT 228410 52 637000195 2812 2631 1 0 NC_004757 NCBI, ORNL, DOE Joint Genome Institute DOE Joint Genome Institute DOE J. Bacteriol. 185, 2759-2773 April 30, 2003 Chain P Bacteria Proteobacteria Legionellales Gammaproteobacteria Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii Nine Mile phase I / RSA 493 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Food poisoning, Q fever Host, Soil Facultative Coccus-shaped Singles Motile Sporulating Mesophile 37 USA 42.7 Public Gc00133 83477 000477_GCAT 227377 41 637000086 1995 2220 1 1 NC_002971, AE016828 NCBI J. Craig Venter Institute NIH-NIAID, DARPA PNAS 100, 5455-60 April 29, 2003 Heidelberg JF Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Leptospiraceae Leptospira Leptospira interrogans BACTERIAL Leptospira interrogans lai 56601 lai Genome SPIROCHAETES Complete Complete and Published Animal Pathogen, Medical Leptospirosis Fresh water, Host, Soil Aerobe Spiral-shaped Motile Nonsporulating Mesophile 28 - 30 China 36 Public Gc00132 148535 000478_GCAT 189518 293 637000151 4690 4815 2 0 AE010301, AE010300, NC_004342, NC_004343 NCBI_2, NCBI_1, J. Craig Venter Institute, CHGC, LeptoList Chinese National Human Genome Center at Shanghai CNCBD Nature 422, 888-93 April 24, 2003 Zhao G-P Eukaryota Ascomycota Sordariales Sordariomycetes Sordariaceae Neurospora Neurospora crassa EUKARYAL Neurospora crassa OR74A Sanger 10x Genome FUNGI-ASCOMYCOTA Quality Draft Complete and Published Fungal Genome Initiative (FGI) Mesophile USA 50.4 Public Gc00131 000479_GCAT 367110 13841 640281015 37097 10082 7 0 AABX01000000 NCBI, J. Craig Venter Institute, Broad Institute Univ of Kentucky, Univ of Kansas, OGI School of Science & Engineering, Broad Institute NSF Nature 422, 859-68 April 23, 2003 Birren B Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 2457T 2a 581834 ATCC 700930 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Dysenteria, Food poisoning, Gastroenteritis Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 USA 50.9 Public Gc00130 129310 000480_GCAT 198215 408 637000263 4599 4607 1 0 NC_004741 NCBI, Univ of Wisconsin Univ of Wisconsin NIH-NIAID Infect. Immun. 71, 2775-2786 April 23, 2003 Blattner FR Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydophila Chlamydophila caviae BACTERIAL Chlamydophila caviae GPIC 302235 Genome CHLAMYDIAE Complete Complete and Published Animal Pathogen, Medical, Swine Pathogen Bronchitis, Pharyngitis, Pneumonia, Respiratory infection Host Rod-shaped Nonmotile Mesophile 37 USA 39.2 Public Gc00129 144863 000481_GCAT 227941 228 637000066 1173 1091 1 1 NC_003361, AE015925 NCBI J. Craig Venter Institute NIH-NIAID NAR 31, 2134-2147 April 15, 2003 Read TD Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Streptomycetaceae Streptomyces Streptomyces avermitilis BACTERIAL Streptomyces avermitilis MA-4680 181026 ATCC 31267, NRRL 8165, NCIMB 12804 Genome ACTINOBACTERIA Complete Complete and Published Antibiotic production, Biotechnological None Soil Aerobe Filament-shaped Nonmotile Sporulating Mesophile 25 - 35 Soil sample collected in Shizuoka Prefecture Japan Japan 70.7 Public Gc00128 78360 000482_GCAT 227882 189 637000304 9025 7785 1 1 NC_003155 NCBI, NITE Univ of Tokyo, NIID, Kitasato Univ, NITE MEXT Nat. Biotechnol 21, 526-31 April 14, 2003 Omura S Bacteria Firmicutes Lactobacillales Bacilli Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis V583 118519 ATCC 700802 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Bacteremia, Endocarditis, Urinary infection Host, Intestinal microflora, Wastewater Facultative Nonmotile Chemoorganotroph Mesophile 37 USA 37.5 Public Gc00127 147392 000483_GCAT 226185 70 637000101 3218 3393 1 3 NC_004668, AE016830 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Science 299, 2071-4 March 28, 2003 Paulsen IT Bacteria Bacteroidetes Bacteroidales Bacteroidia Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron BACTERIAL Bacteroides thetaiotaomicron VPI-5482 106468 ATCC 29148 Genome BACTEROIDETES Complete Complete and Published Medical Peritonitis Host, Intestinal microflora Obligate anaerobe Mesophile Feces of a healthy adult USA 42.8 Public Gc00126 85849 000484_GCAT 226186 399 637000026 6260 4922 1 1 NC_004663, AE015928 NCBI, Entrez AstraZeneca, Washington Univ NIH, AstraZeneca Science 299, 2074-6 March 28, 2003 Gordon JI Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Typhi Ty2 ATCC700931 Typhi Ty2 581835 ATCC 700931 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis, Typhoid fever Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 USA 52 Public Gc00125 148451 000485_GCAT 209261 371 637000253 4791 4766 1 0 NC_004631 NCBI, Univ of Wisconsin Univ of Wisconsin NIH-NIAID J. Bacteriol 185, 2330-7 March 21, 2003 Blattner FR Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Vibrio Vibrio parahaemolyticus BACTERIAL Vibrio parahaemolyticus RIMD 2210633 O3:K6 377507 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Gastroenteritis Fresh water Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 20 - 30 Clinical strain isolated in 1996 in Osaka Japan Japan 45.3 Public Gc00124 107846 000486_GCAT 223926 360 637000335 5165 5052 2 0 NC_004605, NC_004603 NCBI_2, NCBI_1, GIRC, J. Craig Venter Institute Japanese Consortium, RIKEN JSPS Lancet 361, 743-9 March 1, 2003 Iida T Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Cellulomonadaceae Tropheryma Tropheryma whipplei BACTERIAL Tropheryma whipplei TW08/27 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Whipple's disease Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Cerebrospinal fluid a woman who had suffered severe weight loss in Germany International 46.3 Public Gc00123 80600 000487_GCAT 218496 354 637000330 925 842 1 0 NC_004551 NCBI, Sanger Institute, J. Craig Venter Institute , Univ of Birmingham, Sanger Institute, Stanford Univ Beowulf Genomics Lancet 361, 637-644 February 24, 2003 Parkhill J Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus plantarum BACTERIAL Lactobacillus plantarum WCFS1 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Lactic acid production None Host, Intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile 25 - 35 Human saliva Netherlands 44.5 Public Gc00122 80507 000488_GCAT 220668 356 637000141 3308 3311 1 3 NC_004567, AL935263 NCBI, Univ of Nijmegen, Entrez, J. Craig Venter Institute, Greenomics Greenomics, Wageningen Centre for Food Sciences WCFS PNAS 100, 1990-5 February 14, 2003 Kleerebezem M Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia sibirica BACTERIAL Rickettsia sibirica 246 621684 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical North Asian tick typhus Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile USA 32.5 Public Gc00121 5931 000489_GCAT 272951 1414 638341178 1250 1270 1 0 NZ_AABW00000000 NCBI, Agencourt Bioscience Univ of Maryland School of Medicine, CDC, Agencourt Bioscience NIH-NIAID NAR 32, 1059-1064 February 6, 2003 Malek JA Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium tetani BACTERIAL Clostridium tetani Massachusetts E88 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Tetanus Host Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile Germany 29.6 Public Gc00120 128532 000490_GCAT 212717 81 637000080 2799 2572 1 1 AE015927, NC_004557 NCBI, Goettingen Genomics Laboratory, J. Craig Venter Institute, ClostriDB Goettingen Genomics Laboratory German Ministry for Science and Culture PNAS 100, 1316-21 February 5, 2003 Gottschalk G Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa-grape Temecula1 581964 ATCC 700964 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Black rot, Citrus canker Host Aerobe Rod-shaped Singles Mesophile 26 - 28 In 1998 from a naturally infected Californian grapevine Brazil 51.8 Public Gc00119 79335 000491_GCAT 183190 285 637000349 2519 2102 1 1 NC_004556 NCBI, J. Craig Venter Institute AEG Brazilian Consortium USDA, FAPESP J. Bacteriol 185, 1018-1026 February 3, 2003 Van Sluys MA Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola BP Baizongia pistaciae Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Endosymbiont, Host, Insect endosymbiont Mesophile Spain 26 Public Gc00118 146724 000492_GCAT 224915 256 639633012 615 559 1 0 AE016826, NC_004545 NCBI, J. Craig Venter Institute, CNB Univ of Valencia, Centro de Astrobiologia, Spain, CNB European Social Funds PNAS 100, 581-586 January 21, 2003 Moya A Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus epidermidis BACTERIAL Staphylococcus epidermidis ATCC 12228 53811 ATCC 12228 Genome FIRMICUTES Complete Complete and Published Medical None Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 China 32.1 Public Gc00117 146872 000493_GCAT 176280 279 637000281 2499 2677 1 6 NC_004461 NCBI, SepiList, J. Craig Venter Institute Shanghai Medical Univ, Chinese National Human Genome Center at Shanghai NSFC Mol Microbiology 49, 1577-93 January 2, 2003 Wen Y-M Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium japonicum BACTERIAL Bradyrhizobium japonicum USDA110 84001 Soybeans Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural None Host Aerobe Rod-shaped Motile Photosynthetic Mesophile 25 - 30 Soybean nodule in 1957 in Florida USA Japan 64.1 Public Gc00116 137054 000494_GCAT 224911 17 637000038 9105 8401 1 0 BA000040, NC_004463 NCBI, Kazusa, J. Craig Venter Institute Kazusa DNA Research Institute KDRI DNA Research 9, 189-97 December 31, 2002 Kaneko, T Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Vibrio Vibrio vulnificus BACTERIAL Vibrio vulnificus CMCP6 377508 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Fish Pathogen, Medical Gastroenteritis, Septicemia Fresh water Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 20 - 30 Korea 46 Public Gc00115 146894 000495_GCAT 216895 349 637000336 5211 4688 2 0 NC_004460, NC_004459 NCBI_2, NCBI_1, DDBJ, J. Craig Venter Institute, Chonnam National Univ Chonnam National Univ NHRI Unpublished December 23, 2002 Eukaryota Chordata Enterogona Ascidiacea Cionidae Ciona Ciona intestinalis EUKARYAL Ciona intestinalis Sanger 8.2x Genome CHORDATA-FISH Quality Draft Complete and Published Evolutionary None Fresh water Mesophile USA Public Gc00114 000496_GCAT 7719 166 116700 16000 14 0 AABS00000000 NCBI, DOE Joint Genome Institute, J. Craig Venter Institute DOE Joint Genome Institute DOE Science 298,2157-67 December 13, 2002 Rokhsar D Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O6:K2:H1 UPEC-CFT073 O6:K2:H1 118707 ATCC 700928 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Cystitis, Pyelonephritis, Urinary infection Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 blood and urine from a woman with acute pyelonephritis, Baltimore Maryland USA 50.5 Public Gc00113 146635 000497_GCAT 199310 313 637000105 5231 5664 1 0 AE014075, NC_004431 NCBI, Univ of Wisconsin, J. Craig Venter Institute Univ of Wisconsin NIH-NIAID PNAS 99, 17020-4 December 9, 2002 Blattner FR Eukaryota Chordata Rodentia Mammalia Muridae Mus EUKARYAL Mus musculus C57BL/6J 5x Genome CHORDATA-MAMMALS Quality Draft Complete and Published Model organism Mesophile International 41.7 Public Gc00112 000498_GCAT 10090 13183 639370800 2644093 39625 20 0 NC_000067-87 NCBI, Sanger Institute, IBM-Annotation, BCM-HGSC, ORNL, NISC-NIH, Ensembl, J. Craig Venter Institute, Washington Univ Sanger Institute, BCM-HGSC, International Collaboration, Genoscope, Washington Univ NIH Nature 420, 520-62 December 5, 2002 Gibbs R Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas putida BACTERIAL Pseudomonas putida KT2440 113525 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental None Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Derived from a toluene-degrading isolate International 61.5 Public Gc00111 000499_GCAT 160488 267 637000222 6181 5501 1 0 NC_002947 NCBI, J. Craig Venter Institute, Pseudomonas Genome DBase J. Craig Venter Institute, German Consortium DOE, BMBF Env Microbiology 4, 799-808 December 3, 2002 Nelson KE Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma penetrans BACTERIAL Mycoplasma penetrans HF-2 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Respiratory infection, Urogenital infection Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 Japan 25.7 Public Gc00110 76821 000500_GCAT 272633 176 637000182 1358 1104 1 0 NC_004432 NCBI, J. Craig Venter Institute, Molligen, NIH-NET NIID, RIKEN, Kitasato Univ JSPS NAR 30, 5293-5300 December 1, 2002 Sasaki Y Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus mutans BACTERIAL Streptococcus mutans UA159 C 118212 ATCC 700610 Genome FIRMICUTES Complete Complete and Published Dental Pathogen, Human Pathogen, Medical Dental caries Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 37 Child with active dental caries in 1982 USA 36.8 Public Gc00109 000501_GCAT 210007 333 637000288 2030 2135 1 0 NC_004350 NCBI, J. Craig Venter Institute, Univ of Oklahoma, Microgen Ohio State Univ, Univ of Oklahoma NIH-NIDCR PNAS 99,14434-14439 October 29, 2002 Ferretti,J.J Bacteria Actinobacteria Bifidobacteriales Actinobacteria (class) Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum NCC2705 NCC2705 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological, Food industry None Host, Intestinal microflora Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 - 41 Infant feces International 60.1 Public Gc00108 327509 000502_GCAT 206672 328 637000031 2256 1813 1 1 NC_004307, AE014295 NCBI, J. Craig Venter Institute Univ of Georgia, Nestle Nestle PNAS 99,14422-14427 October 29, 2002 Schell MA Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Wigglesworthia Wigglesworthia glossinidia BACTERIAL Wigglesworthia glossinidia P-endosymbiont Glossina brevipalpis Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Evolutionary None Endosymbiont, Host, Insect endosymbiont Mesophile International 22 Public Gc00107 141977 000503_GCAT 36870 274 637000338 697 699 1 1 NC_004344 NCBI, J. Craig Venter Institute RIKEN, Kitasato Univ, Yale Univ NIH, JSPS Nature Genetics 32,402-407 October 24, 2002 Aksoy S Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Shigella Shigella flexneri BACTERIAL Shigella flexneri 301 2a Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Dysenteria, Food poisoning, Shigellosis Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 In 1984 from a patient in Beijing China China 50.9 Public Gc00106 128448 000504_GCAT 198214 310 637000264 4607 4873 1 1 NC_004337 NCBI, J. Craig Venter Institute Microbial Genome Center, Beijing Chinese Ministry of Public Health NAR 30, 4432-4441 October 16, 2002 Jin Q Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella oneidensis BACTERIAL Shewanella oneidensis MR-1 121993 ATCC 700550 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water, Sediment Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Mesophile "Sediment; anaerobic; Mn(IV) reduction, Oneida lake in New York" USA 46 Public Gc00105 57778 000505_GCAT 211586 335 637000258 4969 4673 1 1 NC_004347 NCBI, J. Craig Venter Institute J. Craig Venter Institute DOE Nature Biotechnology 20, 1118-1123 October 7, 2002 Heidelberg JF Eukaryota Arthropoda Diptera Insecta Culicidae Anopheles Anopheles gambiae EUKARYAL Anopheles gambiae PEST Sanger 10x Genome ARTHROPODA Quality Draft Complete and Published Mesophile International 44 Public Gc00104 000506_GCAT 180454 1438 639591500 278000 13683 5 0 AAAB01000000 NCBI, J. Craig Venter Institute, Genoscope, Institut Pasteur Celera Genomics, Genoscope NIH-NIAID Science 298, 129-149 October 4, 2002 AnoDB Eukaryota Apicomplexa Haemosporida Aconoidasida Plasmodium Plasmodium yoelii EUKARYAL Plasmodium yoelii yoelii 17XNL Sanger 5x Genome PROTISTS-APICOMPLEXA Quality Draft Complete and Published Animal Pathogen, Medical, Rodent Pathogen Malaria Host Mesophile USA 22.6 Public Gc00103 000507_GCAT 352914 1436 640281013 20086 7910 14 0 AABL01000000 NCBI, PlasmoDB, J. Craig Venter Institute NMRC, J. Craig Venter Institute DOD Nature 419, 512-519 October 3, 2002 Carlton JM Eukaryota Apicomplexa Haemosporida Aconoidasida Plasmodium Plasmodium falciparum EUKARYAL Plasmodium falciparum 3D7 Sanger Genome PROTISTS-APICOMPLEXA Complete Complete and Published Human Pathogen, Medical Malaria Host Mesophile International 19.4 Public Gc00102 000508_GCAT 36329 13173 638269502 22859 5268 14 0 NC_004314-31 NCBI, Sanger Institute, IBM-Annotation, PlasmoDB, J. Craig Venter Institute, Stanford Malaria Genome Project Consortium NIH-NIAID, Burroughs Wellcome Fund, Wellcome Trust, MRMC, Naval Medical Research Center Nature 419, 498-511 October 3, 2002 Gardner MJ Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella suis BACTERIAL Brucella melitensis bv suis 1330 1 675075 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Brucellosis, Fever, Infectious abortions Host Aerobe Nonmotile Nonsporulating Mesophile 37 Swine isolate USA 57.3 Public Gc00101 56114 000509_GCAT 204722 320 637000042 3310 3417 2 0 NC_004310, AE014291, AE014292, NC_004311 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID, DARPA PNAS 99, 13148-13153 October 1, 2002 Paulsen I Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae NEM316 III/III Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Meningitis Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 37 Case of fatal septicemia France 35.6 Public Gc00100 128729 000510_GCAT 211110 334 637000287 2211 2268 1 0 NC_004368 NCBI, J. Craig Venter Institute, SagaList Institut Pasteur MENRT Mol Microbiol 45, 1499-513 September 30, 2002 Kunst F Bacteria Firmicutes Bacillales Bacilli Bacillaceae Oceanobacillus Oceanobacillus iheyensis BACTERIAL Oceanobacillus iheyensis HTE831 303306 DSM 14371, JCM 11309 Genome FIRMICUTES Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Motile Sporulating Mesophile 30 Halotolerant Deep sea mud at 1050m depth from the Iheya ridge near Okinawa Japan in 1998 Japan 35.7 Public Gc00099 14611 000511_GCAT 221109 284 637000201 3630 3736 1 0 NC_004193 NCBI, ExtremoBase, J. Craig Venter Institute JAMSTEC NAR 30, 3927-3935 September 7, 2002 Takami H Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus agalactiae BACTERIAL Streptococcus agalactiae 2603V/R V/V 494127 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Meningitis, Pneumonia, Septicemia Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 37 USA 35.6 Public Gc00098 55977 000512_GCAT 208435 330 637000285 2160 2344 1 0 NC_004116 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID PNAS 99, 12391-12396 August 28, 2002 Tettelin HS Eukaryota Chordata Tetraodontiformes Actinopterygii Tetraodontidae Takifugu EUKARYAL Takifugu rubripes Genome CHORDATA-FISH Quality Draft Complete and Published Evolutionary None Mesophile International Public Gc00097 000513_GCAT 31033 1434 400000 22000 CAAB01000000 NCBI, Sanger Institute, Fugu Genome Consortium, DOE Joint Genome Institute, HGMP-RC DOE Joint Genome Institute, International Collaboration DOE, MRC Science 297, 1301-10 August 22, 2002 Aparicio S Bacteria Cyanobacteria Chroococcales Thermosynechococcus Thermosynechococcus elongatus BACTERIAL Thermosynechococcus elongatus BP-1 Genome CYANOBACTERIA Complete Complete and Published Biotechnological None Fresh water, Hot spring Rod-shaped Photoautotroph, Photosynthetic Thermophile 55 Beppu hot spring in Japan Japan 53.9 Public Gc00096 107856 000514_GCAT 197221 308 637000320 2593 2557 1 0 NC_004113 NCBI, Kazusa, J. Craig Venter Institute Kazusa DNA Research Institute KDRI DNA Res 9, 123-30 August 19, 2002 Kaneko, T Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Mediaevalis KIM10+ Mediaevalis Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Bubonic plague Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 28 - 30 USA 47.6 Public Gc00095 63174 000515_GCAT 187410 288 637000352 4600 4391 1 1 NC_004088 NCBI, Univ of Wisconsin, J. Craig Venter Institute Univ of Wisconsin NIH-NIAID J. Bacteriol 184, 4601-4611 July 29, 2002 Blattner FR Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes MGAS315 M3 352256 ATCC BAA-595 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Rheumatic fever Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 30 - 35 USA 38.6 Public Gc00094 73813 000516_GCAT 198466 311 637000296 1900 2053 1 0 NC_004070 NCBI, J. Craig Venter Institute RML-NIAID, Univ of Minnesota NIH PNAS 99, 10078-10083 July 16, 2002 Musser JM Archaea Euryarchaeota Methanosarcinales Methanomicrobia Methanosarcinaceae Methanosarcina Methanosarcina mazei ARCHAEAL Methanosarcina mazei Go1 OCM 88 118991 ATCC BAA-199, DSMZ 3647 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Carbon cycle, Energy production, Environmental None Feces, Mud, Sludge, Soil 5.5 - 8 Anaerobe Coccus-shaped Nonmotile Nonsporulating Lithotroph Mesophile 30 - 40 International 41.5 Public Gc00093 129054 000517_GCAT 192952 300 638154509 4096 3526 1 0 NC_003901 NCBI, Goettingen Genomics Laboratory, J. Craig Venter Institute, Integr8 Goettingen Genomics Laboratory, Integrated Genomics Inc Ministry of Lower Saxony, MWK J. Mol. Micro. Biotechnol. 4, 453-461 July 10, 2002 Gottschalk G Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chlorobaculum Chlorobaculum tepidum BACTERIAL Chlorobium tepidum TLS 162992 ATCC 49652, DSM 12025 Genome CHLOROBI Complete Complete and Published Biotechnological, Environmental, Global carbon cycle None Fresh water, Hot spring Obligate anaerobe Rod-shaped Chains, Singles Nonmotile Nonsporulating Photolithoautotroph, Photosynthetic Thermophile 48 New Zealand high-sulfide hot spring USA 56.5 Public Gc00092 143083 000518_GCAT 194439 302 637000073 2154 2369 1 0 NC_002932, AE006470 NCBI, Kazusa, J. Craig Venter Institute J. Craig Venter Institute DOE PNAS 99, 9509-9514 July 9, 2002 Eisen JA Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola SG Schizaphis graminum Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Endosymbiont, Host, Insect endosymbiont Mesophile Sweden 25.3 Public Gc00091 148394 000519_GCAT 198804 312 637000045 641 622 1 0 NC_004061, AE013218 NCBI, J. Craig Venter Institute Univ of Uppsala NSF Science 296, 2376-2379 June 28, 2002 Andersson SG Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MW2 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Staphylococcal scarlet fever, Toxic-shock syndrome Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Japan 32.8 Public Gc00090 143465 000520_GCAT 196620 306 637000276 2820 2763 1 0 NC_003923 NCBI, J. Craig Venter Institute, NITE Juntendo Univ, NITE NITE Lancet 359, 1819-1827 May 25, 2002 Hiramatsu K Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas axonopodis BACTERIAL Xanthomonas axonopodis pv. citri XV101, 306 97208 ATCC 13902 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Citrus canker Host Aerobe Rod-shaped Motile Mesophile 25 - 30 Brazil 64.8 Public Gc00089 66133 000521_GCAT 190486 297 637000342 5175 4498 1 2 NC_003919 NCBI, J. Craig Venter Institute FAPESP, Univ of Campinas, Univ of Sao Paulo FAPESP Nature 417, 459-463 May 23, 2002 da Silva AC Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris ATCC 33913 campestris 23358 ATCC 33913, NCPPB 528 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Black rot Host Aerobe Rod-shaped Motile Mesophile 25 - 30 Cabbage Brazil 65.1 Public Gc00088 66211 000522_GCAT 190485 296 637000344 5076 4253 1 0 NC_003902 NCBI, J. Craig Venter Institute, Univ of Sao Paulo FAPESP, Univ of Sao Paulo FAPESP Nature 417, 459-463 May 23, 2002 da Silva AC Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Streptomycetaceae Streptomyces Streptomyces coelicolor BACTERIAL Streptomyces coelicolor A3(2) M145 684630 Genome ACTINOBACTERIA Complete Complete and Published Antibiotic production, Biotechnological None Soil Aerobe Filament-shaped Nonmotile Sporulating Mesophile 25 - 35 Derivative of the laboratory strain A3(2) United Kingdom 72.1 Public Gc00087 57771 000523_GCAT 100226 242 637000305 8667 8319 1 2 NC_003888 NCBI, Sanger Institute, J. Craig Venter Institute Sanger Institute, John Innes Centre, IGF Beowulf Genomics, BBSRC Nature 417, 141-147 May 9, 2002 Bentley SD Bacteria Firmicutes Thermoanaerobacterales Clostridia Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter tengcongensis BACTERIAL Thermoanaerobacter tengcongensis MB4T / JCM 11007 304063 JCM 11007 Genome FIRMICUTES Complete Complete and Published Biotechnological None Fresh water, Hot spring Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Hyperthermophile 75 Hot spring in Tengcong China China 37.6 Public Gc00086 66681 000524_GCAT 273068 249 637000318 2689 2726 1 0 NC_003869 NCBI, GIB, J. Craig Venter Institute The Institute of Microbiology, China, Beijing Genomics Institute Genome Res. 5, 689-700 May 7, 2002 Yang H Bacteria Fusobacteria Fusobacteriales Fusobacteria (class) Fusobacteriaceae Fusobacterium Fusobacterium nucleatum BACTERIAL Fusobacterium nucleatum nucleatum ATCC 25586 31256 ATCC 25586 Genome FUSOBACTERIA Complete Complete and Published Human Pathogen, Medical Periodontal infection Host, Oral microflora Anaerobe Filament-shaped Nonmotile Nonsporulating Mesophile 37 Cervico-facial lesion USA 27 Public Gc00085 129147 000525_GCAT 190304 295 637000117 2170 2197 1 0 NC_003454, AE009951 NCBI, J. Craig Venter Institute Integrated Genomics Inc NIH J Bacteriol 184, 2005-2018 April 10, 2002 Kapatral V Archaea Euryarchaeota Methanosarcinales Methanomicrobia Methanosarcinaceae Methanosarcina Methanosarcina acetivorans ARCHAEAL Methanosarcina acetivorans C2A 124586 ATCC 35395, DSM 2834 Genome EURYARCHAEOTA-METHANOMICROBIA Complete Complete and Published Biotechnological, Carbon cycle, Energy production, Environmental None Hydrothermal vent, Marine, Oil fields 6.5 - 7 Anaerobe Coccus-shaped Nonmotile Nonsporulating Lithotroph Mesophile 35 - 40 Marine sediment USA 42.7 Public Gc00084 146413 000526_GCAT 188937 290 638154508 5751 4853 1 0 NC_003552 NCBI, J. Craig Venter Institute, Integr8, Broad Institute Univ of Illinois at Urbana-Champaign, Broad Institute Genome Res. 12, 532-542 April 10, 2002 Galagan JE Eukaryota Streptophyta Poales Liliopsida Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa L. ssp. indica Sanger 6x Genome PLANTS-STREPTOPHYTA Quality Draft Complete and Published Agricultural, Model organism Mesophile China Public Gc00083 000527_GCAT 39946 361 420000 50000 12 0 AAAA01000000 NCBI, RiceGD Chinese Academy of Sciences, Beijing Genomics Institute, Zhejiang Univ Chinese Academy of Sciences, NSFC Science 296, 79-92 April 5, 2002 Yang H Eukaryota Streptophyta Poales Liliopsida Poaceae Oryza Oryza sativa EUKARYAL Oryza sativa ssp. japonica Genome PLANTS-STREPTOPHYTA Quality Draft Complete and Published Agricultural, Model organism Aerobe Mesophile USA Public Gc00082 000528_GCAT 39947 420000 50000 12 0 AACV01000000 NCBI Syngenta AG, Myriad Genetics Science 296, 92-100 April 5, 2002 Goff SA Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M18 MGAS8232 M18 494010 ATCC BAA-572 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Rheumatic fever Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 30 - 35 USA 38.5 Public Gc00081 129069 000529_GCAT 186103 286 637000299 1895 2033 1 0 NC_003485 NCBI, J. Craig Venter Institute RML-NIAID, Univ of Minnesota NIH PNAS 99, 4668-4673 April 2, 2002 Musser JM Archaea Euryarchaeota Methanopyrales Methanopyri Methanopyraceae Methanopyrus Methanopyrus kandleri ARCHAEAL Methanopyrus kandleri AV19 159947 DSM 6324 Genome EURYARCHAEOTA-METHANOPYRI Complete Complete and Published Biotechnological, Carbon cycle, Energy production, Environmental None Marine 5.5 - 7 Anaerobe Rod-shaped Nonsporulating Lithotroph Hyperthermophile 80 - 101 Black smoker from the Gulf of California at a depth of 2000m USA 61.2 Public Gc00080 64372 000530_GCAT 190192 294 638154507 1694 1768 1 0 NC_003551 NCBI, J. Craig Venter Institute, Integr8 Fidelity Systems Inc DOE, NIH PNAS 99, 4644-4649 April 2, 2002 Slesarev AI Eukaryota Ascomycota Schizosaccharomycetales Schizosaccharomycetes Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces pombe EUKARYAL Schizosaccharomyces pombe 972h 8x 579442 Genome FUNGI-ASCOMYCOTA Complete Complete and Published Model organism Mesophile United Kingdom 36 Public Gc00079 000531_GCAT 284812 13836 638208610 12533 5004 3 0 NC_003421-4 NCBI, Sanger Institute, GeneDB, Cold Spring Harbor Laboratory, J. Craig Venter Institute Sanger Institute, Cold Spring Harbor Laboratory Cancer Research UK, European Union, Wellcome Trust Nature 415,871-80 February 21, 2002 Rajandream MA Archaea Euryarchaeota Thermococcales Thermococci Thermococcaceae Pyrococcus Pyrococcus furiosus ARCHAEAL Pyrococcus furiosus JCM 8422 158448 ATCC 43587, DSM 3638 Genome EURYARCHAEOTA-THERMOCOCCI Complete Complete and Published Biotechnological None Marine 5 - 9 Obligate anaerobe Coccus-shaped Motile Nonsporulating Hyperthermophile 70 - 103 Shallow marine solfataric region at Vulcano Island Italy USA 40.8 Public Gc00078 108031 000532_GCAT 186497 287 638154515 1908 2180 1 0 NC_003413 NCBI, J. Craig Venter Institute, Integr8 Univ of Utah, Univ of Maryland DOE Meth. Enzymol. 330:134-57 February 12, 2002 Robb FT Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Ralstonia Ralstonia solanacearum BACTERIAL Ralstonia solanacearum GMI1000 692465 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Plant Pathogen Plant rot, Wilting disease Soil Aerobe Rod-shaped Motile Heterotroph Mesophile France 67 Public Gc00077 158870 000533_GCAT 267608 13 637000231 3716 5205 1 1 NC_003295 NCBI, GIB, J. Craig Venter Institute, Genoscope CNRS, INRA, Genoscope CNRS, INRA Nature 415,497-502 January 31, 2002 Boucher CA Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium perfringens BACTERIAL Clostridium perfringens 13 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical, Poultry Pathogen, Swine Pathogen Enteritis necroticans, Food poisoning, Gas gangrene, Necrotizing enterocolitis Host, Soil Anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile 37 Soil isolate Japan 28.6 Public Gc00076 54809 000534_GCAT 195102 79 637000079 3031 3020 1 1 NC_003366 NCBI, GIB, J. Craig Venter Institute, ClostriDB Kyushu Univ, Kitasato Univ, Univ of Tsukuba JSPS PNAS 99, 996-1001 January 22, 2002 Shimizu T Archaea Crenarchaeota Thermoproteales Thermoprotei Thermoproteaceae Pyrobaculum Pyrobaculum aerophilum ARCHAEAL Pyrobaculum aerophilum IM2 267735 ATCC 51768, DSM 7523 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Marine 7 Facultative Rod-shaped Motile Nonsporulating Autotroph Hyperthermophile 74 - 104 "Boiling marine water hole in Maronti Beach, Ischia, Italy" USA 51.4 Public Gc00075 000535_GCAT 178306 172 638154513 2222 2659 1 0 NC_003364 NCBI, GIB, J. Craig Venter Institute, Integr8 UCLA, CalTech DOE, NIH, ONR PNAS 99,984-989 January 22, 2002 Miller JH Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella melitensis BACTERIAL Brucella melitensis 16M 1 129462 ATCC 23456 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Brucellosis Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Infected goat USA 57.2 Public Gc00074 49775 000536_GCAT 224914 180 637000040 3294 3345 2 0 AE008917, NC_003317, NC_003318, AE008918 NCBI, GIB, J. Craig Venter Institute, Univ of Scranton Integrated Genomics Inc, Univ of Scranton DARPA PNAS 99,443-448 January 8, 2002 DelVecchio VG Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Agrobacterium Agrobacterium tumefaciens BACTERIAL Agrobacterium tumefaciens C58-UWash 267471 ATCC 33970 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Plant Pathogen Plant tumors Host, Root nodule Aerobe Rod-shaped Motile Mesophile 25 - 28 USA 59 Public Gc00073 128547 000537_GCAT 176299 282 639279302 4915 5491 2 2 NC_003304, NC_003305 NCBI, GIB, Univ of Washington, J. Craig Venter Institute DuPont, Univ of Washington, Univ of Campinas NSF, NIH Science 294,2317-2323 December 14, 2001 Nester EW Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Agrobacterium Agrobacterium tumefaciens BACTERIAL Agrobacterium tumefaciens C58-Cereon 1 267471 ATCC 33970 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Plant Pathogen Plant tumors Host, Root nodule Aerobe Rod-shaped Motile Mesophile 25 - 28 Cherry tree tumor USA 59 Public Gc00072 128547 000538_GCAT 176299 283 639279301 4915 5443 2 2 NC_003063, AE007869, NC_003062 NCBI, GIB, J. Craig Venter Institute Univ of Richmond, Monsanto, Cereon Genomics NSF, NIH, Cereon Genomics Science 294,2323-2328 December 14, 2001 Slater S Eukaryota Microsporidia Unikaryonidae Encephalitozoon Encephalitozoon cuniculi EUKARYAL Encephalitozoon cuniculi GB-M1 Sanger Genome FUNGI-MICROSPORIDIA Quality Draft Complete and Published Human Pathogen, Medical Mesophile France 48 Public Gc00071 000539_GCAT 284813 13833 638208606 2900 1996 11 0 NC_003229-42 NCBI, Genoscope Univ Blaise Pascal, Genoscope CNRS Nature 414, 450-453 November 22, 2001 Vivares C Bacteria Cyanobacteria Nostocales Nostocaceae Nostoc BACTERIAL Nostoc sp. PCC 7120 106103 PCC 7120 Genome CYANOBACTERIA Complete Complete and Published Biotechnological None Soil Aerobe Filament-shaped Motile Mesophile International 41.3 Public Gc00070 53707 000540_GCAT 103690 244 637000199 6413 6233 1 6 NC_003272 NCBI, CyanoList, GIB, Kazusa, J. Craig Venter Institute Kazusa DNA Research Institute, Michigan State Univ DOE, KDRI DNA Res. 8,205-213 October 31, 2001 Kaneko, T Bacteria Firmicutes Bacillales Bacilli Listeriaceae Listeria Listeria monocytogenes BACTERIAL Listeria monocytogenes EGD-e 1/2a Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Medical, Poultry Pathogen, Swine Pathogen Food poisoning, Listeriosis Food, Fresh water, Intestinal microflora, Soil Facultative Rod-shaped Singles, Chains Motile Nonsporulating Chemoorganotroph Mesophile 30 - 37 EGD derivative European Consortium 38 Public Gc00069 53770 000541_GCAT 169963 276 637000153 2944 3009 1 0 NC_003210, AL591824 NCBI, ListiList, GIB, J. Craig Venter Institute, Institut Pasteur EC Concortium European Union Science 294,849-852 October 26, 2001 Cossart P Bacteria Firmicutes Bacillales Bacilli Listeriaceae Listeria Listeria innocua BACTERIAL Listeria innocua Clip11262, rhamnose-negative 6a 494327 Genome FIRMICUTES Complete Complete and Published Medical None Soil Facultative Rod-shaped Singles, Chains Motile Nonsporulating Chemoorganotroph Mesophile 30 - 37 European Consortium 37.4 Public Gc00068 54496 000542_GCAT 272626 86 637000152 3011 3214 1 1 NC_003212, AL592022 NCBI, ListiList, GIB, J. Craig Venter Institute, KEGG EC Concortium European Union, Institut Pasteur Science 294,849-852 October 26, 2001 Cossart P Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella typhimurium BACTERIAL Salmonella enterica Typhimurium LT2 SGSC1412 / LT2 Typhimurium LT2 118393 ATCC 700720 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 1940s by Lilleengen USA 52.2 Public Gc00067 17230 000543_GCAT 99287 241 637000255 4857 4760 1 1 NC_003197 NCBI, GIB, J. Craig Venter Institute Washington Univ NIH Nature 413,852-856 October 25, 2001 McClelland M Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Typhi CT18 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen strictly, Medical Food poisoning, Salmonellosis, Typhoid fever Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 United Kingdom 52.1 Public Gc00066 000544_GCAT 220341 236 637000254 4809 5112 1 2 NC_003198 NCBI, Sanger Institute, GIB, J. Craig Venter Institute Sanger Institute, Imperial College Beowulf Genomics Nature 413,848-852 October 25, 2001 Parkhill J Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae R6 269575 ATCC BAA-255 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Pneumonia Host, Nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 30 - 35 USA 39.7 Public Gc00065 48329 000545_GCAT 171101 278 637000289 2038 2209 1 0 NC_003098 NCBI, GIB, Eli Lilly, J. Craig Venter Institute, StreptoPneumoList Eli Lilly Eli Lilly J Bacteriol. 183,5709-5717 October 10, 2001 Glass JI Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Orientalis CO-92 Orientalis Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bubonic plague Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 28 - 30 Patientin the USA who died of pneumonic plague after acquiring the disease from an infected cat United Kingdom 47.6 Public Gc00064 57521 000546_GCAT 214092 34 637000351 4653 4292 1 3 NC_003143 NCBI, Sanger Institute, IBM-Annotation, GIB, J. Craig Venter Institute, KEGG Sanger Institute, Imperial College, MDS, DSTL Beowulf Genomics Nature 413,523-527 October 4, 2001 Parkhill J Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis CDC1551 (Oshkosh) Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 Clothing factory worker from the Kentucky/Tennessee USA 65.6 Public Gc00063 54279 000547_GCAT 83331 223 637000172 4403 4346 1 0 AE000516, NC_002755 NCBI, GIB, J. Craig Venter Institute J. Craig Venter Institute NIH J Bacteriol 184, 5479-90 October 2, 2001 Fleischmann RD Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia conorii BACTERIAL Rickettsia conorii Malish 7 621673 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Rocky Mountain Spotted Fever Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile Human in South Africa France 32.4 Public Gc00062 44963 000548_GCAT 272944 42 637000243 1268 1419 1 0 NC_003103 NCBI, GIB, J. Craig Venter Institute, Genoscope Genoscope Aventis Science 293,2093-2098 September 14, 2001 Raoult D Archaea Crenarchaeota Sulfolobales Thermoprotei Sulfolobaceae Sulfolobus Sulfolobus tokodaii ARCHAEAL Sulfolobus tokodaii 7, JCM 10545 304006 JCM 10545 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological, Wastewater treatment None Fresh water, Hot spring 2.5 - 3 Aerobe Coccus-shaped Nonmotile Nonsporulating Lithotroph Hyperthermophile 80 Beppu Hot Springs in the geothermal area of Kyushu Island Japan Japan 32.8 Public Gc00061 46167 000549_GCAT 273063 246 638154519 2694 2982 1 0 NC_003106 NCBI, GIB, J. Craig Venter Institute, Integr8, NITE NITE NITE DNA Res. 8,123-40 August 31, 2001 Kawarabayasi Y Bacteria Firmicutes Clostridiales Clostridia Clostridiaceae Clostridium Clostridium acetobutylicum BACTERIAL Clostridium acetobutylicum ATCC 824D 7818 ATCC 824D, DSM 792 Genome FIRMICUTES Complete Complete and Published Acetone production, Biotechnological, Butanol production, Ethanol production None Soil Obligate anaerobe Rod-shaped Pairs, Singles Motile Sporulating Chemoorganotroph Mesophile Garden soil in Connecticut in USA in 1924 USA 30.9 Public Gc00060 16263 000550_GCAT 272562 77 637000076 3940 4123 1 1 AE001437, NC_003030 NCBI, GIB, J. Craig Venter Institute Genome Therapeutics DOE J.Bacteriol. 183,4823-4838 August 10, 2001 Smith DR Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Sinorhizobium Sinorhizobium meliloti BACTERIAL Sinorhizobium meliloti 1021 115196 Legumes Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile 25 - 30 Streptomycin resistant derivative of strain 2011 International 62.7 Public Gc00059 63996 000551_GCAT 266834 19 637000269 3654 6295 1 2 BA000012, NC_003047 NCBI, Stanford Univ, IBM-Annotation, GIB, J. Craig Venter Institute Stanford Univ, European Union European & Canadian Consortium Science 293,668-672 July 27, 2001 Long SR Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pneumoniae BACTERIAL Streptococcus pneumoniae TIGR4 4 352345 ATCC-BAA-334 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Meningitis, Otitis media, Pneumonia Host, Nasopharyngeal microflora Facultative Coccus-shaped Chains, Pairs Nonmotile Nonsporulating Mesophile 30 - 35 Blood of a 30 year old male patient in Kongsvinger Norway USA 39.7 Public Gc00058 129051 000552_GCAT 170187 277 637000290 2160 2365 1 0 NC_003028 NCBI, GIB, J. Craig Venter Institute, StreptoPneumoList J. Craig Venter Institute NIH-NIAID, MGRI Science 293,498-506 July 20, 2001 Fraser CM Archaea Crenarchaeota Sulfolobales Thermoprotei Sulfolobaceae Sulfolobus Sulfolobus solfataricus ARCHAEAL Sulfolobus solfataricus P2 267483 ATCC 35092, DSM 1617 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Fresh water 2 - 4.5 Obligate aerobe Coccus-shaped Singles Motile Nonsporulating Lithotroph Hyperthermophile 50 - 87 International 35.8 Public Gc00057 54467 000553_GCAT 273057 108 638154518 2992 3169 1 0 NC_002754 NCBI, IBM-Annotation, GIB, LBMGE, France, J. Craig Venter Institute Canadian Bioinformatics Resource, European Union National Research Council of Canada, European Union, Canadian Genome Analysis and Technology PNAS 98,7835-7840 July 3, 2001 Garrett RA Bacteria Proteobacteria Caulobacterales Alphaproteobacteria Caulobacteraceae Caulobacter Caulobacter vibrioides BACTERIAL Caulobacter crescentus CB15 123019 ATCC 19089 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biogeochemical, Bioremediation, Biotechnological, Environmental, Wastewater treatment None Fresh water, Marine, Soil Obligate aerobe Rod-shaped Singles Motile Mesophile 35 USA 67.2 Public Gc00056 137102 000554_GCAT 190650 298 637000061 4016 3867 1 0 AE005673, NC_002696 NCBI, GIB, J. Craig Venter Institute J. Craig Venter Institute DOE PNAS 98,4136-4141 May 22, 2001 Nierman WC Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma pulmonis BACTERIAL Mycoplasma pulmonis UAB CTIP Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Medical Genital infection, Respiratory infection Host Facultative Sphere-shaped Singles Motile Nonsporulating Mesophile 37 Laboratory strain France 26.6 Public Gc00055 49947 000555_GCAT 272635 100 637000184 963 853 1 0 NC_002771 NCBI, GIB, J. Craig Venter Institute, Molligen, MypuList, Genoscope Genoscope INRA, Genoscope, Institut Pasteur NAR 29, 2145-2153 May 15, 2001 Blanchard A Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Lactococcus Lactococcus lactis BACTERIAL Lactococcus lactis lactis IL1403 Genome FIRMICUTES Complete Complete and Published Biotechnological, Cheese production, Food industry None Host Facultative Coccus-shaped Nonmotile Nonsporulating Mesophile 40 Cheese starter culture France 35.3 Public Gc00054 128821 000556_GCAT 272623 72 637000144 2365 2507 1 0 NC_002662, AE005176 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute, INRA INRA, Genoscope INRA Genome Research 11, 731-753 May 10, 2001 Sorokin A Archaea Euryarchaeota Thermococcales Thermococci Thermococcaceae Pyrococcus Pyrococcus abyssi ARCHAEAL Pyrococcus abyssi GE5 Genome EURYARCHAEOTA-THERMOCOCCI Complete Complete and Published Biotechnological None Deep sea, Marine Obligate anaerobe Coccus-shaped Motile Nonsporulating Hyperthermophile 67 - 103 Active chimney in the North Fiji Basin of the Pacific Ocean at a depth of 3500m France 44.7 Public Gc00053 101303 000557_GCAT 272844 179 638154514 1765 2059 1 1 NC_000868 NCBI, IBM-Annotation, GIB, LBMGE, France, J. Craig Venter Institute, Integr8, Genoscope Genoscope, IGBMC CNRS, INSERM Genome Res 11, 981-93 May 8, 2001 Poch O Eukaryota Cryptophyta Cryptomonadaceae Guillardia Guillardia theta EUKARYAL Guillardia theta Genome PROTISTS-CRYPTOPHYTA Complete Complete and Published Model organism Mesophile International 26 Public Gc00052 000558_GCAT 55529 210 638269501 551 464 3 0 NCBI NCBI, IMB Philipps-Univ Marburg, Univ of British Columbia, Canadian Institute of Advanced Research NERC, DFG, NSERC Nature 410, 1091-1096 April 26, 2001 Cavalier-Smith T Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus Mu50 (VRSA) 118360 ATCC 700699 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Deep abscesses, Endocarditis, Mastitis, Meningitis, Nosocomial infection, Osteomyelitis, Phlebitis, Pneumonia Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Pus of a Japanese male baby with a surgical wound infection that did not respond to vancomycin in 1997 Japan 32.9 Public Gc00051 132800 000559_GCAT 158878 263 637000277 2878 2915 1 1 NC_002758 NCBI, Kyushu Univ, GIB, J. Craig Venter Institute, AureoList Univ of Tokyo, ONRI, Kyushu Univ, RIKEN, Kitasato Univ, Kyoto Univ, Juntendo Univ, Univ of Tsukuba, NITE JSPS, NITE The Lancet 357, 1225-1240 April 21, 2001 Hiramatsu K Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus N315 (MRSA) Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen Deep abscesses, Endocarditis, Mastitis, Meningitis, Nosocomial infection, Osteomyelitis, Phlebitis, Pneumonia Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 30 - 37 Pharyngeal smear of a Japanese patient in 1982 Japan 32.8 Public Gc00050 138516 000560_GCAT 158879 264 637000278 2813 2746 1 1 NC_002745 NCBI, GIB, J. Craig Venter Institute, AureoList, NITE Univ of Tokyo, ONRI, Kyushu Univ, RIKEN, Kitasato Univ, Kyoto Univ, Juntendo Univ, Univ of Tsukuba, NITE NITE The Lancet 357,1225-1240 April 21, 2001 Hiramatsu K Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes GAS SF370 M1 117801 ATCC 700294 Genome FIRMICUTES Complete Complete and Published Human Pathogen strictly, Medical Mastoiditis, Otitis, Pharyngitis, Pneumonia, Rheumatic fever, Sinusitis, Tonsillitis Host, Nasopharyngeal microflora Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 30 - 35 Patient with a wound infection USA 38.5 Public Gc00049 48689 000561_GCAT 160490 269 637000291 1852 1903 1 0 NC_002737 NCBI, GIB, Univ of Oklahoma, Microgen Univ of Oklahoma NIH-NIAID PNAS 98,4658-4663 April 10, 2001 Ferretti JJ Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Pasteurella Pasteurella multocida BACTERIAL Pasteurella multocida Pm70 type A 3 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical, Poultry Pathogen, Swine Pathogen Cholera, Pasteurellosis, Septicemia Host Facultative Rod-shaped Nonmotile Mesophile 37 Case of cholera in chickens in 1995 USA 40.4 Public Gc00048 138365 000562_GCAT 272843 39 637000203 2257 2176 1 0 NC_002663 NCBI, GIB, J. Craig Venter Institute Univ of Minnesota USDA/NRI, MAES PNAS 98, 3460-3465 March 13, 2001 Kapur V Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Corynebacteriaceae Corynebacterium Corynebacterium glutamicum BACTERIAL Corynebacterium glutamicum Nakagawa, ATCC 13032 681595 ATCC 13032, DSM 20300 Genome ACTINOBACTERIA Complete Complete and Published Amino acids production, Biotechnological, Food industry, Glutamate production None Normal microflora, Soil Facultative Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 30 - 40 1957 by S. Kinoshita and colleagues while searching for an efficient glutamate-producer Japan 53.8 Public Gc00047 137433 000563_GCAT 196627 307 639279307 3309 3199 1 0 NC_003450 NCBI, J. Craig Venter Institute Kyowa Hakko Co, Kitasato Univ Kyowa Hakko Co Appl Microbiol Biotechnol 62, 99-109 March 12, 2001 Ikeda M Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 Sakai (EHEC) O157:H7 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Enterohaemorrhagic, Food poisoning, Hemorrhagic colitis Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 Outbreak in 1982 in Sakai Japan Japan 50.5 Public Gc00046 000564_GCAT 386585 226 637000108 5598 5565 1 1 NC_002695 NCBI, GIB, GIRC, J. Craig Venter Institute Japanese Consortium, RIKEN JSPS DNA Research 8, 11-22 February 27, 2001 Hayashi T Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium leprae BACTERIAL Mycobacterium leprae TN Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Hanson's disease, Leprosy Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 Armadillo in Tamil Nadu India European Consortium 57.8 Public Gc00045 108810 000565_GCAT 272631 90 637000170 3268 2749 1 0 AL450380, NC_002677 NCBI, Sanger Institute, GIB, J. Craig Venter Institute, PEDANT, Leproma Sanger Institute, Institut Pasteur The New York Community Trust, Amici di Raoul Follereau Nature 409, 1007-1011 February 22, 2001 Cole ST Eukaryota Chordata Primates Mammalia Hominidae Homo EUKARYAL Homo sapiens Genome CHORDATA-PRIMATES Quality Draft Complete and Published Aerobe Mesophile International 40.9 Public Gc00044 000566_GCAT 9606 9558 639332100 3080436 38612 24 0 24 Chromosomes NCBI, Sanger Institute, IBM-Annotation, ORNL, Ensembl, J. Craig Venter Institute, HOWDY International Collaboration Wellcome Trust Nature 409,860-921 February 15, 2001 Lander ES Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EDL933, EHEC 118705 ATCC 700927 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biothreat, Human Pathogen, Medical Enterohaemorrhagic, Hamburger disease, Hemorrhagic colitis Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 25 - 35 Outbreak in 1982 USA 50.4 Public Gc00043 150513 000567_GCAT 155864 259 637000107 5528 5643 1 2 NC_002655, AE005174 NCBI, GIB, J. Craig Venter Institute Univ of Wisconsin NIH-NIAID, NIH-NHGRI Nature 409,529-533 January 25, 2001 Perna NT Archaea Euryarchaeota Thermoplasmatales Thermoplasmata Thermoplasmataceae Thermoplasma Thermoplasma volcanium ARCHAEAL Thermoplasma volcanium GSS1 304114 Genome EURYARCHAEOTA-THERMOPLASMATA Complete Complete and Published Biotechnological None Hydrothermal vent, Marine, Solfataric field 1 - 4 Facultative Rod-shaped Motile Nonsporulating Thermophile 33 - 67 Acidic hydrothermal vents on the shore of Aeolian Island of Vulcano Italy Japan 39.9 Public Gc00042 47351 000568_GCAT 273116 206 638154522 1584 1660 1 0 NC_002689 NCBI, GIB, AIST, J. Craig Venter Institute, Integr8 AIST JST PNAS 97, 14257-14262 December 19, 2000 Suzuki M Eukaryota Streptophyta Brassicales Brassicaceae Arabidopsis EUKARYAL Arabidopsis thaliana Columbia Genome PLANTS-STREPTOPHYTA Quality Draft Complete and Published Agricultural, Model organism Aerobe Mesophile International 36 Public Gc00041 000569_GCAT 3702 13190 639560100 119707 26735 5 0 5 chromosomes NCBI, GIB, Univ of Minnesota, Cold Spring Harbor Laboratory, J. Craig Venter Institute, Integr8, KAOS International Collaboration DOE, USDA, NSF, European Union, KDRI Nature 408,796-815 December 14, 2000 TIGR Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Phyllobacteriaceae Mesorhizobium Mesorhizobium loti BACTERIAL Mesorhizobium loti MAFF303099 373790 Lotus Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Environmental None Host Aerobe Rod-shaped Motile Mesophile Japan 62.7 Public Gc00040 128788 000570_GCAT 266835 18 637000159 7036 7361 1 2 NC_002678, NC_002679, NC_002682 NCBI, GIB, Kazusa, J. Craig Venter Institute Kazusa DNA Research Institute KDRI DNA Research 7, 331-338 December 10, 2000 Tabata S Archaea Euryarchaeota Halobacteriales Halobacteria Halobacteriaceae Halobacterium Halobacterium salinarum ARCHAEAL Halobacterium sp. NRC-1 118700 ATCC 700922 Genome EURYARCHAEOTA-HALOBACTERIA Complete Complete and Published Biotechnological None Fresh water, Ponds Aerobe Rod-shaped Motile Nonsporulating Chemoorganotroph Mesophile 42 Halophile USA 67.9 Public Gc00039 54099 000571_GCAT 64091 217 638154504 2014 2775 1 2 NC_002607 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute, Integr8 Univ of Washington- Seattle, Univ of Massachusetts NSF PNAS 97, 12176-12181 October 24, 2000 DasSarma S Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma urealyticum (parvum) sv 3, ATCC 700970 3 118778 ATCC 700970 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Meningitis, Pneumonia, Septicemia, Sexually transmitted disease, Supperative arthritis Host, Urogenital tract Facultative Sphere-shaped Singles Nonmotile Mesophile USA 25.5 Public Gc00038 48336 000572_GCAT 273119 101 637000332 751 691 1 0 NC_002162 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute, Univ of Alabama, Molligen Eli Lilly, Univ of Alabama, Perkin-Elmer NIH-NIAID Nature 407, 757-762 October 12, 2000 Glass JI Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa PAO1 154131 ATCC 15692 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Human Pathogen, Medical, Plant Pathogen Nosocomial infection Fresh water, Host, Soil, Wastewater Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 25 - 30 USA 66.6 Public Gc00037 59263 000573_GCAT 208964 331 637000218 6264 5742 1 0 NC_002516 NCBI, GIB, Pseudomonas.com, J. Craig Venter Institute Univ of Washington- Seattle, Chiron Corp. Cystic Fibrosis Foundation Nature 406,959-964 September 30, 2000 Olson MV Archaea Euryarchaeota Thermoplasmatales Thermoplasmata Thermoplasmataceae Thermoplasma Thermoplasma acidophilum ARCHAEAL Thermoplasma acidophilum DSM 1728 104667 DSM 1728 Genome EURYARCHAEOTA-THERMOPLASMATA Complete Complete and Published Biotechnological, Evolutionary None Solfataric field 0.5 - 4 Facultative Rod-shaped Motile Nonsporulating Thermophile 45 - 63 Self-heating coal refuse pile in southwestern Indiana Germany 46 Public Gc00036 47977 000574_GCAT 273075 110 638154521 1564 1580 NC_002578 NCBI, IBM-Annotation, GIB, Max Planck Institute, J. Craig Venter Institute, Integr8 Medigenomix, Max Planck Institute Nature 407, 508-513 September 28, 2000 Baumeister W Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Buchnera Buchnera aphidicola BACTERIAL Buchnera aphidicola APS Acyrthosiphon pisum Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Evolutionary None Endosymbiont, Host, Insect endosymbiont Mesophile Japan 26.3 Public Gc00035 47707 000575_GCAT 107806 245 637000043 640 649 1 2 NC_002528, BA000003 NCBI, GIB, RIKEN, J. Craig Venter Institute Univ of Tokyo, RIKEN Pro BRAIN, MEXT Nature 407, 81-86 September 7, 2000 Ishikawa H Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Vibrio Vibrio cholerae BACTERIAL Vibrio cholerae N16961, Biotype ElTor O1 111778 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Cholera, Diarrhea, Food poisoning Fresh water, Host, Intestinal microflora, Wastewater Facultative Curved-shaped Singles Motile Nonsporulating Heterotroph Mesophile 20 - 30 Epidemic outbreak in Bangladesh in 1971 USA 47.3 Public Gc00034 207349 000576_GCAT 243277 36 637000333 4037 4113 2 0 NC_002505, NC_002506 NCBI, GIB, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Nature 406,477-483 August 3, 2000 Fraser CM Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa CVC 8.1.b clone 9.a.5.c Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Citrus variegated chlorosis, Pierces disease Host Aerobe Rod-shaped Singles Mesophile 26 - 28 Infected twigs derived from the sweet orange strain Valencia in Brazil Brazil 52.7 Public Gc00033 50284 000577_GCAT 160492 271 637000348 2679 2901 1 2 NC_002488 NCBI, GIB, UNICAMP, J. Craig Venter Institute, ONSA ONSA FAPESP Nature 406,151-157 July 13, 2000 Setubal JC Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae J138 Genome CHLAMYDIAE Complete Complete and Published Human Pathogen, Medical Asthma, Bronchitis, Heart disease, Multiple sclerosis, Pharyngitis, Pneumonia, Respiratory infection Host, Pharyngeal mucosa Rod-shaped Nonmotile Mesophile 37 Pharyngeal mucosa of a 5 year old male patient with acute bronchitis in Japan in 1994 Japan 40.6 Public Gc00032 000578_GCAT 138677 257 637000070 1228 1116 1 0 NC_002491 NCBI, Kyushu Univ, GIB, J. Craig Venter Institute Yamaguchi Univ, Kyushu Univ, RIKEN JSPS NAR 28,2311-2314 June 15, 2000 Shirai M Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus halodurans BACTERIAL Bacillus halodurans C-125 267986 JCM9153 Genome FIRMICUTES Complete Complete and Published Alkaliphilic enzyme production, Biotechnological, Laundry detergents None Fresh water, Soil 9.5 Facultative Rod-shaped Motile Sporulating Mesophile 1977 Japan 43.7 Public Gc00031 54543 000579_GCAT 272558 235 637000020 4202 4326 1 0 NC_002570, BA000004 NCBI, ExtremoBase, GIB JAMSTEC Nucleic Acids Res 28, 4317-31 April 10, 2000 Takami H Bacteria Proteobacteria Neisseriales Betaproteobacteria Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis Z2491 A 401211 Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Meningitis, Septicemia Host, Nasopharyngeal microflora Aerobe Coccus-shaped Pairs Nonmotile Nonsporulating Mesophile 35 - 37 Gambia in 1983 United Kingdom 51.8 Public Gc00030 179942 000580_GCAT 122587 252 637000190 2184 2297 1 0 NC_003116 NCBI, Sanger Institute, IBM-Annotation, GIB, J. Craig Venter Institute Sanger Institute, Max Planck Institute, Univ of Oxford Wellcome Trust Nature 404,502-506 March 30, 2000 Parkhill J Eukaryota Arthropoda Diptera Insecta Drosophilidae Drosophila EUKARYAL Drosophila melanogaster y; cn bw sp Sanger Genome ARTHROPODA Quality Draft Complete and Published Model organism Aerobe Mesophile International 41 Public Gc00029 000581_GCAT 7227 13207 639538900 137000 14100 6 0 6 chromosomes NCBI, FlyBase-USA, IBM-Annotation, J. Craig Venter Institute, BGDP European DGP, BCM-HGSC, Celera Genomics, Univ of California, Berkeley European Union, Celera Genomics Science 287,2185-95 March 24, 2000 Gibbs R Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydia Chlamydia muridarum BACTERIAL Chlamydia muridarum MoPn / Nigg 302228 Genome CHLAMYDIAE Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bronchitis, Pharyngitis, Pneumonia, Respiratory infection Host Rod-shaped Nonmotile Mesophile International 40.3 Public Gc00028 151827 000582_GCAT 243161 229 637000062 1072 963 1 1 AE002160, NC_002620 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute J. Craig Venter Institute, Univ of Manitoba NIH-NIAID NAR 28,1397-1406 March 15, 2000 Fraser CM Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae AR39 Genome CHLAMYDIAE Complete Complete and Published Human Pathogen, Medical Asthma, Bronchitis, Heart disease, Multiple sclerosis, Pharyngitis, Pneumonia, Respiratory infection Host Rod-shaped Nonmotile Mesophile 37 University of Washington student with acute respiratory tract infection in 1983 International 40.6 Public Gc00027 112346 000583_GCAT 115711 247 637000068 1229 1197 1 0 AE002161, NC_002179 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute J. Craig Venter Institute, Univ of Manitoba NIH-NIAID NAR 28,1397-1406 March 15, 2000 Fraser CM Bacteria Proteobacteria Neisseriales Betaproteobacteria Neisseriaceae Neisseria Neisseria meningitidis BACTERIAL Neisseria meningitidis MC58 B 501419 Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Meningitis, Septicemia Host, Nasopharyngeal microflora Aerobe Coccus-shaped Pairs Nonmotile Nonsporulating Mesophile 35 - 37 Case of invasive infection. USA 51.5 Public Gc00026 128805 000584_GCAT 122586 251 637000189 2272 2297 1 0 NC_003112 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute J. Craig Venter Institute Chiron Corp. Science 287,1809-1815 March 10, 2000 Tettelin HS Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter jejuni BACTERIAL Campylobacter jejuni jejuni NCTC 11168 6328 NCTC 11168 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Poultry Pathogen Diarrhea, Food poisoning Host, Wastewater Microaerophilic Spiral-shaped Singles, Chains Motile Nonsporulating Heterotroph Mesophile Diarrheic patient in 1977 United Kingdom 30.5 Public Gc00025 137323 000585_GCAT 192222 8 637000055 1641 1757 1 0 AL111168, NC_002163 NCBI, Sanger Institute, IBM-Annotation, GIB, J. Craig Venter Institute Sanger Institute, Univ of Leicester, LSHTM Beowulf Genomics Nature 403,665-668 February 10, 2000 Parkhill J Bacteria Deinococcus-Thermus Deinococcales Deinococci Deinococcaceae Deinococcus Deinococcus radiodurans BACTERIAL Deinococcus radiodurans USUHS (R1) 681593 ATCC BAA-816 Genome THERMI Complete Complete and Published Bioremediation, Environmental None Soil Aerobe Coccus-shaped Nonmotile Chemoorganotroph Mesophile 30 - 37 USA 66.6 Public Gc00024 137205 000586_GCAT 243230 65 637000092 3060 3304 2 2 NC_001263, NC_001264, AE000513, AE001825 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute J. Craig Venter Institute DOE Science 286,1571-1577 November 19, 1999 Fraser CM Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Thermotoga Thermotoga maritima BACTERIAL Thermotoga maritima MSB8 112852 ATCC 43589, DSM 3109 Genome THERMOTOGAE Complete Complete and Published Biotechnological, Energy production, Evolutionary None Marine Anaerobe Rod-shaped Motile Nonsporulating Heterotroph Hyperthermophile 80 Geothermal marine area near Vulcano Italy USA 46.2 Public Gc00023 149602 000587_GCAT 243274 111 637000321 1860 1961 1 0 NC_000853 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute J. Craig Venter Institute DOE Nature 399,323-329 May 27, 1999 Fraser CM Archaea Crenarchaeota Desulfurococcales Thermoprotei Desulfurococcaceae Aeropyrum Aeropyrum pernix ARCHAEAL Aeropyrum pernix K1 267839 Genome CRENARCHAEOTA-THERMOPROTEI Complete Complete and Published Biotechnological None Coastal, Hydrothermal vent, Marine 5 - 9 Aerobe Sphere-shaped Motile Chemolithoautotroph, Heterotroph Hyperthermophile 70 - 100 Coastal solfataric thermal vent at Kodakara-Jima Island in Japan in 1993 Japan 56.3 Public Gc00022 000588_GCAT 272557 211 638154501 1669 2820 1 0 NC_000854 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute, Integr8, NITE NITE NITE DNA Research 6,83-101 April 30, 1999 Kawarabayasi Y Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydophila Chlamydophila pneumoniae BACTERIAL Chlamydophila pneumoniae CWL029 Genome CHLAMYDIAE Complete Complete and Published Human Pathogen, Medical Bronchitis, Heart disease, Pharyngitis, Pneumonia, Respiratory infection Host Rod-shaped Nonmotile Mesophile 37 USA 40.6 Public Gc00021 200415 000589_GCAT 115713 248 637000069 1230 1137 1 0 AE001363, NC_000922 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute Stanford Univ, Univ of California, Berkeley Incyte Nat Genet 21,385-389 April 10, 1999 Stephens RS Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori J99 582789 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Human Pathogen, Medical Gastric inflammation, Ulcer Host, Human stomach Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile 37 Patient with duodenal ulcer in USA in 1994 USA 38 Public Gc00020 000590_GCAT 85963 234 637000134 1643 1546 1 0 NC_000921, AE001439 NCBI, IBM-Annotation, GIB, PyloriGeneTM, J. Craig Venter Institute Astra, Genome Therapeutics Astra, Genome Therapeutics Nature 397,176-180 January 14, 1999 Alm RA Eukaryota Nematoda Rhabditida Chromadorea Rhabditidae Caenorhabditis EUKARYAL Caenorhabditis elegans Bristol N2 Sanger Genome NEMATODES Complete Complete and Published Model organism Aerobe Mesophile International 35 Public Gc00019 000591_GCAT 6239 13758 639507900 100272 23209 6 0 NC_003279-84 NCBI, Sanger Institute, IBM-Annotation, NEXTDB, Integr8, SWISS, Washington Univ Sanger Institute, Washington Univ MRC, NIH-NHGRI Science 282,2012-2018 December 11, 1998 WUSTL Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia prowazekii BACTERIAL Rickettsia prowazekii Madrid E Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biothreat, Human Pathogen, Medical Rocky Mountain Spotted Fever, Typhus Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile Typhus patient in Madrid Sweden 29 Public Gc00018 137270 000592_GCAT 272947 43 637000245 1111 911 1 0 NC_000963 NCBI, IBM-Annotation, GIB, J. Craig Venter Institute Univ of Uppsala NFR, SSF Nature 396,133-140 November 12, 1998 Kurland CG Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis D/UW-3/CX (sv D) D Genome CHLAMYDIAE Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bronchitis, Heart disease, Pharyngitis, Pneumonia, Respiratory infection, Trachoma, Venereal disease Host Rod-shaped Nonmotile Mesophile 37 USA 41.3 Public Gc00017 146817 000593_GCAT 272561 45 637000064 1042 984 1 0 AE001273, NC_000117 NCBI, Stanford Univ, IBM-Annotation, GIB, J. Craig Venter Institute Stanford Univ, Univ of California, Berkeley NIH-NIAID Science 282,754-759 October 23, 1998 Stephens RS Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum Nichols 55.7x Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Syphilis Host Anaerobe Spiral-shaped Singles Motile Nonsporulating Mesophile Neurosyphilitic patient in 1912 USA 52.8 Public Gc00016 147951 000594_GCAT 243276 5 637000328 1138 1139 1 0 NC_000919 NCBI, IBM-Annotation, GIB, BCM-HGSC, J. Craig Venter Institute BCM-HGSC, Univ of Texas, J. Craig Venter Institute NIH-NIAID Science 281,375-388 July 17, 1998 Weinstock G Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis BACTERIAL Mycobacterium tuberculosis H37Rv (lab strain) 104411 Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 Human-lung H37 isolate in 1934 United Kingdom 65.6 Public Gc00015 49893 000595_GCAT 83332 224 637000173 4411 4060 1 0 NC_000962 NCBI, Sanger Institute, IBM-Annotation, GIB, J. Craig Venter Institute, TubercuList Sanger Institute Wellcome Trust Nature 393,537-544 June 11, 1998 Cole ST Archaea Euryarchaeota Thermococcales Thermococci Thermococcaceae Pyrococcus Pyrococcus horikoshii ARCHAEAL Pyrococcus horikoshii OT3 163167 Genome EURYARCHAEOTA-THERMOCOCCI Complete Complete and Published Biotechnological None Hydrothermal vent, Marine 7 Obligate anaerobe Coccus-shaped Motile Nonsporulating Hyperthermophile 80 - 102 Hydrothermal vent at Okinawa Trough in the Pacific Ocean at a depth of 1395m Japan 41.9 Public Gc00014 762 000596_GCAT 70601 207 638154516 1738 2366 1 0 NC_000961 NCBI, IBM-Annotation, GIB, AIST, J. Craig Venter Institute, Integr8, NITE Univ of Tokyo, NITE NITE DNA Research 5,55-76 April 30, 1998 Kawarabayasi Y Bacteria Aquificae Aquificales Aquificae (class) Aquificaceae Aquifex Aquifex aeolicus BACTERIAL Aquifex aeolicus VF5 Genome AQUIFICAE Complete Complete and Published Biotechnological None Hot spring, Marine Facultative Nonmotile Chemolithoautotroph Hyperthermophile 96 USA 43.5 Public Gc00013 153906 000597_GCAT 224324 215 637000010 1551 1663 1 1 AE000657, NC_000918 NCBI, IBM-Annotation, J. Craig Venter Institute Univ of Illinois at Urbana-Champaign, Diversa DOE, Diversa Nature 392,353-358 March 26, 1998 Swanson RV Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi B31 267491 ATCC 35210 Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Lyme disease Host Aerobe Spiral-shaped Motile Mesophile Dilutional cloning from the original Lyme-disease tick isolate USA 28.6 Public Gc00012 4156 000598_GCAT 224326 3 637000036 910 1726 1 21 NC_001318, AE000783 NCBI, IBM-Annotation, J. Craig Venter Institute, BNL Brookhaven Natl Lab, J. Craig Venter Institute NIH Nature 390,580-586 December 11, 1997 Fraser CM Archaea Euryarchaeota Archaeoglobales Archaeoglobi Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus ARCHAEAL Archaeoglobus fulgidus VC-16 158735 ATCC 49558, DSM 4304 Genome EURYARCHAEOTA-ARCHAEOGLOBI Complete Complete and Published Biotechnological None Marine Obligate anaerobe Motile Chemolithoautotroph Hyperthermophile 60 - 95 Geothermally heated sea floor at Vulcano Island Italy USA 48.6 Public Gc00011 755 000599_GCAT 224325 104 638154502 2178 2519 1 0 NC_000917 NCBI, IBM-Annotation, J. Craig Venter Institute, Integr8 J. Craig Venter Institute, Univ of Illinois at Urbana-Champaign DOE Nature 390,364-370 November 27, 1997 TIGR Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus subtilis BACTERIAL Bacillus subtilis 168 103309 Genome FIRMICUTES Complete Complete and Published Biotechnological None Soil Facultative Rod-shaped Motile Sporulating Mesophile 25 - 35 X-ray irradiated strain in Marburg in 1947 International 43.5 Public Gc00010 128995 000600_GCAT 224308 76 637000022 4214 4408 1 0 NC_000964, AL009126 NCBI, IBM-Annotation, MICADO, J. Craig Venter Institute, SubtiList, SWISS Japanese Consortium, European Consortium EC Nature 390,249-256 November 20, 1997 Kunst F Archaea Euryarchaeota Methanobacteriales Methanobacteria Methanobacteriaceae Methanothermobacter Methanothermobacter thermautotrophicus ARCHAEAL Methanothermobacter thermoautotrophicus Delta H 157113 Genome EURYARCHAEOTA-METHANOBACTERIA Complete Complete and Published Biotechnological, Energy production None Sludge Obligate anaerobe Nonmotile Nonsporulating Autotroph, Lithotroph Thermophile 65 - 70 Sewage sludge in 1971 in Urbana Illinois USA 49.5 Public Gc00009 45830 000601_GCAT 187420 289 638154510 1751 1894 1 0 NC_000916 NCBI, IBM-Annotation, J. Craig Venter Institute, Integr8 Ohio State Univ, Genome Therapeutics DOE J.Bacteriology 179,7135-7155 November 10, 1997 Smith DR Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli K12- MG1655 113559 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Medical None Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 Patient in 1922 USA 50.8 Public Gc00008 24909 000602_GCAT 83333 225 637000106 4639 4612 1 0 NC_000913, U00096 NCBI, IBM-Annotation, EcoGene, J. Craig Venter Institute, SWISS, Colibri, EcoCyc Univ of Wisconsin NIH-NHGRI Science 277,1453-1474 September 5, 1997 Blattner FR Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Helicobacteraceae Helicobacter Helicobacter pylori BACTERIAL Helicobacter pylori 26695 579300 ATCC 700392 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Human Pathogen, Medical Gastric inflammation, Ulcer Host, Human stomach Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile 37 Patient in the United Kingdom who had gastritis before 1987 USA 38.9 Public Gc00007 200945 000603_GCAT 85962 233 637000132 1667 1666 1 0 AE000511, NC_000915 NCBI, IBM-Annotation, PyloriGeneTM, J. Craig Venter Institute J. Craig Venter Institute NIH Nature 388,539-547 August 7, 1997 Tomb JF Eukaryota Ascomycota Saccharomycetales Saccharomycetes Saccharomycetaceae Saccharomyces EUKARYAL Saccharomyces cerevisiae S288C Sanger 317495 Genome FUNGI-ASCOMYCOTA Complete Complete and Published Model organism Mesophile International 38.1 Public Gc00006 000604_GCAT 4932 13838 638208609 12069 5860 16 0 NC_001133-48 NCBI, Sanger Institute, GeneDB, IBM-Annotation, YPD, SGD, SWISS, ScGI, Genequiz International Collaboration NHGRI, RIKEN, EC, Wellcome Trust Nature 387,5-105 May 29, 1997 Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma pneumoniae BACTERIAL Mycoplasma pneumoniae M129 106752 ATCC 29342 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Pneumonia, Respiratory infection, Tracheobronchitis Host Facultative Sphere-shaped Singles Motile Nonsporulating Mesophile 37 Patient with atypical pneumonia Germany 40 Public Gc00005 108728 000605_GCAT 272634 99 637000183 816 736 1 0 NC_000912 NCBI, IBM-Annotation, ZMBH, J. Craig Venter Institute, Molligen Univ of Heidelberg DFG NAR 24,4420-4449 November 15, 1996 Herrmann R Archaea Euryarchaeota Methanococcales Methanococci Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii ARCHAEAL Methanocaldococcus jannaschii DSM 2661 112081 ATCC 43067, DSM 2661 Genome EURYARCHAEOTA-METHANOCOCCI Complete Complete and Published Biotechnological, Energy production None Hydrothermal vent, Marine 5.2 - 7 Obligate anaerobe Coccus-shaped Motile Nonsporulating Lithotroph Hyperthermophile 85 Deep-sea hydrothermal vent in 1982 USA 31.4 Public Gc00004 142640 000606_GCAT 243232 102 638154505 1664 1878 1 2 NC_001732, NC_000909, NC_001733 NCBI, IBM-Annotation, J. Craig Venter Institute, Integr8, Genequiz J. Craig Venter Institute, Univ of Illinois at Urbana-Champaign DOE, NASA, HGS Science 273,1058-1073 September 28, 1996 Venter CJ Bacteria Cyanobacteria Chroococcales Synechocystis BACTERIAL Synechocystis sp. PCC6803 123875 PCC6803 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental, Ocean carbon cycle None Fresh water, Fresh water Facultative Coccus-shaped Motile Photoautotroph, Photosynthetic Mesophile Freshwater lake in 1968 Japan 47.7 Public Gc00003 137040 000607_GCAT 1148 60 637000315 3573 3632 1 4 NC_000911 NCBI, CyanoList, IBM-Annotation, Kazusa, J. Craig Venter Institute, Genequiz Kazusa DNA Research Institute KDRI DNA Res 3,109-136 June 30, 1996 Tabata S Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma genitalium BACTERIAL Mycoplasma genitalium G-37 267448 ATCC 33530 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Non-gonococcal urethritis, Respiratory infection, Urogenital infection Host, Urogenital tract Facultative Sphere-shaped Singles Motile Nonsporulating Mesophile 37 Urethral specimen from a male patient with nongonococcal urethritis USA 31.7 Public Gc00002 149052 000608_GCAT 243273 97 637000176 580 564 1 0 NC_000908 NCBI, IBM-Annotation, J. Craig Venter Institute, Molligen, Genequiz J. Craig Venter Institute DOE, NIH, HGS Science 270,397-403 October 20, 1995 Fraser CM Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Haemophilus Haemophilus influenzae BACTERIAL Haemophilus influenzae Rd (KW20) 136115 ATCC 51907 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Bronchitis, Meningitis, Otitis, Septicemia, Sinusitis Host, Nasopharyngeal microflora Facultative Rod-shaped Nonmotile Mesophile 35 - 37 1890s during an influenza pandemic by Pfeiffer USA 38.1 Public Gc00001 149603 000609_GCAT 71421 219 637000126 1830 1774 1 0 L42023, NC_000907 NCBI, IBM-Annotation, J. Craig Venter Institute, SWISS, LANL, Genequiz J. Craig Venter Institute ACS, HGS Science 269,496-512 July 28, 1995 Venter CJ Bacteria Tenericutes Acholeplasmatales Mollicutes Acholeplasmataceae Acholeplasma Acholeplasma laidlawii BACTERIAL Acholeplasma laidlawii PG-8A Genome FIRMICUTES Complete Complete and Published Biotechnological None Host, Soil, Wastewater Facultative Coccus-shaped Nonmotile Mesophile 37 Russia 31 Public Gc00734 Gi01961 240846 002588_GCAT 441768 19259 641522601 1496 1426 1 0 NC_010163 NCBI RIPCM Unpublished December 12, 2007 Govorun VM Bacteria Proteobacteria Acidithiobacillales Gammaproteobacteria Acidithiobacillaceae Acidithiobacillus Acidithiobacillus ferrooxidans BACTERIAL Acidithiobacillus ferrooxidans ATCC 23270 ATCC 23270, NCIB 8455, DSM 14882 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioleaching, Bioremediation, Environmental None Acid mine drainage 2 Obligate anaerobe Rod-shaped Motile Nonsporulating Obligate chemoautolithotroph Mesophile Acid, bituminous coal mine effluent USA 56 Public Gc00911 Gi00003 000614_GCAT 243159 53 643348501 2900 3147 1 0 NC_011761 NCBI J. Craig Venter Institute DOE Unpublished December 19, 2008 Tettelin HS Bacteria Acidobacteria Acidobacteriales Acidobacteria (class) Acidobacteriaceae Acidobacterium Acidobacterium capsulatum BACTERIAL Acidobacterium capsulatum ATCC 51196 10x ATCC 51196 Genome ACIDOBACTERIA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Acid mine drainage, Fresh water, Soil Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph, Heterotroph Mesophile 30 Acidic mine drainage in Yanahara mine Okayama Japan USA 60.5 Public Gc00956 Gi00004 000616_GCAT 240015 1 4127 3492 1 0 NC_012483 NCBI Los Alamos National Laboratory, J. Craig Venter Institute NSF Appl Environ Microbiol. 75, 2046-2056 March 30, 2009 Kuske CR Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii AB0057 454, Sanger 25x 454, 1.7x Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Nosocomial infection, Pneumonia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoheterotroph, Heterotroph Mesophile Bloodstream infection of a patient at Walter Reed Army Medical Center. USA 40 Public Gc00885 Gi02526 363772 003252_GCAT 480119 21111 643348502 4050 3790 1 1 NC_011586 NCBI Case Western Reserve Univ Unpublished November 17, 2008 Bonomo R Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii SDF Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Nosocomial infection, Pneumonia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoheterotroph, Heterotroph Mesophile 37 Body lice collected from homeless people living in France France 39.2 Public Gc00730 Gi00742 266360 000637_GCAT 509170 13001 641522603 3421 3141 1 3 NC_010400 NCBI, Genoscope Genoscope PLoS One 3, e1805 February 26, 2008 Genoscope Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Moraxellaceae Acinetobacter Acinetobacter baumannii BACTERIAL Acinetobacter baumannii ACICU Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Nosocomial infection, Pneumonia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoheterotroph, Heterotroph Mesophile 37 Hospital strain Italy 39 Public Gc00810 Gi01666 000638_GCAT 405416 17827 642555102 3904 3841 1 2 NC_010611 NCBI CNR - National Research Council Antimicrob. Agents Chemother. in press April 15, 2008 Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae BACTERIAL Actinobacillus pleuropneumoniae JL03 3 Sanger 8.6x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Medical, Swine Pathogen Necrotizing pleuropneumonia Host, Respiratory tract Facultative Rod-shaped Pairs, Singles Nonmotile Mesophile 37 Lung of a pig from a Chinese commercial pig farm in 2003 China 41 Public Gc00708 Gi01949 269867 002575_GCAT 434271 19135 641522604 2242 2200 1 0 NC_010278 NCBI Huazhong Agricultural Univ NFSC PLoS ONE 3, e1450 January 16, 2008 Chen H Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus pyogenes BACTERIAL Streptococcus pyogenes M49, NZ131 M49 Sanger ATCC BAA-1633 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Glomerulonephritis Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile "Patient with acute glomerulonephritis and was provided by Diana Martin, New Zealand Communicable Diseases Center, Porirua, New Zealand" USA Public Gc00871 Gi02365 003093_GCAT 471876 20707 643348577 1815 1700 1 0 NC_011375 NCBI Washington Univ J. Bacteriology 190, 7773-85 October 16, 2008 Savic DJ Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia duttonii BACTERIAL Borrelia duttonii Ly Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Tick-borne relapsing fever Host Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile 2-year-old girl with tick-borne relapsing fever in Tanzania France 27 Public Gc00861 Gi01736 311337 000682_GCAT 412419 18231 643348518 931 820 1 16 NC_011229 NCBI Marseille-Nice Genopole PLoS Genetics September 15, 2008 Drancourt M Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia recurrentis BACTERIAL Borrelia recurrentis A1 Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Louse-borne relapsing fever Host Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile Adult patient with louse-borne relapsing fever in Ethiopia France 27 Public Gc00860 Gi01737 4233 000683_GCAT 412418 18233 643348519 930 800 1 7 NC_011244 NCBI Marseille-Nice Genopole PLoS Genetics 4, e1000185 September 15, 2008 Drancourt M Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia turicatae BACTERIAL Borrelia turicatae 91E135 Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Tick-borne relapsing fever Host Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile Soft tick Ornithodoros turicatae in USA USA Public Gc00791 Gi01738 349112 000684_GCAT 314724 13597 642555109 9173 852 1 0 NC_008710 NCBI RML-NIAID Unpublished June 5, 2008 Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Agrobacterium Agrobacterium tumefaciens BACTERIAL Agrobacterium radiobacter K84 bv II ATCC BAA-846 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Human Pathogen, Medical, Plant Pathogen None Host, Root nodule Aerobe Rod-shaped Pairs, Singles Motile Mesophile 25 - 28 USA 60 Public Gc00942 Gi00020 000691_GCAT 311403 13402 643348504 6700 6107 2 3 NC_011983, NC_011985 NCBI, Univ of Washington Univ of Washington NSF J Bacteriology 191, 2501-11 January 27, 2009 Nester EW Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Agrobacterium Agrobacterium vitis BACTERIAL Agrobacterium vitis S4 bv III Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Plant Pathogen Crown gall Host, Root nodule Aerobe Rod-shaped Singles Motile Mesophile aerial gall that developed on a two-year-old woody grapevine cane USA 57.7 Public Gc00943 Gi00021 5431 000692_GCAT 311402 13372 643348505 5009 4288 2 5 NC_011989, NC_011988 NCBI, Univ of Washington Univ of Washington NSF J Bacteriology 191, 2501-11 January 27, 2009 Nester EW Bacteria Verrucomicrobia Verrucomicrobiales Verrucomicrobiae Verrucomicrobiaceae Akkermansia Akkermansia muciniphila BACTERIAL Akkermansia muciniphila ATCC BAA-835 ATCC BAA-835T, CIP 107961 Genome VERRUCOMICROBIA Complete Complete and Published Evolutionary, Medical None Host, Intestinal microflora Anaerobe Oval-shaped Pairs, Singles Nonmotile Nonsporulating Mesophile 37 Human feces USA 55.8 Public Gc00780 Gi00999 278234 000693_GCAT 349741 20089 642555104 2664 2238 1 0 NC_010655 NCBI DOE Joint Genome Institute DOE Unpublished May 8, 2008 Smidt H Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Alteromonadaceae Alteromonas Alteromonas macleodii BACTERIAL Alteromonas macleodii Deep ecotype, DSM 17117 Sanger DSM 17117 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Environmental, Marine Microbial Initiative (MMI) None Deep sea, Marine Aerobe Rod-shaped Motile Heterotroph Mesophile Seawater obtained at 3500m depth from the Urania Basin in the Mediterranean Sea USA 44.9 Public Gc00846 Gi00833 200456 000695_GCAT 314275 13374 642555105 4412 4128 1 0 NC_011138 NCBI, JCVI Univ Miguel Hernandez, J. Craig Venter Institute Moore Foundation ISME J Epub August 14, 2008 Rodrmguez-Valera F Bacteria Bacteroidetes Candidatus Amoebophilus Candidatus Amoebophilus asiaticus BACTERIAL Candidatus Amoebophilus asiaticus 5a2 Acanthamoeba sp. Genome BACTEROIDETES Complete Complete and Published Biotechnological, Ecological, Evolutionary None Host Rod-shaped Mesophile USA 35 Public Gc00817 Gi01564 267344 000697_GCAT 452471 19981 642555114 1884 1487 1 0 NC_010830 NCBI, Univ of Vienna DOE Joint Genome Institute, Univ of Vienna DOE Unpublished June 9, 2008 Horn M Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Anaplasmataceae Anaplasma Anaplasma marginale BACTERIAL Anaplasma marginale Florida Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Anaplasmosis, Bovine anaplasmosis Host Aerobe Coccus-shaped Singles Mesophile erythrocytes from pooled blood samples from naturally infected cattle USA 49 Public Gc00951 Gi00027 23009 000700_GCAT 320483 13701 1202 995 1 0 NC_012026 NCBI Washington State Univ NSF BMC Genomics 11, 16 February 3, 2009 Palmer GH Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Micrococcaceae Arthrobacter Arthrobacter chlorophenolicus BACTERIAL Arthrobacter chlorophenolicus A6 DSM 12829 Genome ACTINOBACTERIA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Soil Aerobe Rod-shaped Motile Nonsporulating Mesophile Soil at Fort Collins Colorado USA 65.9 Public Gc00930 Gi01553 265507 000701_GCAT 452863 20011 643348509 4395 3885 1 2 NC_011886 NCBI DOE Joint Genome Institute DOE Unpublished January 9, 2009 Jansson J Bacteria Firmicutes Bacillales Bacilli Bacillaceae Geobacillus Geobacillus sp. WCH70 BACTERIAL Geobacillus sp. WCH70 Genome FIRMICUTES Complete Complete and Published Biotechnological None Facultative Rod-shaped Motile Sporulating Chemoorganotroph Thermophile USA 42.5 Public Gc01031 Gi02009 002638_GCAT 471223 20805 641736150 3464 3555 1 2 NC_012793 NCBI DOE Joint Genome Institute DOE Unpublished June 11, 2009 Mead D Bacteria Tenericutes Acholeplasmatales Mollicutes Acholeplasmataceae Candidatus Phytoplasma BACTERIAL Candidatus Phytoplasma australiense Genome FIRMICUTES Complete Complete and Published Agricultural, Plant Pathogen Australian grapevine yellows Host Aerobe Mesophile diseased Chardonnay grapevines from South Australia Australia 27.4 Public Gc00774 Gi01475 316247 000703_GCAT 59748 29469 642555117 879 727 1 0 NC_010544 NCBI Max Planck Institute, Charles Darwin Univ Tropical Plant Protection J. Bacteriology 190, 3979-91 May 1, 2008 Tran-Nguyen L Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Azotobacter Azotobacter vinelandii BACTERIAL Azotobacter vinelandii DJ, ATCC BAA-1303 ATCC BAA-1303 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Energy production, Environmental None Soil Aerobe Coccus-shaped Chains, Pairs, Singles Motile Lithotroph Mesophile USA 65 Public Gc01011 Gi01247 257741 000709_GCAT 322710 16 5365 5223 1 0 NC_012560 NCBI Univ of Washington NSF J. Bacteriology Epub April 15, 2009 Wood D Bacteria Firmicutes Bacillales Bacilli Paenibacillaceae Brevibacillus Brevibacillus brevis BACTERIAL Brevibacillus brevis NBRC 100599 NBRC 100599 Genome FIRMICUTES Complete Complete and Published Antibiotic production, Biotechnological None Soil Aerobe Rod-shaped Motile Sporulating Mesophile Japan 47 Public Gc00981 Gi00095 290183 000720_GCAT 358681 29147 6296 5947 1 0 NC_012491 NCBI, NITE Tokyo Univ of Agriculture and Technology, NITE Unpublished April 1, 2009 Fujita N Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH187 (F4810/72) 9.89X Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Food poisoning Host, Soil Facultative Rod-shaped Motile Sporulating Mesophile Vomit of a person having eaten cooked rice in London UK USA 35.6 Public Gc00897 Gi01256 275190 000723_GCAT 405534 17715 643348510 5269 6479 1 4 NC_011658 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished December 10, 2008 Kolsto AB Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus AH820 10.13X Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Food poisoning Soil Facultative Rod-shaped Motile Sporulating Mesophile "October 1995 in Akershus Norway, from the periodontal pocket of a 76 year old female patient with marginal periodontitis" USA 35.4 Public Gc00917 Gi01257 266807 000724_GCAT 405535 17711 643348511 5302 6457 1 3 NC_011773 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished December 19, 2008 JCVI Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus Q1 Genome FIRMICUTES Complete Complete and Published Medical None Oil fields, Soil Facultative Rod-shaped Chains Motile Sporulating Mesophile deep-subsurface oil reservoir in Daqing oilfield, Northeastern China China 35 Public Gc00895 Gi01380 000727_GCAT 361100 16220 643348514 5214 5205 1 2 NC_011969 NCBI Microbial Genome Center of ChMPH J Bacteriology 191, 1120-1121 January 23, 2009 Jin Q Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus G9842 10.11X Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Food poisoning Soil Facultative Rod-shaped Chains Motile Sporulating Mesophile Stool samples from an outbreak that involved three individuals in Nebraska in 1996 USA 35.3 Public Gc00914 Gi01384 264486 000731_GCAT 405531 17733 643348513 5387 6279 1 2 NC_011772 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished December 19, 2008 Hoffmaster A Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus cereus BACTERIAL Bacillus cereus B4264 (2002734361) 11.69X Genome FIRMICUTES Complete Complete and Published Biothreat, Human Pathogen, Medical Pneumonia Host, Soil Facultative Rod-shaped Chains Motile Sporulating Mesophile 37 1969 from a case of fatal pneumonia in a male patient USA 35 Public Gc00903 Gi01385 264447 000732_GCAT 405532 17731 643348512 5419 5805 1 0 NC_011725 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished December 17, 2008 Hoffmaster A Bacteria Firmicutes Bacillales Bacilli Bacillaceae Bacillus Bacillus weihenstephanensis BACTERIAL Bacillus weihenstephanensis KBAB4 Sanger 11x Genome FIRMICUTES Complete Complete and Published Medical None Soil Facultative Rod-shaped Motile Sporulating Psychrotolerant USA 35.4 Public Gc00702 Gi00791 247367 000734_GCAT 315730 13623 641228477 5262 6133 1 4 NC_010184 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, INRA DOE Unpublished December 21, 2007 Sorokin A Bacteria Firmicutes Lactobacillales Bacilli Enterococcaceae Enterococcus Enterococcus faecalis BACTERIAL Enterococcus faecalis OG1RF 454, Sanger, Solexa 28x 454, 104x Solexa, 4.5x Sanger ATCC 47077 Genome FIRMICUTES Complete Complete and Published Comparative analysis, Human Pathogen, Medical Bacteremia, Endocarditis, Urinary infection Host, Intestinal microflora, Wastewater Facultative Nonmotile Chemoorganotroph Mesophile derivative of strain OG1 USA 37.8 Public Gc00831 Gi01842 000750_GCAT 474186 20843 642791607 2739 214 1 0 NZ_ABPI00000000 NCBI, BCM-HGSC BCM-HGSC NIH-NIAID Genome Biology 9, R110 July 8, 2008 Highlander, SK Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bartonellaceae Bartonella Bartonella tribocorum BACTERIAL Bartonella tribocorum CIP 105476 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Medical, Rat Pathogen Bartonellosis Host Aerobe Rod-shaped Motile Nonsporulating Mesophile Blood of two wild rats International Public Gc00700 Gi01157 000773_GCAT 382640 16098 641228478 2619 2169 1 1 NC_010161 NCBI Max Planck Institute Nat. Genetics 39, 1469-1476 November 25, 2007 Schuster SC Bacteria Actinobacteria Bifidobacteriales Actinobacteria (class) Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum DJO10A Sanger 9.2x Genome ACTINOBACTERIA Complete Complete and Published Biotechnological, Food industry None Host, Intestinal microflora Anaerobe Rod-shaped Chains, Pairs, Singles Nonmotile Nonsporulating Mesophile 37 - 41 Healthy young adult's fece USA 59.1 Public Gc00811 Gi00079 325853 000776_GCAT 205913 18773 642555107 2375 2074 1 2 NC_010816 NCBI, DOE Joint Genome Institute Univ of Minnesota, DOE Joint Genome Institute DOE BMC Genomics 9, 247 June 5, 2008 O'Sullivan D Bacteria Actinobacteria Bifidobacteriales Actinobacteria (class) Bifidobacteriaceae Bifidobacterium Bifidobacterium longum BACTERIAL Bifidobacterium longum infantis ATCC 15697 Infantis ATCC 15697 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological, Food industry None Host, Human fecal, Intestinal microflora Anaerobe Rod-shaped Clusters, Pairs, Singles Nonmotile Nonsporulating Mesophile Human infant feces USA 59 Public Gc00886 Gi01539 000777_GCAT 391904 17189 643348516 2832 2416 1 0 NC_011593 NCBI DOE Joint Genome Institute DOE PNAS 105, 18964-9 November 20, 2008 Mills D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Alcaligenaceae Bordetella Bordetella petrii BACTERIAL Bordetella petrii Se-1111R, DSM 12804 DSM 12804T, CCUG 43448T Genome PROTEOBACTERIA-BETA Complete Complete and Published Medical None Fresh water Anaerobe Nonmotile Heterotroph Mesophile Anaerobic dechlorinating bioreactor culture enriched from river sediment Germany 65 Public Gc00697 Gi00083 21781 000782_GCAT 340100 28135 641228479 5287 5101 1 0 NC_010170 NCBI, Univ of Wuerzburg Univ of Wuerzburg, Bielefeld Univ GBF Unpublished December 18, 2007 Gross R Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia hermsii BACTERIAL Borrelia hermsii DAH Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Tick-borne relapsing fever Host Aerobe Spiral-shaped Motile Mesophile USA 29.8 Public Gc00792 Gi00085 139596 000785_GCAT 314723 29637 642555108 922 853 1 0 NC_010673 NCBI RML-NIAID NIH-NIAID Unpublished May 8, 2008 Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella canis BACTERIAL Brucella canis ATCC 23365 10x ATCC 23365 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Animal Pathogen, Biothreat, Medical Canine brucellosis Host Aerobe Coccus-shaped Nonmotile Nonsporulating Mesophile USA 57.2 Public Gc00686 Gi02286 255885 003008_GCAT 483179 20243 641228480 3300 3417 2 0 NC_010103, NC_010104 NCBI DOE Joint Genome Institute Unpublished November 29, 2007 Brettin, T Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella abortus BACTERIAL Brucella abortus S19 454, Sanger 20x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biothreat, Human Pathogen, Mammal Pathogen, Medical Spontaneous abortion Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Milk of American Jersey Cattle by Dr. John Buck in 1923 USA 57 Public Gc00790 Gi01919 290517 002543_GCAT 430066 18999 642555110 3284 3066 2 0 NC_010742, NC_010740 NCBI Virginia Bioinformatics Institute PLoS ONE 3, e2193 May 22, 2008 Crasta OR Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Brucellaceae Brucella Brucella suis BACTERIAL Brucella suis ATCC 23445 Sanger 10x ATCC 23445 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biothreat, Human Pathogen, Mammal Pathogen, Medical Brucellosis, Fever, Infectious abortions Host Aerobe Rod-shaped Singles, Pairs, Chains Nonmotile Nonsporulating Mesophile 37 USA 57 Public Gc00699 Gi02357 246981 003085_GCAT 470137 20371 641228481 3323 3428 2 0 NC_010169, NC_010167 NCBI, Virginia Bioinformatics Institute Los Alamos National Laboratory, DOE Joint Genome Institute Unpublished December 20, 2007 Brettin T Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia J2315 genomovar III Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Chronic infection, Necrotizing Pneumonia Host Facultative Rod-shaped Motile Mesophile Patient with cystic fibrosis in Edinburgh, UK United Kingdom 67 Public Gc00890 Gi00104 309674 000793_GCAT 216591 339 643348523 8060 7023 3 1 NC_011000, NC_011001, NC_011002 NCBI, Sanger Institute Sanger Institute Beowulf Genomics J Bacteriology 191, 261-77 October 23, 2008 Holden MTG Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia glumae BACTERIAL Burkholderia glumae BGR1 10.6x Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Plant Pathogen Panicle blight, Seedling rot Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile diseased rice panicle in Korea Korea 68 Public Gc00978 Gi00108 188110 000799_GCAT 626418 13405 6734 5781 2 4 NC_012724, NC_012721 NCBI Crop Functional Genomics Center, Seoul National Univ J. Bacteriology 191, 3758-3759 May 22, 2009 Kim M Bacteria Proteobacteria Campylobacterales Epsilonproteobacteria Campylobacteraceae Campylobacter Campylobacter lari BACTERIAL Campylobacter lari RM2100 Sanger ATCC BAA-1060D Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bacteremia, Diarrhea, Food poisoning, Gastroenteritis Fresh water, Soil Microaerophilic Spiral-shaped Chains, Singles Motile Nonsporulating Mesophile Human clinical isolate USA 29.6 Public Gc00851 Gi00122 000832_GCAT 306263 12517 638341054 1562 1571 1 1 NC_012039 NCBI USDA, J. Craig Venter Institute Foodborne Pathog Dis. 5, 371-86 February 5, 2009 Miller WG Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Pelodictyon Pelodictyon phaeoclathratiforme BACTERIAL Pelodictyon phaeoclathratiforme BU-1 Sanger DSMZ 5477(T) Genome CHLOROBI Complete Complete and Published Biotechnological None Fresh water, Marine Anaerobe Rod-shaped Singles Nonmotile Nonsporulating Photosynthetic, Phototroph Mesophile 15 - 25 USA 48.1 Public Gc00834 Gi00440 2670 000835_GCAT 324925 13011 642555146 3018 2969 1 0 NC_011060 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 18, 2008 Bryant DA Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Micrococcaceae Kocuria Kocuria rhizophila BACTERIAL Kocuria rhizophila DC2201 DSM 11926, ATCC 9341, NBRC 103217 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Host, Marine Aerobe Coccus-shaped Singles, Tetrads Nonmotile Mesophile Japan 71.1 Public Gc00769 Gi01300 000837_GCAT 378753 27833 642555133 2697 2413 1 NC_010617 NCBI, NITE NITE J. Bacteriology Epub June 6, 2008 Fujita N Bacteria Proteobacteria Caulobacterales Alphaproteobacteria Caulobacteraceae Caulobacter Caulobacter sp. K31 BACTERIAL Caulobacter sp K31 Sanger 13x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water Aerobe Rod-shaped Singles Motile Mesophile Low-oxygen groundwater sample USA 67.2 Public Gc00723 Gi01009 270365 000849_GCAT 366602 16306 641522612 5477 5554 1 2 NC_010338 NCBI DOE Joint Genome Institute DOE Unpublished February 7, 2008 Stephens C Bacteria Bacteroidetes Bacteroidales Bacteroidia Porphyromonadaceae Porphyromonas Porphyromonas gingivalis BACTERIAL Porphyromonas gingivalis ATCC 33277 Sanger ATCC 33277 Genome BACTEROIDETES Complete Complete and Published Human Pathogen, Medical Dental plaque, Periodontal infection Colon, Gastrointestinal tract, Host, Oral microflora, Respiratory tract Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile human gingival sulcus Japan 48.4 Public Gc00809 Gi02194 33300 002894_GCAT 431947 19051 642555148 2354 2155 1 0 NC_010729 NCBI Univ of Tokyo, Nagasaki Univ, Kitasato Univ DNA Research 15, 215-25 May 24, 2008 Hattori M Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus reuteri BACTERIAL Lactobacillus reuteri F275, JCM1112 454, Sanger 7.4x DSM 20016, JCM 1112 Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry, Human Microbiome Project (HMP), Medical None Birds intestinal microflora, Host, Human intestinal microflora, Mammalian intestinal microflora Facultative Rod-shaped Nonmotile Nonsporulating Mesophile Intestine of an adult human Japan 38.9 Public Gc00786 Gi02198 232291 002898_GCAT 299033 19011 642555135 2039 1901 1 0 AP007281, NC_010609 NCBI Univ of Tokyo DNA Research 15, 151-61 April 16, 2008 Morita H Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus fermentum BACTERIAL Lactobacillus fermentum IFO 3956 Sanger Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Birds intestinal microflora, Host, Human intestinal microflora, Mammalian intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile fermented plant material in Japan Japan 51 Public Gc00787 Gi02199 259425 002899_GCAT 334390 18979 641522633 2098 1912 1 0 NC_010610 NCBI Univ of Tokyo, Azabu Univ DNA Research 15, 151-61 April 16, 2008 Morita H Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli SE11 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Dairy industry, Human Microbiome Project (HMP) None Host, Human intestinal microflora Facultative Rod-shaped Singles, Pairs Motile Nonsporulating Mesophile Japan 50.8 Public Gc00875 Gi02201 322516 002901_GCAT 409438 18057 643348551 4887 4679 1 6 AP009240, NC_011415 NCBI Univ of Tokyo DNA Res. October 23, 2008 Hattori M Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Streptomycetaceae Streptomyces Streptomyces griseus BACTERIAL Streptomyces griseus griseus IFO 13350 Sanger 9.5x IFO 13350, NBRC 13350 Genome ACTINOBACTERIA Complete Complete and Published Anticancer agent, Biotechnological, Medical None Soil Aerobe Filament-shaped Filaments Nonmotile Sporulating Mesophile 25 - 35 Japan 72.2 Public Gc00759 Gi02203 261858 002903_GCAT 455632 20085 641522653 8545 7240 1 0 NC_010572 NCBI, Univ of Tokyo Univ of Tokyo J. Bacteriology Epub April 9, 2008 Horinouchi S Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium baculatum BACTERIAL Desulfomicrobium baculatum X, DSM 4028 454-FLX, Sanger 6.8x Sanger; 30.4x 454 DSM 4028, VKM B-1378, CCUG 34229 Genome PROTEOBACTERIA-DELTA Complete Complete and Published GEBA, Tree of Life None Obligate anaerobe Rod-shaped Motile Nonsporulating Mesophile 28-37 Manganese ore USA 58.6 Public Gc01026 Gi02302 003024_GCAT 525897 29527 3942 3566 1 0 NZ_ABTP00000000 NCBI, DOE Joint Genome Institute, IMG-GEBA DSMZ, DOE Joint Genome Institute DOE, DSMZ Unpublished June 9, 2009 Bruce D Bacteria Bacteroidetes Flavobacteriales Flavobacteria Flavobacteriaceae Capnocytophaga Capnocytophaga ochracea BACTERIAL Capnocytophaga ochracea VPI 2845, DSM 7271 454-FLX, Sanger 9.9x Sanger; 25.2x 454 DSM 7271, ATCC 27872, JCM 12966 Genome BACTEROIDETES Complete Complete and Published GEBA, Human Pathogen, Medical, Tree of Life Opportunistic infection, Periodontal infection Host, Human oral microflora Facultative Rod-shaped Motile Nonsporulating Chemoorganotroph Mesophile 30 - 37 Human oral cavity at Gerenzano, Italy USA 40 Public Gc01027 Gi02305 003027_GCAT 521097 29403 2612 2252 NZ_ABTH00000000 NCBI, DOE Joint Genome Institute, IMG-GEBA DSMZ, DOE Joint Genome Institute DOE, DSMZ Unpublished June 9, 2009 Bruce D Bacteria Actinobacteria Acidimicrobiales Actinobacteria (class) Acidimicrobiaceae Acidimicrobium Acidimicrobium ferrooxidans BACTERIAL Acidimicrobium ferrooxidans ICP, DSM 10331 454-FLX, Illumina, Sanger 6.8x Sanger; 52.9x pyrosequence DSM 10331 Genome ACTINOBACTERIA Complete Complete and Published GEBA, Tree of Life None Fresh water Aerobe Rod-shaped Motile Nonsporulating Autotroph Thermophile 48 Hot spring run-off in Iceland USA 68 Public Gc01023 Gi02326 003048_GCAT 525909 29525 2158 2092 1 0 NZ_ABSZ00000000 NCBI, DOE Joint Genome Institute, IMG-GEBA DSMZ, DOE Joint Genome Institute DOE, DSMZ Unpublished June 9, 2009 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Beutenbergiaceae Beutenbergia Beutenbergia cavernae BACTERIAL Beutenbergia cavernae HKI 0122, DSM 12333 454-FLX, Sanger 8.56x Sanger; 10.86x 454 DSM 12333, ATCC BAA-8, IFO 16432, NBRC 16432 Genome ACTINOBACTERIA Complete Complete and Published GEBA, Tree of Life None Soil Aerobe Rod-shaped Chains, Clusters, Singles Nonmotile Nonsporulating Mesophile 28 "Cave soil in Guangxi, China" USA 73 Public Gc01025 Gi02225 26352 002925_GCAT 471853 20827 4669 4278 1 0 NZ_ABTE00000000 NCBI, IMG-GEBA DSMZ, DOE Joint Genome Institute DOE, DSMZ Unpublished June 9, 2009 Bruce D Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Beijerinckiaceae Beijerinckia Beijerinckia indica BACTERIAL Beijerinckia indica indica ATCC 9039 ATCC 9039 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biopolymer production, Biotechnological, Oil industry None Soil Aerobe Rod-shaped Singles Nonmotile Chemoorganotroph Mesophile 20-30 USA 57 Public Gc00766 Gi01551 000860_GCAT 395963 20841 641522606 4170 3859 1 3 NC_010581 NCBI DOE Joint Genome Institute DOE Unpublished April 11, 2008 Dunfield P Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. BH68, ATCC 51142 ATCC 51142 Genome CYANOBACTERIA Complete Complete and Published Environmental None Fresh water Facultative Coccus-shaped Singles Nonmotile Photoheterotroph Mesophile "Intertidal sands near Port Aransas, Gulf of Mexico in Texas" USA 40 Public Gc00760 Gi01509 271092 000868_GCAT 43989 20319 641522622 5500 5357 2 4 NC_010547, NC_010546 NCBI Washington Univ, Purdue Univ Unpublished April 1, 2008 Pakrasi H Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 7424 PCC 7424, ATCC 29155 Genome CYANOBACTERIA Complete Complete and Published Environmental None Fresh water Anaerobe Coccus-shaped Singles Nonmotile Autotroph Mesophile Rice fields in Senegal USA 38 Public Gc00904 Gi01595 3157 000869_GCAT 65393 20479 643348533 5942 6151 1 6 NC_011729 NCBI DOE Joint Genome Institute DOE Unpublished December 17, 2008 Pakrasi H Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 7425 PCC 7425, ATCC 29141 Genome CYANOBACTERIA Complete Complete and Published Environmental None Fresh water Anaerobe Coccus-shaped Singles Nonmotile Autotroph, Phototroph Mesophile Rice fields in Senegal USA 48.6 Public Gc00933 Gi01596 000870_GCAT 395961 28337 643348534 5374 4966 1 3 NC_011884 NCBI DOE Joint Genome Institute DOE Unpublished January 9, 2009 Pakrasi H Bacteria Cyanobacteria Chroococcales Cyanothece BACTERIAL Cyanothece sp. PCC 8801 PCC 8801 Genome CYANOBACTERIA Complete Complete and Published Environmental None Fresh water Aerobe Coccus-shaped Singles Nonmotile Mesophile Rice fields in india and Taiwan USA 39 Public Gc00905 Gi01598 35028 000872_GCAT 41431 20503 643348535 4679 4455 1 3 NC_011726 NCBI DOE Joint Genome Institute DOE Unpublished December 17, 2008 Pakrasi H Archaea Euryarchaeota Thermococcales Thermococci Thermococcaceae Thermococcus Thermococcus onnurineus ARCHAEAL Thermococcus onnurineus NA1 Sanger KCTC 10859, JCM 13517 Genome EURYARCHAEOTA-THERMOCOCCI Complete Complete and Published Biotechnological None Fresh water 8.5 Anaerobe Coccus-shaped Motile Nonsporulating Heterotroph Hyperthermophile 80 PACMANUS hydrothermal vent sediment at a depth of 1650 meters Korea 52 Public Gc00859 Gi02367 359894 003095_GCAT 523850 20773 643348580 1847 1976 1 0 NC_011529 NCBI KORDI J Bacteriology 190, 7491-9 November 6, 2008 Lee J-H Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Aliivibrio Aliivibrio fischeri BACTERIAL Vibrio fischeri MJ11 Squid Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Environmental, Marine Microbial Initiative (MMI) None Fresh water Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile 20- 28 Squid light organ in Japan USA 38 Public Gc00852 Gi01467 250163 000933_GCAT 388396 19393 642555167 4478 4175 2 1 NC_011186, NC_011184 NCBI, JCVI Univ of Georgia, J. Craig Venter Institute Moore Foundation Unpublished August 28, 2008 Stabb E Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis 434/Bu L2 454, Sanger Genome CHLAMYDIAE Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Bronchitis, Lymphogranuloma vernerum, Pharyngitis, Pneumonia, Respiratory infection Host Rod-shaped Nonmotile Mesophile United Kingdom 41.3 Public Gc00712 Gi00818 000938_GCAT 471472 28583 641522614 1038 923 1 0 NC_010287 NCBI, Sanger Institute Sanger Institute Wellcome Trust Genome Res. 18, 161-71 January 19, 2008 Parkhill J Bacteria Chlamydiae Chlamydiales Chlamydiae (class) Chlamydiaceae Chlamydia Chlamydia trachomatis BACTERIAL Chlamydia trachomatis Jali20 B Genome CHLAMYDIAE Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Ocular infection Host Rod-shaped Nonmotile Mesophile clinical strain isolated from the conjunctiva in an active case of trachoma United Kingdom 40 Public Gc01002 Gi00139 201854 000941_GCAT 580049 32655 1044 875 1 0 FM872308 NCBI, Sanger Institute Sanger Institute, Univ of Southampton Wellcome Trust Unpublished May 18, 2009 Parkhill J Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chlorobium Chlorobium limicola BACTERIAL Chlorobium limicola DSM 245 DSM 245 Genome CHLOROBI Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water, Hot spring Anaerobe Rod-shaped Chains, Singles Nonmotile Nonsporulating Photoautotroph, Photosynthetic Mesophile Gilroy Hot spring USA 51.3 Public Gc00814 Gi00145 130684 000951_GCAT 290315 12606 642555121 2763 2576 1 0 NC_010803 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 4, 2008 Bryant DA Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chlorobium Chlorobium phaeobacteroides BACTERIAL Chlorobium phaeobacteroides BS1 Sanger Genome CHLOROBI Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Marine Facultative Rod-shaped Chains, Singles Nonmotile Nonsporulating Photosynthetic Mesophile From the chemocline of the Black Sea USA 48.9 Public Gc00816 Gi00147 134536 000952_GCAT 331678 12608 642555122 2736 2611 1 0 NC_010831 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 9, 2008 Bryant DA Bacteria Chloroflexi Chloroflexales Chloroflexi (class) Chloroflexaceae Chloroflexus Chloroflexus aurantiacus BACTERIAL Chloroflexus aurantiacus J-10-fl Sanger Genome CHLOROFLEXI Complete Complete and Published Biotechnological, Energy production, Evolutionary, Hydrogen production None Fresh water, Hot spring Anaerobe Filament-shaped Filaments Motile Photosynthetic, Phototroph Thermophile 52 - 60 Hakone hot spring area in Japan USA 56.6 Public Gc00703 Gi00150 1273 000954_GCAT 324602 59 641228485 5258 3966 1 0 NC_010175 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Univ of Puget Sound DOE Unpublished December 20, 2007 Bruce D Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Chloroherpeton Chloroherpeton thalassium BACTERIAL Chloroherpeton thalassium ATCC 35110 454 ATCC 35110 Genome CHLOROBI Complete Complete and Published Biotechnological, Energy production None Fresh water Facultative Rod-shaped Motile Photolithotroph, Photosynthetic Mesophile North East coast of the USA USA 45 Public Gc00826 Gi00734 347501 000956_GCAT 517418 13218 3293 2710 1 0 NC_011026 NCBI DOE Joint Genome Institute, Penn State Univ DOE Unpublished June 27, 2008 Bryant D Bacteria Chloroflexi Chloroflexales Chloroflexi (class) Chloroflexaceae Chloroflexus Chloroflexus sp. Y-400-fl BACTERIAL Chloroflexus sp. Y-400-fl DSM 637, ATCC 29364 Genome CHLOROFLEXI Complete Complete and Published Biotechnological None Filament-shaped Filaments Motile Mesophile Alkaline hot spring in Little Long Lake in Wisconsin USA 56.6 Public Gc00953 Gi00931 282094 000957_GCAT 480224 21119 642791617 5268 4159 1 0 NC_012032 NCBI DOE Joint Genome Institute DOE Unpublished February 4, 2009 Bryant D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Microbacteriaceae Clavibacter Clavibacter michiganensis BACTERIAL Clavibacter michiganensis sepedonicus ATCC 33113 Sanger 8x ATCC 33113, NCPBB 2137, PDDCC 2535 LMG 2889 Genome ACTINOBACTERIA Complete Complete and Published Agricultural, Plant Pathogen Ring rot, Tuber rot Host Aerobe Rod-shaped Pairs, Singles Nonmotile Nonsporulating Mesophile 25 - 28 Infected potato International 72.5 Public Gc00709 Gi00155 190187 000965_GCAT 31964 184 642555124 3258 3168 1 2 NC_010407 NCBI, Sanger Institute Sanger Institute USDA J Bacteriology 190, 2150-60 February 26, 2008 Ishimaru CA Bacteria Firmicutes Bacillales Bacilli Planococcaceae Lysinibacillus Lysinibacillus sphaericus BACTERIAL Lysinibacillus sphaericus C3-41 H5a5b Sanger 8.9x Genome FIRMICUTES Complete Complete and Published Agricultural, Insect Pathogen Larvicidal toxin Host, Mosquito, Soil Aerobe Rod-shaped Motile Sporulating Mesophile Mosquito breeding site in China in 1987 China 37.3 Public Gc00727 Gi02278 002997_GCAT 444177 19619 641522637 4639 5001 1 1 NC_010382 NCBI Beijing Genomics Institute Chinese Academy of Sciences J. Bacteriology Epub February 27, 2008 Yuan Z Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Macrococcus Macrococcus caseolyticus BACTERIAL Macrococcus caseolyticus JCSC5402 Sanger Genome FIRMICUTES Complete Complete and Published None Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 35 animal meat in a supermarket Japan 36 Public Gc00909 Gi02280 002999_GCAT 458233 20209 643348562 2102 1950 1 9 NC_011999 NCBI Juntendo Univ J Bacteriology 191, 1180-90 January 29, 2009 Bacteria Firmicutes Thermoanaerobacterales Clostridia Thermodesulfobiaceae Coprothermobacter Coprothermobacter proteolyticus BACTERIAL Coprothermobacter proteolyticus DSM 5265 DSM 5265 Genome FIRMICUTES Complete Complete and Published Evolutionary None Anaerobe Rod-shaped Pairs, Singles Nonmotile Nonsporulating Thermophile 63 Thermophilic digestor USA 45 Public Gc00862 Gi00739 355965 000976_GCAT 309798 12522 1424 1482 1 0 NC_011295 NCBI, Entrez J. Craig Venter Institute NSF Unpublished September 26, 2008 Sutton G Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Corynebacteriaceae Corynebacterium Corynebacterium urealyticum BACTERIAL Corynebacterium urealyticum DSM 7109 DSM 7109, ATCC 43042, NCTC 12011 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Cystitis, Pyelitis, Urinary tract infection Host Anaerobe Rod-shaped Singles Nonsporulating Chemoorganotroph Mesophile 37 Bladder stone Germany 64 Public Gc00755 Gi01606 13367 000982_GCAT 504474 29211 641522620 2369 2093 1 0 NC_010545 NCBI Bielefeld Univ Bielefeld Univ J Biotechnology Epub April 1, 2008 Tauch A Bacteria Proteobacteria Legionellales Gammaproteobacteria Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii CbuG_Q212 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Food poisoning, Q fever Host Facultative Coccus-shaped Singles Motile Sporulating Mesophile case of endocarditis USA 42 Public Gc00881 Gi01953 356835 002579_GCAT 434923 19137 643348531 2008 1871 1 0 NC_011527 NCBI RML-NIAID, Integrated Genomics Inc NIH-NIAID Infect Immun. Epub November 6, 2008 Samuel JE Bacteria Proteobacteria Legionellales Gammaproteobacteria Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii CbuK_Q154 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Food poisoning, Q fever Host Facultative Coccus-shaped Singles Motile Sporulating Mesophile patient with endocarditis USA 42 Public Gc00880 Gi01954 369055 002580_GCAT 434924 19139 643348532 2063 1905 1 1 NC_011528 NCBI RML-NIAID, Integrated Genomics Inc NIH-NIAID Infect Immun. Epub November 6, 2008 Samuel JE Bacteria Proteobacteria Legionellales Gammaproteobacteria Coxiellaceae Coxiella Coxiella burnetii BACTERIAL Coxiella burnetii RSA 331 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning Blood, Host Facultative Coccus-shaped Singles Motile Sporulating Mesophile Blood of an infected patient in northern Italy in 1945 USA 42 Public Gc00692 Gi01294 249377 000985_GCAT 360115 16791 641228487 2016 2308 1 1 NC_010117 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished December 5, 2007 Samuel JE Bacteria Deinococcus-Thermus Deinococcales Deinococci Deinococcaceae Deinococcus Deinococcus deserti BACTERIAL Deinococcus deserti VCD115 12x DSM 17065, LMG 22923 Genome THERMI Complete Complete and Published Biotechnological, Environmental None Soil Aerobe Coccus-shaped Nonmotile Nonsporulating Mesophile Sahara Desert in Morocco and Tunisia France 59.8 Public Gc00979 Gi01514 112393 000994_GCAT 310783 16691 3800 2650 1 3 NC_012526 NCBI, Genoscope Genoscope PLoS Genetics 5(3):e1000434 April 2, 2009 de Groot A Bacteria Firmicutes Clostridiales Clostridia Peptococcaceae Desulfitobacterium Desulfitobacterium hafniense BACTERIAL Desulfitobacterium hafniense DCB-2 Sanger DSM 10664 Genome FIRMICUTES Complete Complete and Published Bioremediation, Environmental None Sludge Anaerobe Rod-shaped Chains, Pairs, Singles Motile Sporulating Mesophile 37 - 38 Municipal sludge, Denmark USA 47.5 Public Gc00918 Gi00192 161064 000997_GCAT 272564 205 643348537 5279 4875 1 0 NC_011830 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute, Michigan State Univ DOE Unpublished January 5, 2009 TiedjeJM Bacteria Proteobacteria Desulfobacterales Deltaproteobacteria Desulfobacteraceae Desulfobacterium Desulfobacterium autotrophicum BACTERIAL Desulfobacterium autotrophicum HRM2, DSM 3382 Sanger 11.8x DSM 3382, ATCC 43914 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological None Fresh water Anaerobe Rod-shaped Motile Lithoautotroph Mesophile 20 - 30 Marine sediment in the Mediterranean sea near Italy Germany 48.9 Public Gc00947 Gi00194 000998_GCAT 177437 20931 5589 4871 1 1 NC_012108 NCBI, Goettingen Genomics Laboratory, REGX Goettingen Genomics Laboratory, REGX BMBF Environmental Microbiology 4(2):e4510 February 20, 2009 Amann R Bacteria Firmicutes Clostridiales Clostridia Peptococcaceae Candidatus Desulforudis Candidatus Desulforudis audaxviator BACTERIAL Candidatus Desulforudis audaxviator MP104C Metagenome FIRMICUTES Complete Complete and Published Environmental None Deep subsurface Anaerobe Rod-shaped Motile Sporulating Mesophile 60 Fracture water from a borehole at a depth of 2.8 km in a South African gold mine USA 60.8 Public Gc00733 Gi01880 259608 001000_GCAT 477974 21047 641522610 2349 2344 1 0 NC_010424 NCBI DOE Joint Genome Institute DOE, NASA Unpublished March 6, 2008 Bruce D Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfovibrionaceae Desulfovibrio BACTERIAL Desulfovibrio magneticus RS-1 ATCC 700980 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Biotechnological None Fresh water Anaerobe Rod-shaped Singles Motile Nonsporulating Mesophile Sediment from the Kameno River in Japan Japan 62 Public Gc01032 Gi00729 10461 001001_GCAT 184917 15681 638341181 5248 4685 1 2 NC_012796 NCBI, NITE NITE Genome Research in press June 11, 2009 Fujita N Bacteria Dictyoglomi Dictyoglomales Dictyoglomi (class) Dictyoglomaceae Dictyoglomus Dictyoglomus thermophilum BACTERIAL Dictyoglomus thermophilum H-6-12, ATCC 35947 DSM 3960, ATCC 35947 Genome DICTYOGLOMI Complete Complete and Published Evolutionary None Fresh water, Hot spring Anaerobe Rod-shaped Chains, Pairs, Singles Nonmotile Nonsporulating Chemoorganotroph Thermophile 78 Slightly alkaline Tsuetae Hot spring in Kumamoto Prefecture in Japan USA 33 Public Gc00863 Gi00738 314063 001004_GCAT 309799 30731 643348542 1959 1912 1 0 NC_011297 NCBI J. Craig Venter Institute NSF Unpublished September 26, 2008 Sutton G Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Edwardsiella Edwardsiella ictaluri BACTERIAL Edwardsiella ictaluri 93-146 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Fish Pathogen, Medical Enteric septicemia, Septicemia Fresh water, Host Facultative Rod-shaped Motile Nonsporulating Mesophile Enteric septicemia of catfish outbreak in a commercial catfish pond in Louisiana USA 53 Public Gc01019 Gi00212 196308 001005_GCAT 634503 34853 3812 3894 1 0 NC_012779 NCBI, Microgen Univ of Oklahoma, Mississippi State Univ USDA Unpublished June 4, 2009 Lawrence M Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Erwinia BACTERIAL Erwinia tasmaniensis Et1/99 DSM 17950 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural None Host Facultative Rod-shaped Motile Nonsporulating Mesophile "apple flowers in Tasmania, Australia" Germany 53.7 Public Gc00782 Gi01608 297358 001019_GCAT 338565 20585 642555128 3883 3730 1 5 NC_010694 NCBI Max Planck Institute Max Planck Society Environ Microbiol Epub May 13, 2008 Kube M Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli 55989 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Diarrhea Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile France 50 Public Gc00922 Gi01071 231361 001024_GCAT 585055 33413 643348544 5154 4763 1 0 NC_011748 NCBI, Genoscope Genoscope Unpublished December 16, 2008 Barbe V Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O17:K52:H18 UMN026 O17:K52:H18 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Urinary infection Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile Woman with uncomplicated acute cystitis in Minnesota in 1999 France 50 Public Gc00921 Gi01073 231361 001026_GCAT 585056 33415 643348552 5202 4826 1 0 NC_011751 NCBI, Genoscope Genoscope Unpublished December 17, 2008 Barbe V Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O81 ED1a O81 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Medical None Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile Faeces of a healthy man in 2000 in France France 50 Public Gc00924 Gi01074 231361 001027_GCAT 585397 33409 643348545 5209 4915 1 0 NC_011745 NCBI, Genoscope Genoscope Unpublished December 17, 2008 Barbe V Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O45:K1 S88 O45:K1 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Meningitis Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile Cerebro-spinal fluid of a late onset neonatal meningitis case in France in 1999 France 50 Public Gc00926 Gc00925 231361 001028_GCAT 585035 33375 643348550 5032 4696 1 0 NC_011742 NCBI, Genoscope Genoscope Unpublished December 16, 2008 Barbe V Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia fergusonii BACTERIAL Escherichia fergusonii UMN026, ATCC 35469 ATCC 35469 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Medical None Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile France 49.9 Public Gc00910 Gi01076 91643 001029_GCAT 585054 33369 643348553 4588 4266 1 0 NC_011740 NCBI, Genoscope Genoscope Unpublished December 16, 2008 Barbe V Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli DH10B Sanger 25.6x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Diarrhea Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 "Common laboratory strain, substrain of K-12. It was derived from DH10 (which was derived from MC1061 which in turn was derived from M182)" USA 50 Public Gc00716 Gi00237 270795 001045_GCAT 316385 20079 641522625 4686 4293 1 0 NC_010473 NCBI, BCM-HGSC BCM-HGSC, Univ of Wisconsin-Madison NIH-NHGRI J. Bacteriology Epub March 14, 2008 Weinstock G Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O127:H6 E2348/69 (EPEC) 8x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Diarrhea Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile European Consortium 50.6 Public Gc00878 Gi00239 001047_GCAT 216593 32571 643348548 4965 4554 1 2 NC_011601 NCBI, Sanger Institute Sanger Institute, Institut Pasteur Beowulf Genomics J Bacteriology 191, 347-54 November 26, 2008 Frankel G Bacteria Firmicutes Clostridiales Clostridia Eubacteriaceae Eubacterium Eubacterium eligens BACTERIAL Eubacterium eligens ATCC 27750 ATCC 27750 Genome FIRMICUTES Complete Complete and Published Biotechnological, Medical None Host, Intestinal microflora, Soil Anaerobe Rod-shaped Mesophile Human feces USA 37 Public Gc01021 Gi00245 001051_GCAT 515620 29073 2144 2069 1 2 NC_012778 NCBI, Washington Univ Washington Univ NSF PNAS 14, 5859-5864 June 4, 2009 Gordon JI Bacteria Firmicutes Clostridiales Clostridia Eubacteriaceae Eubacterium Eubacterium rectale BACTERIAL Eubacterium rectale ATCC33656 ATCC33656 Genome FIRMICUTES Complete Complete and Published Biotechnological, Medical None Host, Intestinal microflora Anaerobe Rod-shaped Nonsporulating Mesophile Human feces USA 41 Public Gc01020 Gi01743 001052_GCAT 515619 29071 3449 3698 1 0 NC_012781 NCBI, Washington Univ Washington Univ NSF PNAS 14, 5859-5864 June 4, 2009 Gordon JI Bacteria Firmicutes Bacillales Bacilli Exiguobacterium Exiguobacterium sibiricum BACTERIAL Exiguobacterium sibiricum 255-15 Sanger DSM 17290, JCM 13490, VKM B-2376 Genome FIRMICUTES Complete Complete and Published Astrobiological, Biotechnological, Cold adaptation None Permafrost sediment Facultative Rod-shaped Pairs, Singles, Chains Motile Nonsporulating Psychrotrophic depth of 43.6 m in the permafrost sediment of the Kolyma Indigirka Lowland USA 47.8 Public Gc00762 Gi00247 262209 001053_GCAT 262543 10649 641522626 3034 3247 1 2 NC_010556 NCBI, DOE Joint Genome Institute, MSU DOE Joint Genome Institute, Michigan State Univ DOE BMC Genomics 9, 547 April 3, 2008 Rodrigues DF Bacteria Firmicutes Bacillales Bacilli Exiguobacterium Exiguobacterium sp. AT1b BACTERIAL Exiguobacterium sp. AT1b ATCC BAA-1283 Genome FIRMICUTES Complete Complete and Published Astrobiological, Biotechnological None Facultative Rod-shaped Nonsporulating Thermophile Yellowstone National Park USA 47.8 Public Gc01000 Gi02005 284647 002634_GCAT 360911 27759 642791619 2999 3141 1 0 NC_012673 NCBI DOE Joint Genome Institute DOE Unpublished May 5, 2009 Tiedje J Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella philomiragia BACTERIAL Francisella philomiragia ATCC 25017 ATCC 25017 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Bacteremia, Pneumonia, Septicemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile Water in the Bear River Refuge in Utah USA 34 Public Gc00722 Gi00253 141624 001059_GCAT 484022 16089 641522628 2045 2012 1 1 NC_010336 NCBI, LLNL Lawrence Livermore National Lab, DOE Joint Genome Institute, CDC Unpublished February 11, 2008 Garcia E Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus aureus BACTERIAL Staphylococcus aureus aureus MRSA USA300_TCH1516 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Pneumonia, Septicemia Host Facultative Coccus-shaped Clusters, Singles Nonmotile Nonsporulating Mesophile 37 methicillin resistant strain USA Public Gc00688 Gi01866 269837 001074_GCAT 451516 19489 641228510 2872 2907 1 1 NC_010079 NCBI, BCM-HGSC BCM-HGSC BMC Microbiol. 7, 99 November 16, 2007 Highlander, SK Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Treponema Treponema pallidum BACTERIAL Treponema pallidum pallidum SS14 48.8x Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Syphilis Host Anaerobe Spiral-shaped Singles Motile Nonsporulating Mesophile Patient in Atlanta with secondary syphilis who did not respond to erythromycin therapy USA 52.8 Public Gc00789 Gi01870 293340 001078_GCAT 455434 20067 642555166 1139 1079 1 0 NC_010741 NCBI, BCM-HGSC BCM-HGSC NIH-NIAID BMC Microbiology 8, 76 May 22, 2008 Weinstock G Bacteria Gemmatimonadetes Gemmatimonadales Gemmatimonadetes (class) Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca BACTERIAL Gemmatimonas aurantiaca T-27T JCM 11422T, DSM 14586T, NBRC 100505 Genome GEMMATIMONADETES Complete Complete and Published Biotechnological, Wastewater treatment None 6.5 - 9.5 Aerobe Rod-shaped Motile Nonsporulating Mesophile 25 - 35 Anaerobic-aerobic sequential batch reactor under enhanced biological phosphorus removal conditions for wastewater treatment Japan 64 Public Gc00976 Gi01301 001101_GCAT 379066 4636 3989 1 0 NC_012489 NCBI, NITE NITE Unpublished April 1, 2009 Fujita N Bacteria Proteobacteria Desulfuromonadales Deltaproteobacteria Geobacteraceae Geobacter Geobacter sp. FRC-32 BACTERIAL Geobacter sp FRC-32 Sanger 10x Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water, Sediment, Soil Anaerobe Rod-shaped Singles Motile Nonsporulating Chemolithotroph Mesophile Uranium-contaminated subsurface at US USA 53 Public Gc00945 Gi00944 163742 001102_GCAT 316067 16263 643348554 4304 3798 1 0 NC_011979 NCBI DOE Joint Genome Institute DOE Unpublished January 27, 2009 Kostka J Bacteria Proteobacteria Desulfuromonadales Deltaproteobacteria Geobacteraceae Geobacter Geobacter bemidjiensis BACTERIAL Geobacter bemidjiensis Bem Sanger 11x ATCC BAA-1014, DSM 16622 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Sediment, Soil Anaerobe Rod-shaped Singles Nonmotile Nonsporulating Chemolithotroph Mesophile 30 Subsurface sediments collected in Bemidji Minnesotta USA 60.3 Public Gc00849 Gi01650 230617 001103_GCAT 404380 17707 642555129 4615 4106 1 0 NC_011146 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished August 19, 2008 Lovley D Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 ATCC 49037 Sugarcane Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural None Host Aerobe Rod-shaped Singles Motile Nonsporulating Diazotroph Mesophile 30 Sugarcane roots in Brazil Brazil 66 Public Gc00695 Gi00277 238788 001109_GCAT 272568 377 641228493 3944 4064 1 2 NC_010125 NCBI, Riogene LNCC/MCT, UENF, AGROBIOLOGIA, UFRJ, UERJ CNPq, MCT, FAPERJ Unpublished December 12, 2007 Ferreira PCG Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Acetobacteraceae Gluconacetobacter Gluconacetobacter diazotrophicus BACTERIAL Gluconacetobacter diazotrophicus PAL5 ATCC 49037, DSM 5601, CCUG 37298, NCCB 89154, LMG 7603 Sugarcane Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural None Host Aerobe Rod-shaped Singles Motile Nonsporulating Diazotroph Mesophile 30 sugarcane roots in Brazil USA 66.4 Public Gc00869 Gi02011 238788 002640_GCAT 272568 21071 643348555 3887 3676 1 1 NC_011365 NCBI DOE Joint Genome Institute DOE Unpublished October 16, 2008 Triplett EW Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Aggregatibacter Aggregatibacter aphrophilus BACTERIAL Aggregatibacter aphrophilus NJ8700 454 25x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Medical Endocarditis Host, Oral microflora Facultative Rod-shaped Nonmotile Mesophile oral flora of a healthy individual USA 42.23 Public Gc01010 Gi00945 9637 001111_GCAT 634176 36579 2313 2320 American Museum of Natural History DOE J. Bacteriology Epub May 15, 2009 DeSalle R Bacteria Proteobacteria Pasteurellales Gammaproteobacteria Pasteurellaceae Histophilus Histophilus somni BACTERIAL Haemophilus somnus 2336 Sanger 9.7x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Arthritis, Myocarditis, Pneumonia Host Facultative Rod-shaped Singles Nonmotile Mesophile 35 - 37 Lung of a calf which had pneumonia USA 37.4 Public Gc00743 Gi00287 2336 001132_GCAT 228400 388 641522630 2263 2108 1 0 NC_010519 NCBI, Microgen Virginia Polytechnic Institute, DOE Joint Genome Institute, Univ of Oklahoma USDA/CSREES Unpublished February 26, 2008 Inzana TJ Bacteria Firmicutes Clostridiales Clostridia Heliobacteriaceae Heliobacterium Heliobacterium modesticaldum BACTERIAL Heliobacterium modesticaldum Ice1 16.9x Genome FIRMICUTES Complete Complete and Published Environmental None Fresh water, Hot spring, Soil Anaerobe Rod-shaped Motile Sporulating Photosynthetic, Phototroph Thermophile 50 - 52 hot spring microbial mats and volcanic soil USA 57 Public Gc00721 Gi00725 13927 001138_GCAT 35701 13427 641522632 3075 3269 1 0 NC_010337 NCBI, TGen TGen, Arizona State Univ NSF J. Bacteriology Epub February 11, 2008 Blankenship RE Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Klebsiella Klebsiella pneumoniae BACTERIAL Klebsiella pneumoniae Kp342 8x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Medical Bacteremia, Pneumonia, Urinary tract infection Fresh water, Host, Intestinal microflora, Mouth microflora, Skin microflora, Soil Facultative Rod-shaped Nonmotile Mesophile interior of nitrogen-efficient maize plants USA 57.3 Public Gc00841 Gi01252 339583 001148_GCAT 507522 28471 643348560 5641 5425 1 2 NC_011283 NCBI J. Craig Venter Institute NSF PLoS Genetics 4, e1000141 September 24, 2008 Fouts DE Bacteria Firmicutes Lactobacillales Bacilli Lactobacillaceae Lactobacillus Lactobacillus helveticus BACTERIAL Lactobacillus helveticus DPC 4571 7.7x Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Intestinal microflora Facultative Rod-shaped Chains Nonmotile Mesophile Ireland 37.1 Public Gc00690 Gi01652 252324 001151_GCAT 405566 17811 641228495 2080 1903 1 0 NC_010080 NCBI Teagasc, MWG-Biotech J. Bacteriol. 190, 727-35 November 15, 2007 Beresford T Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Leptospiraceae Leptospira Leptospira biflexa BACTERIAL Leptospira biflexa Patoc 1 (Ames) Patoc Sanger 7x ATCC 23582 Genome SPIROCHAETES Complete Complete and Published Animal Pathogen, Medical Leptospirosis Fresh water, Host, Soil Aerobe Spiral-shaped Singles Motile Nonsporulating Mesophile "Stream water and kept in the culture collection at the National Animal Disease Center (NADC), Ames, IA since 1990" France 39 Public Gc00818 Gi01016 304980 001165_GCAT 355278 16153 642555136 3603 3641 2 1 NC_010842 NCBI, MaGe Monash Univ, Institut Pasteur PLoSs ONE 3 (2), E1607 February 13, 2008 Adler B Bacteria Proteobacteria Burkholderiales Betaproteobacteria Leptothrix Leptothrix cholodnii BACTERIAL Leptothrix cholodnii SP-6 Genome PROTEOBACTERIA-BETA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water, Soil Aerobe Filament-shaped Motile Heterotroph Mesophile "Water and flocculent from an artificial iron seep in Ithaca, NY" USA 68.9 Public Gc00751 Gi01560 258496 001167_GCAT 395495 20039 641522635 4909 4476 1 0 NC_010524 NCBI DOE Joint Genome Institute DOE Unpublished March 25, 2008 Emerson D Bacteria Firmicutes Lactobacillales Bacilli Leuconostocaceae Leuconostoc Leuconostoc citreum BACTERIAL Leuconostoc citreum KM20 Sanger 1.2 Kb, 2 Kb, 40 Kb Genome FIRMICUTES Complete Complete and Published Acetate production, Biotechnological, Ethanol production, Food industry, Lactic acid production None Facultative Sphere-shaped Singles Nonmotile Nonsporulating Psychrotrophic Baechu kimchi Korea 39 Public Gc00724 Gi00329 001168_GCAT 349519 16062 641522636 1796 1914 1 4 NC_010471 NCBI, GEM KRIBB J. Bacteriology Epub March 12, 2008 Kim JF Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium BACTERIAL Mycobacterium abscessus CIP 104536 Sanger 12x ATCC 19977 Genome ACTINOBACTERIA Complete Complete and Published Human Pathogen, Medical Broncho-pulmonary infection, Respiratory infection, Wound infection Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 37 France 64 Public Gc00729 Gi00949 29667 001218_GCAT 36809 15691 641522641 5067 5041 1 0 NC_010397 NCBI, Genoscope Genoscope Unpublished March 1, 2008 Barbe V Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium bovis BACTERIAL Mycobacterium bovis BCG Moreau RDJ Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Cattle Pathogen, Human Pathogen, Medical Tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile Brazilian vaccine strain Brazil Public Gc01007 Gi01688 001219_GCAT 413996 18279 4320 1 0 AM412059 NCBI, FENAM FAP Unpublished May 23, 2009 Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Mycobacteriaceae Mycobacterium Mycobacterium marinum BACTERIAL Mycobacterium marinum M, ATCC BAA-535 Sanger 9.3x ATCC BAA-535 Genome ACTINOBACTERIA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Tuberculosis Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Chemoorganotroph Mesophile 32 "Human patient isolate from Moffett Hospital, University of California, San Francisco in 1992" Australia 65 Public Gc00784 Gi00382 269840 001223_GCAT 216594 16725 641522642 6636 5550 1 1 NC_010612 NCBI, Sanger Institute Sanger Institute, Univ of Washington, Institut Pasteur Beowulf Genomics Genome Res. Epub April 15, 2008 Parkhill J Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Mycoplasma Mycoplasma arthritidis BACTERIAL Mycoplasma arthritidis 158L3-1 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Arthritis Host Facultative Sphere-shaped Singles Nonmotile Nonsporulating Mesophile 37 USA 30 Public Gc00825 Gi00388 317108 001241_GCAT 243272 1422 642555141 820 666 1 0 NC_011025 NCBI J. Craig Venter Institute NIH Infect. Immunity in press June 25, 2008 Dybvig K Bacteria Proteobacteria Nautiliales Epsilonproteobacteria Nautiliaceae Nautilia Nautilia profundicola BACTERIAL Nautilia profundicola Am-H Sanger 8x ATCC BAA-1463, DSM 18972 Genome PROTEOBACTERIA-EPSILON Complete Complete and Published Biotechnological, Carbon cycle, Environmental None Fresh water, Hydrothermal vent 6.0 - 9.0 Obligate anaerobe Rod-shaped Motile Chemoautotroph Thermophile 40 - 45 Epidermis of Alvinella pompejana from East Pacific Rise USA 33.5 Public Gc00958 Gi00397 51291 001255_GCAT 598659 32573 1676 1745 1 0 NC_012115 Univ of Delaware, J. Craig Venter Institute NSF PLoS Genetics 5, e1000362 February 13, 2009 Campbell BJ Bacteria Cyanobacteria Nostocales Nostocaceae Nostoc Nostoc punctiforme BACTERIAL Nostoc punctiforme ATCC 29133 Sanger ATCC 29133, PCC 73102 Macrozamia sp. Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Environmental None Fresh water, Soil Aerobe Filament-shaped Motile Mesophile gymnosperm cycad Macrozamia sp USA 41 Public Gc00777 Gi00414 3103 001275_GCAT 63737 216 642555144 8234 6791 1 5 NC_010628 NCBI, DOE Joint Genome Institute, report DOE Joint Genome Institute, Univ of Louisville DOE Unpublished April 24, 2008 Meeks JC Archaea Korarchaeota Candidatus Korarchaeum Candidatus Korarchaeum cryptofilum ARCHAEAL Candidatus Korarchaeum cryptofilum OPF8 Sanger Metagenome KORARCHAEOTA Complete Complete and Published Evolutionary None Mesophile Enriched cells originate from Obsidian Pool, Yellowstone National Park, Wyoming, USA, USA 49 Public Gc00747 Gi02262 001331_GCAT 374847 16525 641522611 1590 1707 1 0 NC_010482 NCBI DOE Joint Genome Institute DOE PNAS Epub March 18, 2008 Elkins J Bacteria Verrucomicrobia Opitutae Opitutaceae Opitutus Opitutus terrae BACTERIAL Opitutus terrae PB90-1 DSM 11246 Genome VERRUCOMICROBIA Complete Complete and Published Evolutionary None Soil Anaerobe Coccus-shaped Singles, Chains, Pairs Motile Nonsporulating Mesophile Rice paddy soil USA 65.3 Public Gc00764 Gi01027 1561 001343_GCAT 452637 19989 641522643 5957 4767 1 0 NC_010571 NCBI DOE Joint Genome Institute DOE Unpublished April 8, 2008 Smidt H Bacteria Aquificae Aquificales Aquificae (class) Aquificaceae Hydrogenobaculum Hydrogenobaculum sp. Y04AAS1 BACTERIAL Hydrogenobaculum sp. Y04AAS1 Sanger Genome AQUIFICAE Complete Complete and Published Astrobiological, Bioremediation, Biotechnological None Fresh water Aerobe Rod-shaped Motile Nonsporulating Thermophile 58 "Obsidian Pool, Acidic hot spring in Yellowstone National Park" USA 34 Public Gc00844 Gi01926 170563 002550_GCAT 380749 18891 642555132 1559 1691 1 0 NC_011126 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE J. Bacteriology Epub August 6, 2008 Mead D Bacteria Aquificae Aquificales Aquificae (class) Hydrogenothermaceae Persephonella Persephonella marina BACTERIAL Persephonella marina EX-H1 Genome AQUIFICAE Complete Complete and Published Biotechnological None Marine Microaerophilic Rod-shaped Motile Nonsporulating Chemolithoautotroph Thermophile 73 Deep sea hydrothermal vent on the East Pacific Rise USA 37.2 Public Gc00938 Gi00443 30394 001355_GCAT 123214 12526 1930 1981 1 1 NC_012440 NCBI J. Craig Venter Institute, Portland State Univ NSF J. Bacteriology 191, 1992-1993 March 25, 2009 Reysenbach AL Bacteria Chlorobi Chlorobiales Chlorobia Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii BACTERIAL Prosthecochloris aestuarii SK413, DSM 271 Sanger DSM 271 Genome CHLOROBI Complete Complete and Published Biotechnological None Fresh water Coccus-shaped Nonmotile Photosynthetic Mesophile 30 USA 50 Public Gc00835 Gi00485 130703 001377_GCAT 290512 12749 642555149 2512 2451 1 1 NC_011059 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished July 18, 2008 Bryant DA Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Proteus Proteus mirabilis BACTERIAL Proteus mirabilis HI4320 Sanger 8x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical, Opportunistic Pathogen Encephalitis, Pneumonia, Pyelonephritis, Septicemia, Surgical wound infection, Ulcer, Urinary tract infection, Urolithiasis Host, Intestinal microflora Facultative Rod-shaped Motile Nonsporulating Mesophile 37 Urine of a nursing home patient with a long term (>30 day) indwelling urinary catheter International 38.9 Public Gc00758 Gi00488 001380_GCAT 529507 12624 642555150 4063 3784 1 1 NC_010554 NCBI, Sanger Institute Sanger Institute, Univ of Maryland Wellcome Trust J. Bacteriology 190, 4027-37 May 20, 2008 Mobley H Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Pseudoalteromonadaceae Pseudoalteromonas Pseudoalteromonas tunicata BACTERIAL Pseudoalteromonas tunicata D2 Sanger CCUG 26757 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Environmental, Marine Microbial Initiative (MMI) None Marine Facultative Rod-shaped Motile Nonsporulating Mesophile 28 Adult tunicate surface at a depth of 10 m in Gullmarsfjorden off of the west coast of Sweden USA 40 Public Gc00887 Gi00876 128175 001381_GCAT 87626 13456 638341157 4992 4733 1 NZ_AAOH00000000 NCBI, JCVI Univ of Georgia, J. Craig Venter Institute Moore Foundation PLoS ONE 3, e3252 September 24, 2007 Thomas T Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa BACTERIAL Pseudomonas aeruginosa LESB58 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical Cystic Fibrosis Fresh water, Host, Soil Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile Liverpool Cystic Fibrosis (CF) clinic center USA 66 Public Gc00915 Gi01253 001388_GCAT 557722 31101 643348568 6601 5925 1 0 NC_011770 NCBI, Sanger Institute, Pseudomonas Genome DBase Sanger Institute, Simon Fraser Univ, Univ of Liverpool, Univ of British Columbia Wellcome Trust Genome Research 19(1):12-23 December 24, 2008 Parkhill J Bacteria Proteobacteria Pseudomonadales Gammaproteobacteria Pseudomonadaceae Pseudomonas Pseudomonas fluorescens BACTERIAL Pseudomonas fluorescens SBW25 Sanger 9x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Bioremediation, Environmental None Aerobe Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile leaf surfaces of a sugar beet plant United Kingdom 60.5 Public Gc01005 Gi00493 001390_GCAT 216595 343 6722 6009 1 0 Sanger Institute, Pseudomonas Genome DBase Univ of Birmingham, Sanger Institute, Univ of Oxford BBSRC Genome Biology 10(5):R51 May 11, 2009 Thomson NR Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Cupriavidus BACTERIAL Cupriavidus taiwanensis LMG19424 Mimosa pudica Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural None Host, Root nodule Facultative Rod-shaped Motile Nonsporulating Heterotroph Mesophile Root nodule of the legume Mimosa pudica in Taiwan France 67.7 Public Gc00754 Gi00956 88067 001400_GCAT 164546 15733 641522621 3416 1640 2 1 NC_010530, NC_010528 Genoscope Genoscope Genome Res Epub March 26, 2008 Masson-Boivin C Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Micrococcaceae Renibacterium Renibacterium salmoninarum BACTERIAL Renibacterium salmoninarum ATCC 33209 Sanger 9,7x ATCC 33209, IFO 15589, NCMB 2235, DSM 20767 Genome ACTINOBACTERIA Complete Complete and Published Fish Pathogen, Medical Bacterial kidney disease Fresh water, Host Facultative Coccus-shaped Singles Nonmotile Nonsporulating Mesophile 15 Yearling chinook salmon at a salmon hatchery in Western Oregon USA 56.3 Public Gc00698 Gi00502 12406 001402_GCAT 288705 19227 641228502 3558 3605 1 0 NC_010168 NCBI, Univ of Washington, NWFSC Univ of Washington, NCCCWA, Integrated Genomics Inc, NWFSC USDA J Bacteriology Epub December 18, 2007 Strom M Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Rhizobium Rhizobium leguminosarum BACTERIAL Rhizobium leguminosarum WSM2304 trifolii Clover plants Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Biotechnological None Host, Root nodule Aerobe Rod-shaped Singles Motile Nonsporulating Mesophile USA 61 Public Gc00870 Gi01548 268431 001404_GCAT 395492 20179 643348569 4537 6705 1 4 NC_011369 NCBI DOE Joint Genome Institute DOE Unpublished October 16, 2008 Reeve WG Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Rhizobiaceae Rhizobium BACTERIAL Rhizobium sp. NGR234 (ANU265) Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Agricultural, Biotechnological None Host, Root nodule Aerobe Rod-shaped Singles Motile Nonsporulating Mesophile Germany 63 Public Gc00990 Gi00585 85924 001406_GCAT 394 21101 3925 3700 1 2 NC_012587 NCBI, Goettingen Genomics Laboratory Goettingen Genomics Laboratory, Univ of Geneva Appl. Environ. Microbiol. Epub April 22, 2009 Streit W Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Nocardiaceae Rhodococcus Rhodococcus erythropolis BACTERIAL Rhodococcus erythropolis PR4 NBRC 100887 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Marine Aerobe Rod-shaped Filaments Nonmotile Nonsporulating Mesophile Pacific Ocean seawater Japan 62 Public Gc00980 Gi00730 001408_GCAT 234621 20395 6516 6104 1 3 NC_012490 NCBI, NITE NITE Unpublished April 1, 2009 Fujita N Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Nocardiaceae Rhodococcus Rhodococcus opacus BACTERIAL Rhodococcus opacus B4 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological None Aerobe Coccus-shaped Filaments Nonmotile Nonsporulating Mesophile Japan 67 Public Gc00982 Gi01302 98913 001409_GCAT 632772 34839 7913 7308 1 5 NC_012522 NCBI, NITE NITE Unpublished April 2, 2009 Fujita N Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Polynucleobacter Polynucleobacter necessarius BACTERIAL Polynucleobacter necessarius STIR1 Euplotes aediculatus Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Ecological None Endosymbiont, Fresh water, Fresh water, Host Aerobe Rod-shaped Nonmotile Heterotroph Mesophile USA 45.6 Public Gc00757 Gi01031 263630 001414_GCAT 452638 19991 641522644 1560 1589 1 0 NC_010531 NCBI DOE Joint Genome Institute DOE Unpublished March 28, 2008 Hahn M Bacteria Proteobacteria Rhizobiales Alphaproteobacteria Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris BACTERIAL Rhodopseudomonas palustris TIE-1 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Soil Facultative Rod-shaped Singles Motile Photolithoautotroph Mesophile 25 - 30 Iron-rich mat from School Street Marsh in Woods Hole MA USA 64 Public Gc00824 Gi01561 266374 001416_GCAT 395960 20167 642555153 5744 5377 1 0 NC_011004 NCBI DOE Joint Genome Institute DOE Unpublished June 23, 2008 Emerson D Bacteria Proteobacteria Rhodospirillales Alphaproteobacteria Rhodospirillaceae Rhodospirillum Rhodospirillum centenum BACTERIAL Rhodospirillum centenum SW 9.7x Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Biotechnological None Fresh water Facultative Spiral-shaped Motile Lithotroph, Photoheterotroph, Photosynthetic Mesophile 40 - 42 USA 70 Public Gc00877 Gi00727 326713 001418_GCAT 414684 18307 643348571 4355 4002 1 0 NC_011420 NCBI, TGen TGen, Arizona State Univ NSF Unpublished October 24, 2008 Blankenship RE Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia rickettsii BACTERIAL Rickettsia rickettsii Iowa Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Rocky Mountain Spotted Fever Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 USA 32 Public Gc00707 Gi02173 265325 002838_GCAT 452659 19943 641522647 1268 1458 1 0 NC_010263 NCBI RML-NIAID, Integrated Genomics Inc NIH Infect. Immun. 76, 542-5 January 17, 2008 Hackstadt T Bacteria Proteobacteria Rickettsiales Alphaproteobacteria Rickettsiaceae Rickettsia Rickettsia rickettsii BACTERIAL Rickettsia rickettsii Sheila Smith Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Human Pathogen, Medical Rocky Mountain Spotted Fever Host Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 37 Patient with Rocky Mountain spotted fever USA 32 Public Gc00736 Gi01654 001427_GCAT 392021 9636 640753046 1257 1417 1 0 NC_009882 NCBI Univ of Iowa, The Institute for Systems Biology Unpublished October 2, 2007 Madan A Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica arizonae sv 62:z4,z23 RSK2980 Sanger ATCC BAA-731 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Human Pathogen, Medical, Reptile Pathogen Food poisoning, Gastroenteritis, Salmonellosis Host Facultative Rod-shaped Singles, Pairs Motile Nonsporulating Chemoorganotroph Mesophile cornsnake in 1986 in Oregon USA 51 Public Gc00685 Gi00531 001445_GCAT 41514 13030 641228505 4600 4779 1 0 NC_010067 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished November 28, 2007 Clifton S Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Paratyphi B SPB7 Paratyphi B Sanger 8x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Paratyphoid fever, Salmonellosis Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 Patient in Malaysia in 2002 USA 52 Public Gc00687 Gi00535 001448_GCAT 272994 27803 641228506 4800 5857 1 0 NC_010102 NCBI, Washington Univ Washington Univ NIH-NIAID Unpublished November 30, 2007 Clifton S Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Paratyphi C RKS4594 Paratyphi C Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Paratyphoid fever, Salmonellosis Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 China 52.8 Public Gc00964 Gi02487 003212_GCAT 476213 20993 4800 4578 1 1 NC_012125 NCBI Peking Univ PLoS ONE 4, E4510 March 3, 2009 Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica enterica PT4 P125109 Enteritidis 9x NCTC 13349 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile Outbreak of human food-poisoning in the UK which was traced back to a poultry farm. United Kingdom 52.2 Public Gc00833 Gi00539 001453_GCAT 550537 30687 643348572 4685 4318 1 0 NC_011294 NCBI, Sanger Institute Sanger Institute Beowulf Genomics Genome Research 18, 1624-37 June 26, 2008 Parkhill J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Gallinarum 287/91 Gallinarum 9x NCTC 13346 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile "outbreak of fowl typhoid in brownegg laying hens by Prof. A. Berchieri, University of Sao Paulo, Jaboticabal, Brazil" United Kingdom 52.2 Public Gc00832 Gi00540 001455_GCAT 550538 30689 643348573 4658 3965 1 0 NC_011274 NCBI, Sanger Institute Sanger Institute, PHLS Beowulf Genomics Genome Research 18, 1624-37 June 26, 2008 Parkhill J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Paratyphi A AKU_12601 Paratyphi A Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis, Typhoid fever Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile clinical isolate from a child with paratyphoid fever in Karachi, Pakistan, 2004 United Kingdom 52.2 Public Gc00853 Gi00541 315234 001456_GCAT 554290 30943 642555158 4581 4209 1 1 NC_011147 NCBI, Sanger Institute Sanger Institute, Imperial College Wellcome Trust BMC Genomics 10(1):36 August 18, 2008 Parkhill J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Agona SL483 Agona Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Food, Fresh water, Host, Soil Facultative Rod-shaped Singles, Pairs Motile Nonsporulating Chemoorganotroph Mesophile USA 52 Public Gc00850 Gi01620 259042 001463_GCAT 454166 20063 642555154 4798 4720 1 1 NC_011149 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished August 22, 2008 Ravel J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Dublin CT_02021853 Dublin Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile bovine-adapted serovar USA 52 Public Gc00856 Gi01621 355218 001464_GCAT 439851 19467 642555155 4842 4721 1 1 NZ_ABAP00000000 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished September 5, 2008 Ravel J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica sv Heidelberg SL476, CVM30485 Heidelberg Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile USA 52 Public Gc00839 Gi01623 270887 001466_GCAT 454169 20045 642555156 488 4884 1 2 NC_011083 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished July 25, 2008 Ravel J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Newport SL254 Newport Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Food, Fresh water, Host, Soil Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile MDR strain from one of two distinct lineages of the Newport serovar USA 52 Public Gc00838 Gi01629 330633 001472_GCAT 423368 18747 642555157 4827 4913 1 2 NC_011080 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished July 25, 2008 Ravel J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Salmonella Salmonella enterica BACTERIAL Salmonella enterica Schwarzengrund CVM19633 Schwarzengrund Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Food poisoning, Gastroenteritis, Salmonellosis Food, Fresh water, Host, Soil Facultative Rod-shaped Singles, Pairs Motile Nonsporulating Chemoorganotroph Mesophile USA 52.9 Public Gc00842 Gi01633 348963 001476_GCAT 439843 19459 642555159 4709 4730 1 2 NC_011094 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished July 30, 2008 Ravel J Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella baltica BACTERIAL Shewanella baltica OS223 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Marine Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Psychrotolerant 4 Sea water, oxic-anoxic interface, 120m depth from the Baltic Sea USA 46.3 Public Gc00902 Gi02027 236081 002656_GCAT 407976 17985 643348574 5145 4422 1 3 NC_011663 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished December 15, 2008 Tiedje J Bacteria Firmicutes Natranaerobiales Clostridia Natranaerobiaceae Natranaerobius Natranaerobius thermophilus BACTERIAL Natranaerobius thermophilus JW/NM-WN-LF Genome FIRMICUTES Complete Complete and Published Biotechnological None Fresh water Anaerobe Rod-shaped Nonmotile Nonsporulating Thermophile Halophile "Soda lakes of the Wadi An Natrun, Egypt" USA 36.2 Public Gc00772 Gi02029 261070 002658_GCAT 457570 20207 642555142 3165 3018 1 2 NC_010718 NCBI DOE Joint Genome Institute DOE Unpublished April 9, 2008 Wiegel J Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans BACTERIAL Desulfovibrio desulfuricans desulfuricans 27774 ATCC 27774, DSM 6969 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water, Rumen Anaerobe Rod-shaped Singles Motile Nonsporulating Mesophile 37 Rumen of a sheep USA 58 Public Gc00931 Gi02266 002982_GCAT 525146 29493 643348538 2873 2356 1 0 NC_011883 NCBI DOE Joint Genome Institute DOE Unpublished January 9, 2009 Hazen TC Bacteria Proteobacteria Desulfovibrionales Deltaproteobacteria Desulfovibrionaceae Desulfovibrio Desulfovibrio vulgaris BACTERIAL Desulfovibrio vulgaris Miyazaki F Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Fresh water, Salt marsh, Soil Anaerobe Rod-shaped Singles Motile Nonsporulating Mesophile USA 67 Public Gc00916 Gi02267 002983_GCAT 883 27731 643348539 4040 3180 1 0 NC_011769 NCBI DOE Joint Genome Institute DOE Unpublished December 24, 2008 Hazen TC Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Diaphorobacter Diaphorobacter sp. TPSY BACTERIAL Diaphorobacter sp TPSY Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Environmental None Fresh water Facultative Rod-shaped Motile Mesophile USA 66 Public Gc00950 Gi02057 002705_GCAT 535289 29975 643348541 3796 3479 1 0 NC_011992 NCBI DOE Joint Genome Institute DOE Unpublished January 27, 2009 Coates JD Bacteria Proteobacteria Burkholderiales Betaproteobacteria Comamonadaceae Variovorax Variovorax paradoxus BACTERIAL Variovorax paradoxus S110 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural None Soil Aerobe Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile USA 67 Public Gc01030 Gi02062 002710_GCAT 543728 30453 6754 6453 2 0 NC_012792, NC_012791 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished June 11, 2009 Han JI Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Actinosynnemataceae Actinosynnema Actinosynnema mirum BACTERIAL Actinosynnema mirum 101, DSM 43827 454-FLX, Illumina, Sanger 10x Sanger; 40x pyrosequence DSM 43827 Genome ACTINOBACTERIA Complete Complete and Published Antibiotic production, Biotechnological, GEBA, Tree of Life None Soil Aerobe Nonmotile Sporulating Chemoorganotroph Mesophile 10-30 "Blade of grass from Raritan River NJ, USA" USA 73.7 Public Gc01024 Gi02064 002712_GCAT 446462 19705 8248 7177 1 0 NZ_ABTA00000000 NCBI, DOE Joint Genome Institute, IMG-GEBA DSMZ, DOE Joint Genome Institute DOE, DSMZ Unpublished June 9, 2009 Bruce D Bacteria Actinobacteria Actinomycetales Actinobacteria (class) Dermabacteraceae Brachybacterium Brachybacterium faecium BACTERIAL Brachybacterium faecium 6-10, DSM 4810 454-FLX, Illumina, Sanger 50x DSM 4810, ATCC 43885, IMET 11352, NCIB 9860 Genome ACTINOBACTERIA Complete Complete and Published Sugars fermentor GEBA, Tree of Life None Soil Aerobe Rod-shaped Nonmotile Nonsporulating Mesophile 25-30 Poultry deep litter USA 72 Public Gc01028 Gi02066 12526 002714_GCAT 446465 17026 3614 3198 1 0 NZ_ABTF00000000 NCBI, DOE Joint Genome Institute, IMG-GEBA DSMZ, DOE Joint Genome Institute DOE, DSMZ SIGS in press June 9, 2009 Bruce D Bacteria Spirochaetes Spirochaetales Spirochaetes (class) Spirochaetaceae Borrelia Borrelia burgdorferi BACTERIAL Borrelia burgdorferi ZS7 Genome SPIROCHAETES Complete Complete and Published Human Pathogen, Medical Lyme disease Host Microaerophilic Spiral-shaped Motile Nonsporulating Mesophile USA 28 Public Gc00906 Gi02078 263647 002726_GCAT 445985 19839 643348517 906 1494 1 6 NZ_ABCX00000000 NCBI, JCVI J. Craig Venter Institute NIH-NIAID Unpublished December 17, 2008 Fraser-Liggett C Bacteria Bacteroidetes Flavobacteriales Flavobacteria Candidatus Sulcia Candidatus Sulcia muelleri BACTERIAL Candidatus Sulcia muelleri GWSS glassy-winged sharpshooter Genome BACTEROIDETES Complete Complete and Published Agricultural None Host Mesophile USA 22 Public Gc00693 Gi02084 257992 002732_GCAT 444179 19617 641228484 245 294 1 0 NC_010118 NCBI Univ of Arizona PNAS 104, 19392-7 December 7, 2007 Moran, N Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli SECEC SMS-3-5 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Diarrhea Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 Toxic-metal contaminated site Shipyard Creek Charleston South Carolina USA 50.5 Public Gc00750 Gi02124 263843 002775_GCAT 439855 19469 641522624 5068 5047 1 4 NC_010498 NCBI, J. Craig Venter Institute J. Craig Venter Institute NIH-NIAID Unpublished March 20, 2008 Ravel J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Escherichia Escherichia coli BACTERIAL Escherichia coli O157:H7 EC4115 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Comparative analysis, Human Pathogen, Medical Diarrhea, Hemorrhagic colitis Host, Human intestinal microflora Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Mesophile 37 USA 50 Public Gc00867 Gi02130 265419 002781_GCAT 444450 27739 643348549 5572 6405 1 2 NC_011353 NCBI J. Craig Venter Institute NIH-NIAID Unpublished October 8, 2008 Ravel J Bacteria Proteobacteria Caulobacterales Alphaproteobacteria Caulobacteraceae Phenylobacterium Phenylobacterium zucineum BACTERIAL Phenylobacterium zucineum HLK1 CGMCC 1.3786, DSM 18354 Genome PROTEOBACTERIA-ALPHA Complete Complete and Published Medical Unknown Host 6.5 - 7.5 Aerobe Rod-shaped Motile Mesophile 37 Human erythroleukemia cell line K562 China 71.2 Public Gc00847 Gi02455 002795_GCAT 450851 19931 642555147 3996 3899 1 1 NC_011144 NCBI Beijing Genomics Institute, Zhejiang Univ BMC Genomics 9, 386 August 18, 2008 Luo Y Bacteria Proteobacteria Alteromonadales Gammaproteobacteria Shewanellaceae Shewanella Shewanella piezotolerans BACTERIAL Shewanella piezotolerans WP3 Sanger 6.52x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological None Deep sea, Marine, Sediment Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Heterotroph Psychrotolerant 15 - 20 Sediment; under 1,914 m of water depth collected in the west Pacific Ocean China 43 Public Gc00884 Gi01656 359942 001491_GCAT 225849 17675 5396 4933 1 0 NC_011566 NCBI Beijing Genomics Institute PLoS ONE 3 (4), E1937 November 14, 2008 Wang F Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Shigella Shigella boydii BACTERIAL Shigella boydii BS512,CDC 3083-94 18 Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Dysenteria, Food poisoning Host Facultative Rod-shaped Pairs, Singles Motile Nonsporulating Chemoorganotroph Mesophile 37 12-year-old boy in Arizona by Dr. Nancy Stockbine USA 51 Public Gc00779 Gi01141 138896 001499_GCAT 344609 15637 641522650 4615 4848 1 5 NC_010658 NCBI J. Craig Venter Institute NIH-NIAID Unpublished May 5, 2008 Ravel J Bacteria Firmicutes Bacillales Bacilli Staphylococcaceae Staphylococcus Staphylococcus carnosus BACTERIAL Staphylococcus carnosus TM300 11.8x Genome FIRMICUTES Complete Complete and Published Biotechnological, Food industry None Facultative Clusters, Singles Nonmotile Nonsporulating Mesophile Germany 34.6 Public Gc00955 Gi00598 14830 001520_GCAT 396513 34717 2566 2474 1 0 AM295250, NC_012121 NCBI MWG-Biotech, Univ of Wuerzburg Appl Environ Microbiol. 75, 811-22 February 2, 2009 Rosenstein R Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Stenotrophomonas Stenotrophomonas maltophilia BACTERIAL Stenotrophomonas maltophilia K279a Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical Bacteremia, Nosocomial infection, Opportunistic infection, Pulmonary infection Fresh water, Host, Plants, Soil Aerobe Mesophile Blood of a elderly male patient undergoing chemotherapy at the Bristol Oncology Unit, Bristol, UK in 1998 United Kingdom 66.3 Public Gc00785 Gi00603 138810 001524_GCAT 522373 30351 642555161 4851 4386 1 0 NC_010943 NCBI, Sanger Institute Sanger Institute, Univ of Bristol Genome Biology 9, R74 June 9, 2008 Parkhill J Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus equi BACTERIAL Streptococcus equi equi 4047 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Medical Strangles Host Facultative Coccus-shaped Pairs, Chains Nonmotile Nonsporulating Mesophile 37 horse with strangles from New Forest, UK United Kingdom 41 Public Gc00971 Gi00606 159778 001535_GCAT 553482 30765 2253 2243 1 0 NC_012471 NCBI, Sanger Institute Sanger Institute, Univ of Cambridge, Univ of Newcastle The Home of Rest for Horses PLoS Pathogen 5, E1000346 March 27, 2009 Parkhill J Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus uberis BACTERIAL Streptococcus uberis 0140J Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Medical Mastitis Host Facultative Coccus-shaped Chains, Pairs Nonmotile Nonsporulating Mesophile 37 clinical bovine mastitis case United Kingdom 40 Public Gc00948 Gi00625 001571_GCAT 218495 353 643348578 1852 1760 1 0 NC_012004 NCBI, Sanger Institute Sanger Institute, Univ of Cambridge, Univ of Warwick, Univ of Newcastle Beowulf Genomics BMC Genomics 10, :54 January 28, 2009 Parkhill J Bacteria Firmicutes Lactobacillales Bacilli Streptococcaceae Streptococcus Streptococcus equi BACTERIAL Streptococcus equi zooepidemicus H70 Genome FIRMICUTES Complete Complete and Published Animal Pathogen, Cattle Pathogen, Medical, Swine Pathogen Opportunistic infection Host Facultative Coccus-shaped Chains, Pairs Nonmotile Nonsporulating Mesophile 37 Nasal swab taken from a healthy Thoroughbred racehorse from Newmarket, UK United Kingdom 41 Public Gc00970 Gi00607 105978 001572_GCAT 40041 30767 2149 2058 1 0 NC_012470 NCBI, Sanger Institute Sanger Institute, Univ of Cambridge, Animal Health Trust HBLB PLoS Pathogen 5, E1000346 March 27, 2009 Parkhill J Bacteria Aquificae Aquificales Aquificae (class) Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium azorense BACTERIAL Sulfurihydrogenibium azorense Az-Fu1 JCM 12773, OCM 840 Genome AQUIFICAE Complete Complete and Published Biotechnological None Soil Facultative Rod-shaped Filaments, Pairs, Singles Motile Nonsporulating Heterotroph Thermophile Terrestrial hot spring from Furnas, Azores Portugal USA 32 Public Gc00937 Gi00634 71370 001581_GCAT 204536 12529 1640 17125 1 0 NC_012438 NCBI J. Craig Venter Institute, Portland State Univ NSF J. Bacteriology 191, 1992-1993 March 25, 2009 Reysenbach AL Bacteria Aquificae Aquificales Aquificae (class) Hydrogenothermaceae Sulfurihydrogenibium Sulfurihydrogenibium sp. YO3AOP1 BACTERIAL Sulfurihydrogenibium sp. YO3AOP1 Genome AQUIFICAE Complete Complete and Published Biotechnological None Soil Facultative Rod-shaped Motile Chemolithoautotroph, Heterotroph Thermophile Soil from Obsidian Pool in Yellowstone National Park, USA USA 32 Public Gc00808 Gi01984 289247 002611_GCAT 436114 18889 642555165 1838 1823 1 0 NC_010730 NCBI DOE Joint Genome Institute J. Bacteriology Epub May 21, 2008 Mead D Bacteria Cyanobacteria Chroococcales Synechococcus BACTERIAL Synechococcus sp. PCC 7002 PCC 7002, ATCC 27264 Genome CYANOBACTERIA Complete Complete and Published Biotechnological, Ocean carbon cycle None Marine, Mud Facultative Coccus-shaped Motile Photoautotroph, Photosynthetic Mesophile 38 1961 from a mud sample that came from the fish pens from Magueyes Island in Puerto Rico China 49 Public Gc00746 Gi00640 17081 001584_GCAT 32049 28247 641522654 3008 2823 1 6 NC_010475 NCBI, PSU Penn State Univ, Beijing Univ Unpublished March 14, 2008 Zhao J Bacteria Proteobacteria Rhodocyclales Betaproteobacteria Rhodocyclaceae Thauera Thauera sp. MZ1T BACTERIAL Thauera sp. MZ1T Genome PROTEOBACTERIA-BETA Complete Complete and Published Biotechnological, Ecological, Environmental None Fresh water, Wastewater Facultative Rod-shaped Motile Chemolithoautotroph Mesophile Wastewater treatment plant USA 68 Public Gc00901 Gi01570 6758 001599_GCAT 85643 20091 643348579 2621 4165 1 1 NC_011662 NCBI DOE Joint Genome Institute DOE Sayler GS Bacteria Firmicutes Thermoanaerobacterales Clostridia Thermoanaerobacteraceae Thermoanaerobacter Thermoanaerobacter pseudethanolicus BACTERIAL Thermoanaerobacter pseudoethanolicus 39E 454, Sanger ATCC 33223, DSM 2355 Genome FIRMICUTES Complete Complete and Published Sugars fermentor Bioenergy, Bioenergy, Biotechnological, Energy production, Ethanol production None Fresh water, Hot spring Anaerobe Rod-shaped Motile Sporulating Thermophile 65 Thermal springs in Yellowstone National Park USA 34.5 Public Gc00718 Gi00653 259586 001600_GCAT 340099 13901 641522655 2362 2427 1 0 NC_010321 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished February 5, 2008 Fields M Bacteria Nitrospirae Nitrospirales Nitrospira (class) Nitrospiraceae Thermodesulfovibrio Thermodesulfovibrio yellowstonii BACTERIAL Thermodesulfovibrio yellowstonii DSM 11347 DSM 11347, ATCC 51303 Genome NITROSPIRAE Complete Complete and Published Evolutionary None Fresh water Curved-shaped Motile Nonsporulating Thermophile 65 Thermal vent in Yellowstone Lake in Wyoming USA 34 Public Gc00864 Gi00736 320868 001604_GCAT 289376 30733 643348581 2003 2033 1 0 NC_011296 NCBI J. Craig Venter Institute NSF Unpublished September 26, 2008 Sutton G Bacteria Chloroflexi Thermomicrobiales Thermomicrobia (class) Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum BACTERIAL Thermomicrobium roseum DSM 5159 9.7x DSM 5159 Genome CHLOROFLEXI Complete Complete and Published Evolutionary, Tree of Life None Aerobe Rod-shaped Pairs, Singles Nonmotile Nonsporulating Thermophile 70 Toadstool Spring in Yellowstone National Park USA 63.6 Public Gc00949 Gi00735 001606_GCAT 309801 12533 2006 1925 1 1 NC_011959 NCBI J. Craig Venter Institute NSF PLoS ONE 4, e4207 January 16, 2009 Eisen J Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Thermotoga Thermotoga neapolitana BACTERIAL Thermotoga neapolitana DSM 4359 ATCC 49045, DSM4359, KCCM 41025 Genome THERMOTOGAE Complete Complete and Published Biotechnological, Energy production, Hydrogen production None Fresh water Anaerobe Rod-shaped Motile Nonsporulating Heterotroph Hyperthermophile 70-75 Black smoker in the bay near Naples Italy in 1986 Korea 46 Public Gc00944 Gi02531 41353 003257_GCAT 309803 21023 643348584 1884 1988 1 0 NC_011978 NCBI Genotech corp. Unpublished January 27, 2009 Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Thermotoga Thermotoga sp. RQ2 BACTERIAL Thermotoga sp. RQ2 Genome THERMOTOGAE Complete Complete and Published Biotechnological, Evolutionary None Fresh water Anaerobe Rod-shaped Motile Nonsporulating Heterotroph Hyperthermophile 76 - 82 Geothermally heated seafloor in the Azores USA 46 Public Gc00749 Gi01985 114683 002612_GCAT 126740 19543 642487181 1877 1917 1 0 NC_010483 NCBI DOE Joint Genome Institute DOE Unpublished March 18, 2008 Noll K Bacteria Thermotogae Thermotogales Thermotogae (class) Thermotogaceae Thermosipho Thermosipho africanus BACTERIAL Thermosipho africanus TCF52B Genome THERMOTOGAE Complete Complete and Published Biotechnological, Evolutionary None Fresh water Anaerobe Rod-shaped Pairs, Singles Thermophile 75 Troll oil formation in the North Sea Canada 30 Public Gc00896 Gi01046 239462 001611_GCAT 484019 27767 643348583 2016 1911 1 0 NC_011653 NCBI, Genome Canada Genome Canada, Dalhousie Univ J. Bacteriology Epub December 10, 2008 Nesbo CL Bacteria Proteobacteria Chromatiales Gammaproteobacteria Ectothiorhodospiraceae Thioalkalivibrio Thioalkalivibrio sp. HL-EbGR7 BACTERIAL Thioalkalivibrio sp HL-EbGR7 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Biotechnological, Environmental None Fresh water Facultative Rod-shaped Motile Nonsporulating Chemolithoautotroph Mesophile Sulfide-oxidizing bioreactor USA 65 Public Gc00934 Gi01555 349593 001613_GCAT 396588 29177 643348585 3464 3283 1 0 NC_011901 NCBI DOE Joint Genome Institute DOE Unpublished January 13, 2009 Muyzer G Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Ureaplasma Ureaplasma parvum BACTERIAL Ureaplasma parvum sv 3, ATCC 27815 3 ATCC 27815 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Respiratory infection, Urinary tract infection Host Facultative Sphere-shaped Singles Nonmotile Mesophile USA 25.5 Public Gc00742 Gi01765 001651_GCAT 505682 19087 641522658 751 675 NC_010503 NCBI, JCVI J. Craig Venter Institute NIH-NIAID Unpublished February 26, 2008 Methe B Bacteria Tenericutes Mycoplasmatales Mollicutes Mycoplasmataceae Ureaplasma Ureaplasma urealyticum BACTERIAL Ureaplasma urealyticum Western, sv 10, ATCC 33699 10 ATCC 33699 Genome FIRMICUTES Complete Complete and Published Human Pathogen, Medical Chorioamnioitis, Infertility, Non-specific urethritis (NSU) Host, Urogenital tract Facultative Coccus-shaped Singles Nonmotile Mesophile 37 USA Public Gc00868 Gi01776 305377 001662_GCAT 565575 20247 643348586 874 1487 1 0 NC_011374 NCBI, JCVI J. Craig Venter Institute NIH-NIAID Unpublished October 16, 2008 Methe B Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Aliivibrio Aliivibrio salmonicida BACTERIAL Aliivibrio salmonicida LFI1238 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Fish Pathogen Hitra disease Fresh water Facultative Rod-shaped Motile Nonsporulating Heterotroph Psychrophile Atlantic cod from Hammerfest, Norway European Consortium 39 Public Gc00865 Gi00679 334678 001693_GCAT 316275 30703 4200 3808 2 4 NC_011312, NC_011313 NCBI, Sanger Institute, PRG Sanger Institute, NORSTRUCT, Univ of Tromso BMC Genomics 9:616 October 1, 2008 Thomson NR Bacteria Proteobacteria Vibrionales Gammaproteobacteria Vibrionaceae Vibrio Vibrio splendidus BACTERIAL Vibrio splendidus LGP32 CIP 107715 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Environmental, Fish Pathogen, Oyester Pathogen Vibriosis Fresh water Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile France 44 Public Gc00912 Gi01155 110371 001695_GCAT 575788 32815 643348587 5000 4431 2 0 NC_011744, NC_011753 NCBI, Institut Pasteur Institut Pasteur Environ Microbiology Epub December 17, 2008 Mazel D Bacteria Actinobacteria Bifidobacteriales Actinobacteria (class) Bifidobacteriaceae Bifidobacterium Bifidobacterium animalis BACTERIAL Bifidobacterium animalis lactis AD011 Genome ACTINOBACTERIA Complete Complete and Published Biotechnological, Food industry, Medical None Host, Human fecal, Intestinal microflora Anaerobe Rod-shaped Nonmotile Nonsporulating Mesophile 39 - 40 Human infant fecal sample Korea 60.5 Public Gc00888 Gi01988 002617_GCAT 442563 19423 643348515 1933 1528 1 0 NC_011835 NCBI KRIBB J Bacteriology 191, 678-679 January 6, 2009 Park H-S Bacteria Proteobacteria Thiotrichales Gammaproteobacteria Francisellaceae Francisella Francisella tularensis BACTERIAL Francisella tularensis mediasiatica FSC147 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Animal Pathogen, Biothreat, Human Pathogen, Medical Tularemia Fresh water, Host Aerobe Rod-shaped Singles Nonmotile Nonsporulating Mesophile Gerbil in central Asia USA 32.3 Public Gc00788 Gi01990 284100 002619_GCAT 441952 19571 641522629 1893 1501 1 0 NC_010677 NCBI Los Alamos National Laboratory, DOE Joint Genome Institute FOI Unpublished May 7, 2008 Brettin T Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xanthomonas Xanthomonas campestris BACTERIAL Xanthomonas campestris campestris B100 campestris Sanger Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Black rot Host Aerobe Rod-shaped Motile Mesophile 25 - 30 Germany 65 Public Gc00728 Gi00692 7897 001701_GCAT 340 29801 642555169 5079 4529 1 0 NC_010688 NCBI, Bielefeld Univ Bielefeld Univ BMBF J Biotechnology 134, 33-45 February 12, 2008 Puehler A Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa M12 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Citrus variegated chlorosis Host Aerobe Rod-shaped Singles Mesophile USA 51 Public Gc00748 Gi01665 261559 001708_GCAT 405440 17823 641522659 2475 2421 1 0 NC_010513 NCBI DOE Joint Genome Institute DOE Unpublished February 19, 2008 Chen J Bacteria Proteobacteria Xanthomonadales Gammaproteobacteria Xanthomonadaceae Xylella Xylella fastidiosa BACTERIAL Xylella fastidiosa M23 Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Agricultural, Plant Pathogen Citrus variegated chlorosis Host Aerobe Rod-shaped Singles Mesophile Almond tree in California USA 51 Public Gc00767 Gi01701 275126 001709_GCAT 405441 18457 641522660 2535 2351 1 1 NC_010577 NCBI DOE Joint Genome Institute DOE Unpublished April 11, 2008 Chen J Bacteria Proteobacteria Enterobacteriales Gammaproteobacteria Enterobacteriaceae Yersinia Yersinia pestis BACTERIAL Yersinia pestis Angola antiqua Sanger 8x Genome PROTEOBACTERIA-GAMMA Complete Complete and Published Human Pathogen, Medical, Rodent Pathogen Bubonic plague, Food poisoning, Gastroenteritis Host Facultative Rod-shaped Singles Motile Nonsporulating Heterotroph Mesophile USA 47 Public Gc00696 Gi01173 249864 001715_GCAT 349746 16067 641228512 4504 4532 1 2 NC_010159 NCBI J. Craig Venter Institute NIH-NIAID Unpublished December 12, 2007 Ravel J Bacteria Proteobacteria Myxococcales Deltaproteobacteria Myxococcaceae Anaeromyxobacter Anaeromyxobacter dehalogenans BACTERIAL Anaeromyxobacter dehalogenans 2CP-1 ATCC BAA-258 Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Environmental None Sediment, Soil Anaerobe Rod-shaped Motile Sporulating Heterotroph Mesophile Stream sediment near Lansing, Michigan USA 74 Public Gc00932 Gi01321 263579 001730_GCAT 455488 20095 643348507 5029 4473 1 0 NC_011891 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished January 12, 2009 Beliaev AS Bacteria Proteobacteria Myxococcales Deltaproteobacteria Myxococcaceae Anaeromyxobacter Anaeromyxobacter sp. K BACTERIAL Anaeromyxobacter sp K Sanger Genome PROTEOBACTERIA-DELTA Complete Complete and Published Bioremediation, Biotechnological, Environmental None Soil Anaerobe Rod-shaped Motile Sporulating Heterotroph Mesophile USA 74 Public Gc00848 Gi01323 241715 001732_GCAT 447217 19743 642555106 5061 4551 1 0 NC_011145 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished August 15, 2008 Beliaev A Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia ambifaria BACTERIAL Burkholderia ambifaria MC40-6 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Biocontrol, Biotechnological, Human Pathogen, Medical Cepacia syndrome Host, Rhizosphere, Rhizosphere-colonizing Facultative Rod-shaped Motile Nonsporulating Mesophile cystic fibrosis patient USA 66.4 Public Gc00761 Gi01324 263782 001736_GCAT 398577 17411 641522608 7339 6964 3 1 NC_010552, NC_010551, NC_010557 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished April 3, 2008 Tiedje J Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia cenocepacia BACTERIAL Burkholderia cenocepacia MC0-3 Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural, Human Pathogen, Medical, Plant Pathogen Chronic infection, Necrotizing Pneumonia Host Facultative Rod-shaped Motile Nonsporulating Mesophile Soil associated with maize roots USA 66.6 Public Gc00744 Gi01325 174527 001737_GCAT 406425 17929 641522609 7900 7254 3 0 NC_010512, NC_010515, NC_010508 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished March 13, 2008 Tiedje J Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia multivorans BACTERIAL Burkholderia multivorans ATCC 17616 454, Sanger ATCC 17616 Genome PROTEOBACTERIA-BETA Complete Complete and Published Human Pathogen, Medical Cepacia syndrome Host Facultative Rod-shaped Motile Nonsporulating Mesophile 37 USA 66.7 Public Gc00689 Gi01326 300050 001738_GCAT 395019 17407 641228482 6820 6453 3 1 NC_010087, NC_010084, NC_010086 NCBI, DOE Joint Genome Institute DOE Joint Genome Institute DOE Unpublished November 15, 2007 Bruce D Bacteria Proteobacteria Burkholderiales Betaproteobacteria Burkholderiaceae Burkholderia Burkholderia phymatum BACTERIAL Burkholderia phymatum STM815 Sanger 11x Genome PROTEOBACTERIA-BETA Complete Complete and Published Agricultural None Host, Soil Facultative Rod-shaped Motile Nonsporulating Mesophile Root nodule of Machaerium lunatum in French Guiana USA 62.3 Public Gc00775 Gi