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METAGENOME STUDY FILTERS
METAGENOME INFORMATION
Metagenome Information Filter:
Study Name
NCBI Taxonomy ID
NCBI Project Name
NCBI Project ID
SRA ID
Contact Name
Ecosystem
MATCHES
IS NOT
ALL
Engineered
Environmental
Host-associated
Ecosystem Category
MATCHES
IS NOT
ALL
Air
Annelida
Aquatic
Arthropoda
Bioremediation
Biotransformation
Birds
Cnidaria
Culture
Fish
Food production
Human
Mammals
Microbial
Modeled
Mollusca
Plants
Porifera
Solid waste
Terrestrial
Unclassified
Wastewater
Ecosystem Type
MATCHES
IS NOT
ALL
Archaea
Bacteria
Bacterial
Composting
Deep subsurface
Digestive system
Dinoflagellates
Fermented vegetables
Freshwater
Hydrocarbon
Indoor Air
Industrial wastewater
Integument
Intracellular endosymbionts
Marine
Mixed alcohol bioreactor
Non-marine Saline and Alkaline
Nutrient removal
Outdoor Air
Phylloplane
Protists
Reproductive system
Respiratory system
Rhizoplane
Rock-dwelling (subaerial biofilms)
Shell
Simulated communities (microbial mixture)
Simulated communities (sequence read mixture)
Skin
Soil
Symbiotic fungal gardens and galleries
Terephthalate
Tetrachloroethylene and derivatives
Thermal springs
Unclassified
Ecosystem Subtype
MATCHES
IS NOT
ALL
Algal farm
Alkaline
Benzene
Biological phosphorus removal
Ceca
Chloroethene
Clay
Cold (below 25C)
Cold seeps
Crop
Cuticle
Dissolved organics (aerobic)
Drinking water
Egg capsule
Endolithic
Endophytes
Endosymbionts
Epiphytes
Female
Fossil
Fungus gallery
Fungus garden
Gills
Grass
Groundwater
Gut
Hindgut
Hot (42-90C)
Hydrothermal vents
Ice
Intertidal zone
Intestine
Large intestine
Lentic
Loam
Lotic
Medial distal leg
Microbialites
Midgut
Naris
Nasopharyngeal
Near-boiling (>90C)
Neritic zone
Nitrogen removal
Oceanic
Oral
Plasmids
Primary
Pulmonary system
Retroauricular crease
Saline
Salt crystallizer ponds
Sand
Sanger
Silt
Slime
Small intestine
Stomach
Storm water
Tetrachloroethylene
Unclassified
Vagina
Viriome
Volar forearm
Warm (34-42C)
Wastewater
Wood
water
Specific Ecosystem
MATCHES
IS NOT
ALL
2x75
Acid Mine Drainage
Activated sludge
Agricultural
Alkaline
Anammox
Anterior nares
Aphotic zone
Athalassic
Attached/Keratinized gingiva
Bacteriomes
Bioreactor
Buccal mucosa
Cave water
Cecum
Contaminated
Delivery networks
Desert
Duodenal
Endoperitrophic space
Epibionts
Epilimnion
Estuary
Extracellular
Fecal
Garden dump
Glacier
Grasslands
Gut
Hard palate
Hypolimnion
Ice accretions
Introitus
Limnetic zone
Lumen
Microbial mats
Microbialites
Midpoint vagina
Mine
Mine drainage
Neutral
P3 segment
Palatine tonsils
Pelagic
Periodontal pockets
Pharynx
Photic zone
Posterior fornix
Proctodeal segment
Rectum
Saliva
Sanger
Sediment
Stool
Subgingival plaque
Supragingival plaque
Throat
Tongue dorsum
Uncharacterized
Unclassified
Vagina
Venous leg ulcers
Viriome
Whale fall
unclassified
Study Type
MATCHES
IS NOT
ALL
Metagenome
Metatranscriptome
Project Status
MATCHES
IS NOT
ALL
Complete and Published
complete
incomplete
Journal
MATCHES
IS NOT
ALL
Appl Environ Microbiology
Appl Microbiol Biotechnology
BMC Bioinformatics
BMC Genomics
DNA Research
Emerg Infect Dis
Environmental Microbiology
Genome Biology
Genome Research
ISME Journal
J Biotechnology
J Clinical Microbiology
J Invest Dermatology
Mol Syst Biol.
Nature
Nature Biotechnology
Nature Methods
PLoS Biology
PLoS ONE
PNAS
Sci Transl Med
Science
Unpublished
METAGENOME SAMPLE FILTERS
SAMPLE INFORMATION
Sample Information Filter:
Study Name
Study GOLD ID
Sample Name
NCBI Taxonomy ID
NCBI Project ID
NCBI Project Name
TraceDB ID
SRA ID
Description
Site
Collection Date
Strategy
Volume
Biomass
Source
Diversity
Ecosystem
MATCHES
IS NOT
ALL
Engineered
Environmental
Host-associated
Ecosystem Category
MATCHES
IS NOT
ALL
Air
Annelida
Aquatic
Arthropoda
Bioremediation
Biotransformation
Birds
Cnidaria
Culture
Fish
Food production
Human
Mammals
Microbial
Modeled
Mollusca
Plants
Porifera
Solid waste
Terrestrial
Unclassified
Wastewater
Ecosystem Type
MATCHES
IS NOT
ALL
Archaea
Bacteria
Bacterial
Composting
Deep subsurface
Digestive system
Dinoflagellates
Fermented vegetables
Freshwater
Hydrocarbon
Indoor Air
Industrial wastewater
Integument
Intracellular endosymbionts
Marine
Mixed alcohol bioreactor
Non-marine Saline and Alkaline
Nutrient removal
Outdoor Air
Phylloplane
Protists
Reproductive system
Respiratory system
Rhizoplane
Rock-dwelling (subaerial biofilms)
Shell
Simulated communities (microbial mixture)
Simulated communities (sequence read mixture)
Skin
Soil
Symbiotic fungal gardens and galleries
Terephthalate
Tetrachloroethylene and derivatives
Thermal springs
Unclassified
Ecosystem Subtype
MATCHES
IS NOT
ALL
Algal farm
Alkaline
Benzene
Biological phosphorus removal
Ceca
Chloroethene
Clay
Cold (below 25C)
Cold seeps
Crop
Cuticle
Dissolved organics (aerobic)
Drinking water
Egg capsule
Endolithic
Endophytes
Endosymbionts
Epiphytes
Female
Fossil
Fungus gallery
Fungus garden
Gills
Grass
Groundwater
Gut
Hindgut
Hot (42-90C)
Hydrothermal vents
Ice
Intertidal zone
Intestine
Large intestine
Lentic
Loam
Lotic
Medial distal leg
Microbialites
Midgut
Naris
Nasopharyngeal
Near-boiling (>90C)
Neritic zone
Nitrogen removal
Oceanic
Oral
Plasmids
Primary
Pulmonary system
Retroauricular crease
Saline
Salt crystallizer ponds
Sand
Sanger
Silt
Slime
Small intestine
Stomach
Storm water
Tetrachloroethylene
Unclassified
Vagina
Viriome
Volar forearm
Warm (34-42C)
Wastewater
Wood
water
Specific Ecosystem
MATCHES
IS NOT
ALL
2x75
Acid Mine Drainage
Activated sludge
Agricultural
Alkaline
Anammox
Anterior nares
Aphotic zone
Athalassic
Attached/Keratinized gingiva
Bacteriomes
Bioreactor
Buccal mucosa
Cave water
Cecum
Contaminated
Delivery networks
Desert
Duodenal
Endoperitrophic space
Epibionts
Epilimnion
Estuary
Extracellular
Fecal
Garden dump
Glacier
Grasslands
Gut
Hard palate
Hypolimnion
Ice accretions
Introitus
Limnetic zone
Lumen
Microbial mats
Microbialites
Midpoint vagina
Mine
Mine drainage
Neutral
P3 segment
Palatine tonsils
Pelagic
Periodontal pockets
Pharynx
Photic zone
Posterior fornix
Proctodeal segment
Rectum
Saliva
Sanger
Sediment
Stool
Subgingival plaque
Supragingival plaque
Throat
Tongue dorsum
Uncharacterized
Unclassified
Vagina
Venous leg ulcers
Viriome
Whale fall
unclassified
Isolation Country
MATCHES
IS NOT
ALL
Antarctic Ocean
Antarctica
Argentina
Atlantic Ocean
Australia
Austria
Bahamas
Brazil
Canada
Chile
China
Costa Rica
Croatia
France
Germany
Greece
India
Israel
Italy
Japan
Korea
Malaysia
Mexico
Netherlands
Norway
Pacific Ocean
Pakistan
Panama
Peru
Puerto Rico
Russia
Singapore
South Africa
Spain
Sweden
Switzerland
Thailand
Tobago
Turkey
USA
United Kingdom
Venezuela
SEQUENCING INFORMATION
Sequencing Information Filter:
Library Method
Assembly Method
Binning Method
Gene Calling Method
Sequencing Country
MATCHES
IS NOT
ALL
Australia
Austria
Brazil
Canada
China
France
Germany
India
International
Israel
Japan
Korea
Malaysia
Mexico
Netherlands
Norway
Singapore
Spain
Sweden
Switzerland
Thailand
USA
United Kingdom
Sequencing Center
MATCHES
IS NOT
ALL
454 Life Sciences
Allegheny-Singer Research Institute
Argonne National Laboratory
Arizona Genomics Institute
Auburn Univ
Australian Genome Alliance
BCM-HGSC
Beijing Genomics Institute
Berkeley Univ
Bielefeld Univ
Broad Institute
CBMSO
CCMP - National Center for Culture of Marine Phytoplankton
Cardiff Univ
Center of Marine Biotechnology
Centre for Ecology & Hydrology
Chinese Academy of Sciences
Chung-Ang Univ
Colorado School of Mines
Cornell Univ
DOE Joint Genome Institute
Daphnia Genomics Consortium
Duke Univ
ETHZ (Swiss Federal Institute of Technology, Zurich)
GATC Biotech
GIRC
Genome Institute of Singapore
Genoscope
Goettingen Genomics Laboratory
Harvard Univ
Hiroshima Univ
IMEDEA
Illumina Inc.
J. Craig Venter Institute
JAMSTEC
KRIBB
MBRI
Macrogen
Marine Biological Laboratory
Max Planck Institute
Michigan State Univ
NEERI - National Environmental Engineering Research Institute (India)
NIBR -National Institute of Biological Resources (Korea)
NIH Intramural Sequencing Center (NISC)
NRC
National Center for Genetic Engineering and Biotechnology Thailand
Osaka Univ
Penn State Univ
Purdue Univ
RIKEN
Raritan Valley Community College
Royal Institute of Technology, Stockholm
San Diego State Univ
Sant Gadge Baba Amravati Univ
Spanish Council for Research CSIC, Centro Estudios Avanzados de Blanes, Blanes-Girona
SymBio Corporation
UCSB
UCSD
USDA
Univ Blaise Pascal
Univ Federal de Santa Catarina
Univ Miguel Hernandez
Univ North Carolina Charlote
Univ de Lyon
Univ de Rennes
Univ of Adelaide
Univ of Alaska Fairbanks
Univ of Bergen
Univ of British Columbia
Univ of California, Berkeley
Univ of Colorado
Univ of Delaware
Univ of Florida
Univ of Georgia
Univ of Goettingen
Univ of Hawaii at Manoa
Univ of Illinois at Urbana-Champaign
Univ of Leicester
Univ of Maryland, IGS
Univ of Michigan
Univ of Minnesota
Univ of Oklahoma
Univ of Oslo
Univ of Pennsylvania
Univ of South California
Univ of South Florida
Univ of Tokyo
Univ of Vienna
Univ of Wisconsin-Madison
Virginia Commonwealth Univ
Washington Univ
West Penn Allegheny Health System
Yale Univ
Sequencing Status
MATCHES
IS NOT
ALL
Awaiting DNA
Awaiting Sample
Complete
DNA Received
Draft
In progress
ENVIRONMENTAL METADATA
Environmental Metadata Filter:
Geographic Location
Sample Isolation Site
Latitude
=
≠
>
<
≥
≤
Longitude
=
≠
>
<
≥
≤
Temperature Range
MATCHES
IS NOT
ALL
Hyperthermophile
Mesophile
Psychrophile
Psychrotrophic
Thermophile
Salinity
MATCHES
IS NOT
ALL
Halophile
HOST METADATA
Host Metadata Filter:
Host Taxon ID
Host Name
Host Gender
MATCHES
IS NOT
ALL
Female
Male
female
hermaphrodite
male castrate
Host Race
MATCHES
IS NOT
ALL
Asian - Japanese
Caucasian
Host Health Condition
MATCHES
IS NOT
ALL
Cystic fibrosis patient in a non-exacerbated state
Diet-Induced Obesity
Healthy
Humanized gut
Influenza A
Influenza virus and norovirus
Norovirus
Patient with Crohn's Disease
Patient with diarrhea
Venous leg ulcers
healthy
lean and obese
lean mouse, leptin genotype +/+
lean mouse, leptin genotype ob/+
obese mouse, leptin genotype ob/ob
partially bleached
sick
Host Medication
MATCHES
IS NOT
ALL
ASP 250
Without taken antibiotics for at least one year prior to the sampling
Host Body Site
MATCHES
IS NOT
ALL
Airways
Gastrointestinal tract
Oral
Skin
Urogenital tract
Body Subsite
MATCHES
IS NOT
ALL
Attached/Keratinized gingiva
Buccal mucosa
Hard palate
Intestinal tract
Nares
Palatine tonsils
Posterior fornix
Retroauricular crease
Subgingival plaque
Supragingival plaque
Throat
Tongue dorsum
Vaginal
Vaginal introitus
Body Product
MATCHES
IS NOT
ALL
Feces
Saliva
Stool
