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Genomics News
Genome Projects
Genome Sequencing Project Sources
Genomic Links

Hot Links
GenomeBank The NERC Environmental Bioinformatics Centre Genomic Standards Consortium		Mikrobiokosmos Initiative
Genomic News
AAAS News Access Excellence D Agbiotechnet BBC SciTech D Bioinform.Com M bioinformatik.de BioInformatics BioInformer BioMedNet News D Bio Online D BioPharm magazine M BIOSCI BioSpace D BioSpace articles D Biotech. Industry Organization M Biotechfind Search Engine Biotechnology Patents BioWorld ONLINE CNN SciTech D Emerging Technologies @Businessweek D Genome Biology Genetic Engineering News Genome News-Nature Genome Project News @ORNL M Genome Technology M D: Daily News		GenomeWeb D Genomics Today @PhRMA D GNN @TIGR W HMS Beagle M Human Genome Calendar D MedWebPlus Nature netguide NCBI News, a quarterly newsletter NCBI Genomes News & Events @ NIH NewScientist D ScienceDaily D SciDevNet D SciWeb D ScienceWeek Science News SciQuest.com The BioInformatics Resource The Bio-Web W The Scientist D Today News from Sci.AmericanD USDA D Wellcome Trust News M What's New @ASM D M: Monthly Issues
Genome Projects
A Quick Guide to Sequenced Genomes @ GNN
NCBI	Complete Microbial Genomes In progress Microbial Genomes Plasmids, Phages, Viruses, Organelle, Viroids, Genomes	EBI	Complete Microbial Genomes Plasmids, Phages, Viruses, Organelle, Viroids, Genomes
TIGR	Complete Microbial Genomes In progress Microbial Genomes	JGI	Microbial Genomes Eukaryotic Genomes
Sequencing Projects @ The Sanger Institute		Sequencing Projects @ J Craig Venter Institute
Microbial Genome Projects @ Broad Institute		Genome projects @ Genoscope

Genome Sequencing Project Sources
Genome projects @Pasteur Genome projects @Genoscope Microbial Genomics - Awards Listing @NSF for 2001-2003 Microbial Genomes @Kitasato University Microbial Genomes @NCBI Microbial Genomes @Sanger centre Production Status @TIGR Unfinished Microbial Genomes @TIGR Microbial Genomes @JGI Microbial Genomes @NITE GenomesToLife @DOE Microbial Genomes @INFOBIOGEN		Genomics of Plant-Associated Microbes Organisms of High Priority for Sequencing APS Microbial Genome Sequencing Priority List Genome Sequencing Proposals @NHGRI Microbial Genome Program @DOE Microbial Genome Projects @Venter Institute Microbial Genome Projects @Moore Foundation Microbial Genome Projects @Broad Institute Microbial Genome Projects @Goettingen Univ Quick Guide to Genomes @GNN Facts About Genome Sequencing NIAID funded projects
Genomic Links
Genome Sequencing Centers General Genome Databases Genome Analysis Databases Other Genome Projects Infectious Diseases Genomics-Biotech companies General Databases Protein Family Databases Biocomputing servers		Sequence-Reference Retrieval Systems Sequence Homology Allignments Motifs -Domains Metabolic Pathways Protein Structure Phylogenetic analysis Protein Interactions Gene DNA - RNA
Genome Sequencing Centers
AGOWA ASTRA Bases Sequenced / Data sources HGSC Baylor College of Medicine Brookhaven National Lab Celera Cold Spring Harbor Laboratory Cornell Genomics Initiative Diversa Corporation FAPESP São Paulo State Research Agency GÉNÉTHON Genome Research and Sequencing Laboratory @Italy Genome Therapeutics Genoscope George Mason University GESTEC Center for Genetics in Medicine Goettingen Genomics Laboratory Integrated Genomics Inc. JENA @Germany JST Human Genome Sequencing Home Page Kazusa DNA Research Institute KDRI Lawrence Berkeley National Laboratory Lawrence Livemore National Laboratory LION Los Alamos National Lab McDermott Center for Human Growth and Development		Max-Planck-Institute for Biochemistry @Germany Max-Planck-Institute for Molecular Genetics @Germany MITI NITE Oak Ridge National Laboratory Pasteur Institute Sanger Center Stanford Human Genome Center STD Sequence Database @LANL The Human Genome Project at Columbia University THE JACKSON LABORATORY TIGR University of Alabama at Birmingham UC Berkeley University of Chicago University of Heidelberg University of Michigan University of Minnesota Center for Microbial Genomics University of Oklahoma University of Pennsylvania Center for Bioinformatics University of Texas University of Utah University of Washington @Seattle WA University of Wisconsin Uppsla Genome Sequencing Laboratory @University of Uppsala Washington University @St. Louis, MO Whitehead Institute for Genome Research Research
General Genome Databases
EMP The Enzymology Database MPW Metabolic Pathways EcoCyc FTP-server for the microbial genomes @NCBI Genobase Integration of molecular biology databases through Prolog NCGR Microbe site Beowulf Genomics @UK Genomes and Organisms @INFOBIOGEN List of other genome sites Microbial Genome Database for Comparative Analysis @Japan Microbial Genomics News Human Genome News Genome Information Broker for Microbial Genomes @Japan Species specific databases @Erasmus University, Netherlands Database Search Services @The Sanger Centre Pedant Genome Sequencing Centre Jena Genome Information Research Center @Osaka Univ. The Genome Page @the Bork group Sanger Centre home page Genome Projects @the Sander Group Hotlist GenomeNet WWW Server Weizmann Institute Genome and Bioinformatics TIGR Database Genome Center/KRIBB @Korea DOE DOE funded projects MICADO @France Genome Navigator @Germany INDIGO @France SIGMA graphical tool for viewing integrated genome maps Discussion Site on Genomics and Bioinformatics Bacterial Database Codon Usage Database HOST GENOMES Microbiology and Virology STD Sequence Databases @LANL Microbial Genome WWW HOME PAGE @JAPAN The University of Minnesota Biocatalysis/Biodegradation Database Genome databases @HGMP, UK DNA Structural Analysis of Complete Genomes and Chromosomes Environmental Genome Project THE JACKSON LABORATORY Australian National Genomic Information Service Plant Viruses Online MadBase a Networked Relational Database for Microbial Genomes Other Organisms Genome Databases Animal Genome Database in Japan TIGR/ATCC Microbial Genome Special Collection http://peds.mc.vanderbilt.edu/c_elegans/new_page_2.htm A List of Biotech-Related Information Resources AgBiotechNet - Links Plant Research International microbial-genomes Genome Databases on the Internet		The Genome Database Organisms Databases, Genome projects Pasteur Institute Department of Energy Microbial Cell Project Stanford Genomic Resources Human Genome Project Resources PIR Genomic Links @ASM Database Of Genome Sizes Genome Databases in Japan Parasite genome databases and genome research resources Animal Genome Database @JAPAN Genome Databases on the Internet Model Organism Databases Beowulf Genomics A Genome Database for Forest Trees Southampton Genetic Database Genome Sequencing Technologies Other Organisms Genome Databases Databases at the National Agricultural Library Bio Online: Databases and Research Tools Genome Workstation by Roslin Institute ABIM Organism Databases MICROSATELLITE MARKERS Genomes Statistics Complete Genomes MadBase Prokaryotic Genome Databases Menu BACs Bacterial Artificial Chromosomes Molecular Genetics Labs @CSMC Genome Database @DHPG, DE SALSA DNA and Protein Sequence Database Search @Norway COGsClusters of Orthologous Groups (@NCBI) Reconstruction of the Progenote @ETH-Zürich The Genome Database The Influenza Sequence Database @LANL the Leptospira Molecular Genetics Server Biotechnology Information Center (BIC) The National Agricultural Library (NAL) US Department of Agriculture International Grass Genome Initiative Natural History Museum Parasitology Laboratory CliniWeb Pfizer Microbes HIV Sequence Database @LANL Genamics bioinformatik.de Institute of Forest Genetics Dendrome Project Bacterial Database by Tsute Chen, Species-Specific Databases @Weizmann Institute of Science Genome Databases on the Internet @Univ. Wisconsin BIOSCI comp-bio/bionet.biology.computational Newsgroup Archive CAB Collection of Addresses for Bioinformatics @CNRS
Genome Analysis Databases
ERGO @ Integrated Genomics KEGG Kyoto Encyclopedia of Genes and Genomes GeneQuiz WIT2 @ Argonne National Laboratory		MBGD Microbial Genome Database for Comparative Analysis @Japan Genome Channel @ORNL PEDANT MIPS
Other Genome Projects
AGOWA GmbH Animal Genome Database BeanGenes A Phaseolus/Vigna Database Bovine Genome Database Cattle Genome Database Cattle Genome Mapping Project University of Illinois NCSA Biotechnology Center Chicken (NAGRP) ChickGBASE Chicken Genome Mapping Dictyostelium The Dog Genome Project European Drosophila Genome Project Filarial Genome Network Homepage the Filarial Genome Network FishBase FlyBase FUGU GOATMAP GrainGenes		HORSEMAP Medakafish Mosquito Genomics GOBASE The Organelle Genome Database Parasite genome at Sanger Parasite Genomes Web Site Pig Genome Mapping Pig Genome Map (NAGRP) RATMAP The Rat Genome Database RATMAP @Japan Rice The United States Rice Genome Sequencing Project Sheep MAP Sheep Gene Mapping Swine Genome Tilapia Genome Project Xenopus Zebrafish_Oregon server Zebrafish_South Carolina server

Infectious Diseases

WHO
The"Bad Bug Book"
Food Safety @ NC State University
Center for Food Safety & Applied Nutrition
Laboratory Animal Resources Agent and Material Safety Information Manual
News Briefs and Epidemiological Bulletins @ University of Alberta, CA
The Greek System for Surveillance of Antimicrobial Resistance
Pathogen Detection Research at Pacific Northwest National Laboratory
Infectious Diseases Weblink
Emerging Infectious Diseases @National Center for Infectious Diseases
Malaria Database
Baron's Medical Microbiology textbook 4th edition
Bug Bytes
Tuberculosis
- tuberculosis (Mycobacterium tuberculosis)
- Vaccine Approaches to Tuberculosis
- Global Tuberculosis Programme
Legionnaire's Disease
- legionaire's disease (Legionella pneumophila)
- legionaire's disease
- Legionellosis
Periodontal disease
- Detection of Periodontal disease (Porphyromonas gingivalis)
- Periodontal disease & Blood-Clotting
CliniWeb International

EPIDEMIC @the American Museum of Natural History
Cholera and Epidemic Dysentery (Vibrio cholerae)
Cerebrospinal Meningitis (Meningococcal meningitis)
Leprosy (Mycobacterium leprae)
Typhoid fever (Salmonella typhimurium)
Diptheria (Corynebacterium diptheriae)
Pneumonia (Streptococcus pneumonia)
Ulcers (Helicobacter pylori)
Pumpkin wilt (Erwinia tracheiphila)
Rickettsial Diseases (Rickettsia prowazekii)
Prostatitis
Diseases General List
Malaria (Plasmodium sp.)
Trypanosomiasis (Trypanosoma sp.)
Schistosomiasis (Schistosoma sp.)
TSETransmissible Spongiform Encephalopathies
HIV
ASD
HIV
AIDS Knowledge Base
Haemorrhagic Fevers Dengue, Ebola
Influenza
Zoonotic Diseases
Polio Eradication
HPV Human papillomavirus

Genomics-Biotech Companies

ABTI
ACD Advanced Chemistry Development, Inc.
Affymetrix
Agouron Pharmaceuticals, Inc @La Jolla, CA
Allergan, INC. @Irvine, CA
Alliance Pharmaceutical Corp.
AlphaGene, Inc.
ALZA Corporation @Palo Alto, CA
Amersham
Amgen @Thousand Oaks, CA,
Amylin Pharmaceuticals, Inc. @San Diego, California
ApoCom, Inc.
Ares-Serono
ARIAD Pharmaceuticals, Inc.
Atheris Laboratories SA
Astra Arcus USA, Inc. @Worcester, MA
Aurora Biosciences Corporation @San Diego, CA
ATCG Biological Reagents
Atheris @Geneva, Switzerland
AxCell Biosciences Co. @Newtown, Pa
AXYS (Sequana + Axis) @San Francisco, California
Base4 Bioinformatics Home Page
Baxter International, Inc. @Deerfield, IL
Bayer @Leverkusen, Germany
Beckman Coulter, Inc.
Bio Balance Incorporated @New York
BioDiscovery, Inc.
Biogen @Cambridge, Massachusets
Bioinformatics Solutions Ltd.
BioMeda Corp.
Biomedical Computing, Inc.
Bionique Testing Laboratories, Inc @Saranac Lake, NY
Bio-Rad
BIOSIS
BIOSOFT
bioStrategies @Chicago, IL
BioSupplyNet @Plainview, NY
Biosystematica @Devon, UK
BioTools, Inc.
BTC BioSpecifics Technology Co.
Biotransplant, Inc. @Charlestown, MA
BioVisioN GmbH
Boehringer Mannheim Biochemicals & Roche
Brinkmann @Mississauga, ONT
BTX Genetronics, Inc @San Diego, CA
Cadus Pharmaceutical Corp. @Tarrytown, NY
Caesar Software LLC
Calbiochem-Novabiochem Corporation
Calgene, Inc. @Davis, California
CallistoGen AG
Caltech Genome Research Laboratory @Pasadena, CA
C.B.S. Scientific @Solana Beach, CA
Celera Genomics Co.
Centocor, Inc.
Chiron Corporation @Emeryville, CA
Ciphergen Biosystems, Inc. @Palo Alto, CA
Clontech @Palo Alto, California
Cognetix, Inc.
Cognia Corporation, Inc.
CuraGen Corp. @New Haven, CT
CYTImmune Sciences @College Park, Maryland
deCODE Genetics, Inc.
DEKALB Genetics Corp. @DeKalb, IL
DepoTech @San Diego, CA
Destiny Pharma Ltd.
Diedre Moire Corporation, Inc. @Robbinsville, N.J.
DGT- Digital Gene Technologies, Inc.
Display Systems Biotechnology
Diversa Corporation @San Diego, CA
DNASTAR @Madison, WI
DoubleTwist, Inc. (Pangea Systems)
DuPont @Wilmington, DE
eBioinformatics
Eli Lilly @Indianapolis, Indiana
Emerald BioStructures, Inc.
EnCompass
Entelechon GmbH
Enzon, Inc.
Epicentre @Madison, WI
Epidauros Biotechnologie AG
Eppendorf
EraGen Biosciences
EVOTEC BioSystems AG
Evolutionary BioInformatics
Exelixis Pharmaceuticals, Inc. @San Francisco, CA
Fermentas
Fisher Scientific
GelTex Pharmaceuticals Inc.
Genaissance Pharmaceuticals, Inc.
Genamics
GeneBio Geneva Bioinformatics SA
Genencor International Inc.
GCG
Gene Codes Corporation
Gene Data @Basel, Switzerland
Gene-IT @France
Genentech, Inc @San Francisco, California
GÉNÉTHON @Evry, FRANCE
Genetics Institute @Cambridge, MA
GENETYX @Japan
Genomatix Software GmbH
Genome Systems
Genomic Solutions, Inc.
Genomica Corporation
Genset
GS Genome Systems Inc.
GTC Genome Therapeutics Co. @Waltham, MA
GENOMYX @Palo Alto, CA
Gen-Probe Incorporated @San Diego, CA
GENSET
Genetrace @Alameda, CA
Geron Co.

Genzyme
Geospiza, Inc. @Seattle, WA
Gilead Sciences @Foster City, CA
Glaxo Wellcome @London, UK
Glen Research Corporation @Sterling, VA
Gryphon Sciences
Helix Biopharma Co.
Hitachi Hitachi USA Genetic Systems
HRI - Helix Research Institute, Inc. @JP
Hoechst Marion Roussel @Bridgewater, NJ
Human Genome Sciences Inc. (HGSI) @Rockville, MD
Hybaid @Middlesex, UK
Hybrigenics SA
Hyseq Inc. @Sunnyvale, CA
ICOS Corp. @Bothell, WA
IGEN, Inc @Gaithersburg, MD
Immunetics, Inc. @Cambridge, MA
Incyte Pharmaceuticals Inc. @Palo Alto, CA
InforMax, Inc. @North Bethesda, MD
Inpharmatica
Integrated Genomics @Chicago, IL
Invitrogen
Lambda-Plus SA
LAROVA Biochemie GmbH
LSB Large Scale Biology Co. @Rockville, MD
Lexicon Genetics Inc. @The Woodlands, TX
Life Technologies-GIBCO
LION bioscience AG @Heidelberg, Germany
Matrix Science Ltd
Maxygen, Inc. @Santa Clara, CA
Merck & Co. @San Francisco, California
MetaXen
MDL MDL Information Systems, Inc.
MediGenomix GmbH
Memorec Medical Molecular Research Cologne GmbH
Metaphorics LLC
Microcrite
Millenium Pharmaceuticals, Inc. @Cambridge, MA
Millipore
Molecular Dynamics @Sunnyvale, CA
MSI Molecular Simulations, Inc.
MOLOGEN GmbH
MolSoft
MONSANTO
Myriad Genetics, Inc.
NBI National Biosciences
NGI National Genetics Institute
Neomorphic Software, Inc.
NetGenics
Net-ID, Inc.
New England Biolabs
Novagen
Novartis Agribusiness Biotechnology Research, Inc. @Basel, Switzerland
Novo Nordisk
Otsuka Pharmaceutical Co.
Oxford Molecular Group
Pangea Systems @Palo Alto, CA
Paracel, Inc.
PAREXEL
PathoGenesis Corp.
Peptech Ltd.
Perkin Elmer @Norwalk, CT
Pfizer @Connecticut
PharmComm, Inc.
PharMingen @San Diego, CA
Pharsight Co.
Phoretix
Pierce
Pioneer Hi-Bred International, Inc
PremierBiosoft
Primm Labs Corp.
Promega @Madison, Wisconsin
Proteome, Inc.
ProteoMetrics
PSL Proteome Systems Ltd
ProZyme, Inc.
QIAGEN GmbH
Quintiles Corp.
Repligen Co.
Research Genetics, Inc. @Huntsville,AL
Roche Bioscience @Palo Alto, CA
Sanofi-Synthelabo
Sequana Therapeutics, Inc.
Sequenom Industrial Genomics
SeqWrigh
Shire Pharmaceuticals Group plc
SIGMA
SkeleTech Inc. @Kirkland, WA
SmithKline Beecham
STRATAGENE
StressGen Biotechnologies
Surfacine
Symbios Inc
Synomics Ltd
SBI Structural Bioinformatics, Inc.
TGC The GENOMES.COMpany @St. Paule, MN
TimeLogic Corp. Bioinformatics Division
THERMOGENESIS CORP @Rancho Cordova, CA
TopLab GmbH @Martinsried, Germany
TRIAD
Tripos Inc.
Tularik
UVP Ultra-Violet Products
Variagenics
Vertex Pharmaceuticals
WebGenetics
WITA
Worthington Biochemical Co.
Xenometrix, Inc.
Xerion Pharmaceuticals GmbH
Yamanouchi Pharmaceuticals Co.
Zycos, Inc.

General Databases

PDSP DRUG DATABASE
proteins with special motifs @Proteome, Inc.
Biocatalysis/Biodegradation Database @Univ of Minnesota
DNA-Binding Protein Database
Biological Structure Resource
ProClass Database
Database of macromolecular motions
EBI Databases
TFSEARCH Searching Transcription Factor Binding Sites
GRBase The Growth Regulation Database
EGAD the Expressed Gene Anatomy Database @TIGR
The I.M.A.G.E Consortium
BodyMap Anatomical Expression Database of Human Genes
SAGE Serial Analysis of Gene Expression
Bioinformatics Databases
Genetics and BioMedical Databases
CGAP Cancer Genome Anatomy Project
Databanks
GenBank
PIR-Prot
SWISS-Prot
Protein Data Bank
Ribosomal Database
Ribosomal Database Project II
GenCANS-RDP System for phylogenetic classification of ribosomal RNA sequences
The RNA world @IMB Jena
The RNase P db
The Image Library of Biological Macromolecules
Chromatin Structure & Function Page
EPD hierarchical classification
EcoCyc
Basal Transcription Factors
American Crystallographic Association
FlyBase
The World-Wide Web Virtual Library: Biosciences
MUTATION DATABASE WEBSITE
TransTerm Translational Signal db
TransTerm - Species List
The Antibody Resource Page
Pfam multiple sequence alignments and HMM-profiles of protein domains
The rRNA WWW server
The RNA Modification Database
Nucleic Acid Database
Group I Intron Database
RNA Secondary Structures
Small RNA database
The Transgenic/Targeted Mutation Database
Developmental Studies Hybridoma Bank
The DOE Human Subjects Database
EUROPEAN COLLECTION OF ANIMAL CELL CULTURES
Viral Diseases of Insects in the Literature (VIDIL)
GenLink Telomere Resource
Transgenic and Targeted Mutant Animal Database
The Tumor Gene Database
Clinical Genetics Knowledge Base
UW Pathology Cytogenetics Resources & Genome Project Related Tools
THE CHROMOSOME ABNORMALITY DATABASE
Databases at the National Agricultural Library
ACeDB Databases
Aberrant Splicing Database
Cross-referencing the Genetics of Model Organisms with Mammalian Phenotypes
XLocus Database
The Dysmorphic Human-Mouse Homology Database (DHMHD)
Vertebrate Comparative Database
ABIM Organism Databases
Model Organism Databases
IDEAS

Amos' WWW links page
Bipartite NLS Locator Nuclear Localization Signal
PROSITE query for NLS Nuclear Localization Signals
Protein Motions Database
TRANSFAC: Transcription factors db
TRRD: Transcription regulatory region db
TRRD Database of Transcription Regulatory Regions on Eukaryotic Genomes
Hyper-Neuroblast Map
Bio Online: Databases and Research Tools
GeneCards
Biochemistry The Building Blocks of Life
Molecular Biology Protocols
Vector DB
Amino Acid Information
HotMolecBase
DPInteract: DNA-Proteins interactions db
FSSP database all protein chains longer than 30 residues
Dali/FSSP Touring Protein fold space
SCOPStructural Classification of Proteins
Molecules R US Utility
ProLinkan integrated database of protein structure, sequence homolog, and functional pattern information
ProDom Database Protein Domain db
Drosophila Nervous System Index
ATCC home page
MadBase a Networked Relational Database for Microbial Genomes
PhosphoBase phosphorylation sites db
PROMISE information on prosthetic centres and metal ions in protein active sites db (@UK)
MHCPEP MHC-binding peptides db (@Australia)
OOTFD Object Orianted Transcription Factors db
PLACE plant cis-acting regulatory DNA elements db (@Japan)
EPD Eukaryotic Promoter db
Codon Usage tabulated from the international sequence dbs (@Japan)
SWISS-2DPAGE
ISSD Integrated Sequence-Structure db
Blocks for protein homology detection
PRINTS protein fingerprint db (@UK)
IMGT international ImMunoGeneTics db
SV40 large tumor antigen db
E1A adenovirus 5 E1A mutations db
MUTBASE mutation spectra db for bacterial and mammalian genes
EpoDB db of genes expressed during vertebrate erythropoiesis
HGMD Human gene mutation db
Haemophilia B db of point mutations and short additions and deletions
RNA modification db
UTRdb a specialized db of 5' and 3'-untranslated regions of eukaryotic mRNAs (@Italy)
The viroid and viroid-like RNA db
LSU-rRNA db on the structure of large ribosomal subunit RNA
SSU-rRNA db on the structure of small ribosomal subunit RNA
SRPDB Signal Recognition Particle db
U-insertion
guide RNA db
tmRDB
tmRNA
Small RNA db
5s rRNA db
tRNA compilation of sequences
GOBASE Organelle Genome db
MGD Mouse Genome db
Human mtDNA control region sequences
MmtDNA Metazoa mitochondrial DNA variants db
mitBASE mitochondrial genome db
MITOMAP human mitochondrial genome db
IXDB an X-chromosome integrated db
HuGeMap a distributed and integrated Human Genome Map db
RHdb the Radiation Hybrid db (@EBI)
GDB the Human Genome db
GIF-DB molecular interactions in Drosophila

Protein Family Databases

Uncharacterized Protein Families @Expacy
Protein Families @INFOBIOGEN
Protein Family Browser @MIPS
AARS @Expacy
AARS
r-proteins @Expacy
Translation Initiation proteins @Expacy
7-transmembrane G-linked receptor entries @Expacy
Restriction enzyme and methylase entries @Expacy
Classification of metallothioneins @Expacy
Metallothioneins @Univ of Zurich
Classification of peptidase families @Expacy
MEROPS the peptidase database @Babraham Institute, UK
Classification of glycosyl hydrolases @Expacy
Glycosyl Transferases @CNRS, France
Glycoside Hydrolases @CNRS, France
Polysaccharide Lyases @CNRS, France
Carbohydrate Esterases @CNRS, France
Phosphodiesterase gene families
Glucuronosyltransferases @Univ of S. Australia
Alcohol dehydrogenase nomenclature
SNF2 family of proteins by Jonathan A. Eisen
Topoisomerases
Thyroid Hormone Receptors
NRR The Nuclear Receptor Resource
Kinesins
Chaperonins
Cytokines and Receptors
Accession numbers for FAD-dependent pyridine nucleotide oxidoreductases
Esterases

ECCE the E. coli cell envelope database
Protein kinases
Protein Kinases
RecA by Jonathan A. Eisen
G protein-coupled receptors
Glucoamylases by Pedro M. Coutinho
Mutator transposons by Jonathan A. Eisen
Olfactory Receptors
The Gonadotropin Releasing Hormones by Jonathan A. Eisen
Cytokine Family cDNA Database
The Homeobox Page
The Cytoskeletal Protein Interactions Database
The Chaperonin Home Page
PAX family
the Cytokines Web
Malaria Antigen Database
Globin Gene Server
LIMB dbase
AAA Server Home Page: AAA family of ATPases server
Histones
Histo :proteins of the Major Histocompatibility Complex (MHC)
GPCRDB an information system for G protein-coupled receptors
Cytochrome P450 Homepage
Gene List for Cell Division @UNIV OF UTAH
Gene List for Cell Signaling @UNIV OF UTAH
Gene List for Cell Structure @UNIV OF UTAH
Gene List for Homeostasis @UNIV OF UTAH
Gene List for Gene Expression @UNIV OF UTAH
Gene List for Metabolism @UNIV OF UTAH
SPAD The Signaling PAthway Database @Japan

Biocomputing servers

WIT2
WIT2-Pro
KEGG
Genequiz
Pedant
NCBI
Complete Microbial Genomes @INFOBIOGEN
Uncomplete Microbial Genomes @INFOBIOGEN
SIGMA
Blast with unfinished microbial genomes @NCBI
Blast protein against the complete genomes
OU-ACGT
BAGS
SALSA
COG @NCBI
ORF Finder @NCBI
GenLang
Genomic tools @Sanger centre
ExPASy Tools
Database Searching @EBI
Bioinformatics software @Pasteur
Pôle Bio-Informatique Lyonnais @France

Sequence-Reference Retrieval Systems
Entrez Sequence Retrieval System- SRS ProClass Database ExPASy PROSITE	Query Databases @EBI GeneCards SEQNET DBGET

Sequence Homology - Allignments

PSI_BLAST @NCBI
BLAST2 @NCBI
BLAST @NCBI
WU-BLAST2 @EBI
Fasta3 @EBI
Blast2
FASTA
TFASTA
BLITZ Database Searches
Sequence similarity searches @EBI
GenQuest
GeneFIND
ClustalW
BOXSHADE 3.21
MultAlin
CLUSTALW @PBIL
MULTALIN @PBIL
Multiple Alignment @DEAMBULUM
Multiple Protein Sequence Analysis @PBIL
Consensus
Tools for Alignment
BCM Search Launcher
Divide-and-Conquer Multiple Sequence Alignment
DIALIGN 2

GeneDoc
The Multiple Alignment Sequence Editor
Bio-lirmm / Map123d
ToPLign
Match-Box Web Server 1.2
VSNS BioComputing Division Multiple Alignment Resource Page
AMAS
MSA
AE2
ALSCRIPT
DCSE
HOMOCHART
MALIGNED
MASE
MSE
NSEQTOOL
GDE
SeqVu
ShadyBox
DNA Stacks
ProMSED
SEAVIEW
Alignment Search software @EBI

Motifs - Domains
Pfam @Sanger HMM search in Pfam-A @Sanger Pfam @WU HMM @WU Prodom THE MEME SYSTEM ScanProsite BLOCK MAKER MOTIF Prosite search @PBIL Pattern search @PBIL BIOCCELERATOR @EMBL BCM Search Launcher Blocks WWW Server PRINTS FPAT Regular Expression Searches of the OWL Database	Protein Functional Analysis @BMERC HSSP Protein motifs DBMOTIF PMOTIF Sequence Scan RAMdbP Amino Acids Frequencies @PBIL Helix-Turn-Helix motif prediction @PBIL PATSCAN ProDom Multicoil Paircoils PROSITE FTHOM HOMOL @MIPS

Protein Structure
PDB @BNL CASP2 @Sanger The Dali server @EBI NDB Biological Structure Resource PDBsum @UK Protein Secondary Structure Prediction @BCM SCOP Macromolecular Structures @EBI CATH Helical Wheel with Java The PredictProtein server @EMBL RasMol Home Page PHD PREDICTION of COIL-COIL @PBIL	PREDICTION of COIL-COIL @PBIL DICROPROT @PBIL Protein Secondary Structure Prediction Macromolecular Structure Query CATH Antibody Structure and Sequence Information Garnier-Robson-Osguthorpe NNPREDICT Protein Structural Analysis @BMERC PREDATOR TMAP BCM Search Launcher Protein Motions Database Image Library of Biological Macromolecules @JENA Secondary structure prediction @PBIL

Phylogenetic analysis
Phylogeny : Phylip programs @Pasteur Evolution and Phylogeny Software BIONJ: Puzzle: CMSMBR Molcecular Evolution Introduction to Phylogeny Phylogeny and Evolution Taxonomy and Systematics The Bioinformatics Resource software @Stanford AVAILABLE PHYLOGENY PROGRAMS NJplot Unrooted Phylo_win PHYLIP DARWIN Molphy PUZZLE Phylogenetic Tree prediction PAML TreeGen	TreeView RAPDistance MacClade COMPARE 2.0 CAIC Evolutionary Comparisons using Dst Phylogeny and Reconstructing Phylogenetic Trees RDP TreeBase Phylogenetics Software Resources Treetool TREEALIGN MARKOV fastDNAml MOLPHY PARBOOT DISTREE NJPLOT PHYLO_WIN

Protein Interactions
BRITE DOE-MBI Protein Interaction laboratory	DIP Protein-Protein Interactions PSORT Protein-Protein Interaction Server

Gene
GeneMark @EBI GeneMark ORNL Grail Form GENSCAN	PROCRUSTES Exon, Intron, and Gene Model Prediction @BCM BCM Gene Finder

DNA - RNA
LFasta @PBIL Nucleic Acid Sequence Searches @BCM Sequence Utilities @BCM DNA sequence translation ORNL BLITZ Search Form NuclPepSearch PROSITE full text search: DNA Large Dot Plots Correspondence Analysis of Codon Usage RepeatMasker PATSCAN bend.it Oligo Calculator Tm Determination	dbEST Pattern search @PBIL Codons Frequencies @PBIL Ribosomal Database Ribosomal Database Project II GenCANS-RDP System The rRNA www server @Belgium LSU-rRNA SSU-rRNA RNAdraw Sources for RNA Folding Software ESSA The RNA world @IMB Jena SStructView: